A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs

Nature Protocols

Volumn 7, Issue 8, 2012, Pages 1551-1568

  Thomas Chollier, Morgane ^a   Darbo, Elodie ^b   Herrmann, Carl ^b   Defrance, Matthieu ^c   Thieffry, Denis ^b,d   Van Helden, Jacques ^b,e  

^a MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^b INSERM   (France)

^c INSTITUTO DE CIENCIAS FÍSICAS   (Mexico)

^d ECOLE NORMALE SUPÉRIEURE   (France)

^e UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

KRUPPEL LIKE FACTOR;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; COMPUTER PREDICTION; CONTROLLED STUDY; DROSOPHILA; GENETIC DATABASE; GENETIC TRANSCRIPTION; GENOMICS; NONHUMAN; ONLINE ANALYSIS; PRIORITY JOURNAL; PROCESS OPTIMIZATION; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN MOTIF; REGULATORY SEQUENCE; WEB BROWSER;

ALGORITHMS; ANIMALS; BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; EMBRYO, NONMAMMALIAN; GENOMICS; KRUPPEL-LIKE TRANSCRIPTION FACTORS; MICE; NUCLEOTIDE MOTIFS; SEQUENCE ANALYSIS, DNA; SOFTWARE; TIME FACTORS; TRANSCRIPTION FACTORS; WORKFLOW;

EID: 84864425198     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2012.088     Document Type: Article

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