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Volumn 111, Issue , 2012, Pages 259-281

Integrative Approaches for Cellular Cryo-electron Tomography: Correlative Imaging and Focused Ion Beam Micromachining

Author keywords

Automated segmentation.; Cellular electron tomography; Correlative microscopy; Cryo FIB; Focused ion beam; Frozen hydrated cells; Structural biology

Indexed keywords


EID: 84864386261     PISSN: 0091679X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-12-416026-2.00014-5     Document Type: Chapter
Times cited : (53)

References (58)
  • 1
    • 15444366581 scopus 로고    scopus 로고
    • Cutting artefacts and cutting process in vitreous sections for cryo-electron microscopy
    • Al-Amoudi A., Studer D., Dubochet J. Cutting artefacts and cutting process in vitreous sections for cryo-electron microscopy. Journal of Structural Biology 2005, 150:109-121.
    • (2005) Journal of Structural Biology , vol.150 , pp. 109-121
    • Al-Amoudi, A.1    Studer, D.2    Dubochet, J.3
  • 2
    • 36849060240 scopus 로고    scopus 로고
    • The molecular architecture of cadherins in native epidermal desmosomes
    • Al-Amoudi A., Diez D.C., Betts M.J., Frangakis A.S. The molecular architecture of cadherins in native epidermal desmosomes. Nature 2007, 450:832-837.
    • (2007) Nature , vol.450 , pp. 832-837
    • Al-Amoudi, A.1    Diez, D.C.2    Betts, M.J.3    Frangakis, A.S.4
  • 3
    • 84862803501 scopus 로고    scopus 로고
    • Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency
    • Bammes B.E., Rochat R.H., Jakana J., Chen D.H., Chiu W. Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency. Journal of Structural Biology 2012, 177:589-601.
    • (2012) Journal of Structural Biology , vol.177 , pp. 589-601
    • Bammes, B.E.1    Rochat, R.H.2    Jakana, J.3    Chen, D.H.4    Chiu, W.5
  • 4
    • 14544297527 scopus 로고    scopus 로고
    • From proteomic inventory to architecture
    • Baumeister W. From proteomic inventory to architecture. FEBS Letters 2005, 579:933-937.
    • (2005) FEBS Letters , vol.579 , pp. 933-937
    • Baumeister, W.1
  • 5
    • 0028659872 scopus 로고
    • Analysis of transient structures by cryomicroscopy combined with rapid mixing of spray droplets
    • Berriman J., Unwin N. Analysis of transient structures by cryomicroscopy combined with rapid mixing of spray droplets. Ultramicroscopy 1994, 56:241-252.
    • (1994) Ultramicroscopy , vol.56 , pp. 241-252
    • Berriman, J.1    Unwin, N.2
  • 7
    • 38349081491 scopus 로고    scopus 로고
    • Single particle analysis based on Zernike phase contrast transmission electron microscopy
    • Danev R., Nagayama K. Single particle analysis based on Zernike phase contrast transmission electron microscopy. Journal of Structural Biology 2008, 161:211-218.
    • (2008) Journal of Structural Biology , vol.161 , pp. 211-218
    • Danev, R.1    Nagayama, K.2
  • 8
    • 14044262855 scopus 로고    scopus 로고
    • Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
    • Denk W., Horstmann H. Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure. Plos Biology 2004, 2:1900-1909.
    • (2004) Plos Biology , vol.2 , pp. 1900-1909
    • Denk, W.1    Horstmann, H.2
  • 11
    • 0035239220 scopus 로고    scopus 로고
    • The cell in absence of aggregation artifacts
    • Dubochet J., Sartori Blanc N. The cell in absence of aggregation artifacts. Micron 2001, 32:91-99.
    • (2001) Micron , vol.32 , pp. 91-99
    • Dubochet, J.1    Sartori Blanc, N.2
  • 12
    • 33847190617 scopus 로고    scopus 로고
    • The physics of rapid cooling and its implications for cryoimmobilization of cells
    • Dubochet J. The physics of rapid cooling and its implications for cryoimmobilization of cells. Methods in Cell Biology 2007, 79:7-21.
    • (2007) Methods in Cell Biology , vol.79 , pp. 7-21
    • Dubochet, J.1
  • 14
    • 27944437387 scopus 로고    scopus 로고
    • Spatial and temporal resolution in cryo-electron microscopy: a scope for nano-chemistry
    • Frederik P.M., Sommerdijk N. Spatial and temporal resolution in cryo-electron microscopy: a scope for nano-chemistry. Current Opinion in Colloid & Interface Science 2005, 10:245-249.
    • (2005) Current Opinion in Colloid & Interface Science , vol.10 , pp. 245-249
    • Frederik, P.M.1    Sommerdijk, N.2
  • 18
    • 29844448078 scopus 로고    scopus 로고
    • Towards high-resolution three-dimensional imaging of native mammalian tissue: electron tomography of frozen-hydrated rat liver sections
    • Hsieh C.E., Leith A., Mannella C.A., Frank J., Marko M. Towards high-resolution three-dimensional imaging of native mammalian tissue: electron tomography of frozen-hydrated rat liver sections. Journal of Structural Biology 2006, 153:1-13.
    • (2006) Journal of Structural Biology , vol.153 , pp. 1-13
    • Hsieh, C.E.1    Leith, A.2    Mannella, C.A.3    Frank, J.4    Marko, M.5
  • 19
    • 0000296375 scopus 로고
    • Cross-sectional transmission electron-microscopy of precisely selected regions from semiconductor-devices
    • Kirk E.C.G., Williams D.A., Ahmed H. Cross-sectional transmission electron-microscopy of precisely selected regions from semiconductor-devices. Institute of Physics Conference Series 1989, 100:501-506.
    • (1989) Institute of Physics Conference Series , vol.100 , pp. 501-506
    • Kirk, E.C.G.1    Williams, D.A.2    Ahmed, H.3
  • 20
    • 41149120500 scopus 로고    scopus 로고
    • Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling
    • Knott G., Marchman H., Wall D., Lich B. Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling. Journal of Neuroscience 2008, 28:2959-2964.
    • (2008) Journal of Neuroscience , vol.28 , pp. 2959-2964
    • Knott, G.1    Marchman, H.2    Wall, D.3    Lich, B.4
  • 21
    • 79960898027 scopus 로고    scopus 로고
    • Computer controlled cryo-electron microscopy-TOM(2) a software package for high-throughput applications
    • Korinek A., Beck F., Baumeister W., Nickell S., Plitzko J.M. Computer controlled cryo-electron microscopy-TOM(2) a software package for high-throughput applications. Journal of Structural Biology 2011, 175:394-405.
    • (2011) Journal of Structural Biology , vol.175 , pp. 394-405
    • Korinek, A.1    Beck, F.2    Baumeister, W.3    Nickell, S.4    Plitzko, J.M.5
  • 22
    • 12344274281 scopus 로고    scopus 로고
    • Cryo-electron tomography reveals the cytoskeletal structure of Spiroplasma melliferum
    • Kurner J., Frangakis A.S., Baumeister W. Cryo-electron tomography reveals the cytoskeletal structure of Spiroplasma melliferum. Science 2005, 307:436-438.
    • (2005) Science , vol.307 , pp. 436-438
    • Kurner, J.1    Frangakis, A.S.2    Baumeister, W.3
  • 25
    • 0037418882 scopus 로고    scopus 로고
    • Development and use of fluorescent protein markers in living cells
    • Lippincott-Schwartz J., Patterson G.H. Development and use of fluorescent protein markers in living cells. Science 2003, 300:87-91.
    • (2003) Science , vol.300 , pp. 87-91
    • Lippincott-Schwartz, J.1    Patterson, G.H.2
  • 26
    • 14844330221 scopus 로고    scopus 로고
    • Structural studies by electron tomography: from cells to molecules
    • Lucic V., Forster F., Baumeister W. Structural studies by electron tomography: from cells to molecules. Annual Review of Biochemistry 2005, 74:833-865.
    • (2005) Annual Review of Biochemistry , vol.74 , pp. 833-865
    • Lucic, V.1    Forster, F.2    Baumeister, W.3
  • 27
    • 33744808536 scopus 로고    scopus 로고
    • Focused ion beam milling of vitreous water: prospects for an alternative to cryo-ultramicrotomy of frozen-hydrated biological samples
    • Marko M., Hsieh C., Moberlychan W., Mannella C.A., Frank J. Focused ion beam milling of vitreous water: prospects for an alternative to cryo-ultramicrotomy of frozen-hydrated biological samples. Journal of Microscopy-Oxford 2006, 222:42-47.
    • (2006) Journal of Microscopy-Oxford , vol.222 , pp. 42-47
    • Marko, M.1    Hsieh, C.2    Moberlychan, W.3    Mannella, C.A.4    Frank, J.5
  • 28
    • 33847685630 scopus 로고    scopus 로고
    • Focused-ion-beam thinning of frozen-hydrated biological specimens for cryo-electron microscopy
    • Marko M., Hsieh C., Schalek R., Frank J., Mannella C. Focused-ion-beam thinning of frozen-hydrated biological specimens for cryo-electron microscopy. Nature Methods 2007, 4:215-217.
    • (2007) Nature Methods , vol.4 , pp. 215-217
    • Marko, M.1    Hsieh, C.2    Schalek, R.3    Frank, J.4    Mannella, C.5
  • 30
    • 70349970912 scopus 로고    scopus 로고
    • Enhanced imaging in low dose electron microscopy using electron counting
    • McMullan G., Clark A.T., Turchetta R., Faruqi A.R. Enhanced imaging in low dose electron microscopy using electron counting. Ultramicroscopy 2009, 109:1411-1416.
    • (2009) Ultramicroscopy , vol.109 , pp. 1411-1416
    • McMullan, G.1    Clark, A.T.2    Turchetta, R.3    Faruqi, A.R.4
  • 31
    • 67650538546 scopus 로고    scopus 로고
    • Experimental observation of the improvement in MTF from backthinning a CMOS direct electron detector
    • McMullan G., Faruqi A.R., Henderson R., Guerrini N., Turchetta R., Jacobs A., et al. Experimental observation of the improvement in MTF from backthinning a CMOS direct electron detector. Ultramicroscopy 2009, 109:1144-1147.
    • (2009) Ultramicroscopy , vol.109 , pp. 1144-1147
    • McMullan, G.1    Faruqi, A.R.2    Henderson, R.3    Guerrini, N.4    Turchetta, R.5    Jacobs, A.6
  • 32
    • 0037044862 scopus 로고    scopus 로고
    • Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography
    • Medalia O., Weber I., Frangakis A.S., Nicastro D., Gerisch G., Baumeister W. Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography. Science 2002, 298:1209-1213.
    • (2002) Science , vol.298 , pp. 1209-1213
    • Medalia, O.1    Weber, I.2    Frangakis, A.S.3    Nicastro, D.4    Gerisch, G.5    Baumeister, W.6
  • 33
    • 28844456522 scopus 로고    scopus 로고
    • Gold nanocluster formation using metallothionein: mass spectrometry and electron microscopy
    • Mercogliano C.P., DeRosier D.J. Gold nanocluster formation using metallothionein: mass spectrometry and electron microscopy. Journal of Molecular Biology 2006, 355:211-223.
    • (2006) Journal of Molecular Biology , vol.355 , pp. 211-223
    • Mercogliano, C.P.1    DeRosier, D.J.2
  • 35
    • 0002133971 scopus 로고
    • Theory and practice of high pressure freezing
    • Springer-Verlag, Berlin, R.A. Steinbrecht, K. Zierold (Eds.)
    • Moor H. Theory and practice of high pressure freezing. Cryotechniques in biological electron microscopy 1987, 175-191. Springer-Verlag, Berlin. R.A. Steinbrecht, K. Zierold (Eds.).
    • (1987) Cryotechniques in biological electron microscopy , pp. 175-191
    • Moor, H.1
  • 37
    • 77955481741 scopus 로고    scopus 로고
    • Zernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions
    • Murata K., Liu X.A., Danev R., Jakana J., Schmid M.F., King J., et al. Zernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions. Structure 2010, 18:903-912.
    • (2010) Structure , vol.18 , pp. 903-912
    • Murata, K.1    Liu, X.A.2    Danev, R.3    Jakana, J.4    Schmid, M.F.5    King, J.6
  • 42
    • 65449162388 scopus 로고    scopus 로고
    • Correlative cryo-light microscopy and cryo-electron tomography: from cellular territories to molecular landscapes
    • Plitzko J.M., Rigort A., Leis A. Correlative cryo-light microscopy and cryo-electron tomography: from cellular territories to molecular landscapes. Current Opinion in Biotechnology 2009, 20:83-89.
    • (2009) Current Opinion in Biotechnology , vol.20 , pp. 83-89
    • Plitzko, J.M.1    Rigort, A.2    Leis, A.3
  • 43
    • 0037459075 scopus 로고    scopus 로고
    • Cellular motility driven by assembly and disassembly of actin filaments
    • Pollard T.D., Borisy G.G. Cellular motility driven by assembly and disassembly of actin filaments. Cell 2003, 112:453-465.
    • (2003) Cell , vol.112 , pp. 453-465
    • Pollard, T.D.1    Borisy, G.G.2
  • 44
    • 0027966710 scopus 로고
    • Cutting artifacts on ultrathin cryosections of biological bulk specimens
    • Richter K. Cutting artifacts on ultrathin cryosections of biological bulk specimens. Micron 1994, 25:297-308.
    • (1994) Micron , vol.25 , pp. 297-308
    • Richter, K.1
  • 47
    • 84855838451 scopus 로고    scopus 로고
    • Automated segmentation of electron tomograms for a quantitative description of actin filament networks
    • Rigort A., Gunther D., Hegerl R., Baum D., Weber B., Prohaska S., et al. Automated segmentation of electron tomograms for a quantitative description of actin filament networks. Journal of Structural Biology 2012, 177:135-144.
    • (2012) Journal of Structural Biology , vol.177 , pp. 135-144
    • Rigort, A.1    Gunther, D.2    Hegerl, R.3    Baum, D.4    Weber, B.5    Prohaska, S.6
  • 49
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • Rust M.J., Bates M., Zhuang X. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nature Methods 2006, 3:793-795.
    • (2006) Nature Methods , vol.3 , pp. 793-795
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 50
    • 35148839574 scopus 로고    scopus 로고
    • Correlative microscopy: bridging the gap between fluorescence light microscopy and cryo-electron tomography
    • Sartori A., Gatz R., Beck F., Rigort A., Baumeister W., Plitzko J.M. Correlative microscopy: bridging the gap between fluorescence light microscopy and cryo-electron tomography. Journal of Structural Biology 2007, 160:135-145.
    • (2007) Journal of Structural Biology , vol.160 , pp. 135-145
    • Sartori, A.1    Gatz, R.2    Beck, F.3    Rigort, A.4    Baumeister, W.5    Plitzko, J.M.6
  • 51
    • 34548472879 scopus 로고    scopus 로고
    • Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching
    • Schwartz C.L., Sarbash V.I., Ataullakhanov F.I., McIntosh J.R., Nicastro D. Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching. Journal of Microscopy 2007, 227:98-109.
    • (2007) Journal of Microscopy , vol.227 , pp. 98-109
    • Schwartz, C.L.1    Sarbash, V.I.2    Ataullakhanov, F.I.3    McIntosh, J.R.4    Nicastro, D.5
  • 55
    • 69949083343 scopus 로고    scopus 로고
    • Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells
    • van Driel L.F., Valentijn J.A., Valentijn K.M., Koning R.I., Koster A.J. Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells. European Journal of Cell Biology 2009, 88:669-684.
    • (2009) European Journal of Cell Biology , vol.88 , pp. 669-684
    • van Driel, L.F.1    Valentijn, J.A.2    Valentijn, K.M.3    Koning, R.I.4    Koster, A.J.5
  • 56
    • 34249811780 scopus 로고    scopus 로고
    • Focused ion beam microscopy and micromachining
    • Volkert C.A., Minor A.M. Focused ion beam microscopy and micromachining. MRS Bulletin 2007, 32:389-395.
    • (2007) MRS Bulletin , vol.32 , pp. 389-395
    • Volkert, C.A.1    Minor, A.M.2
  • 57
    • 84860546928 scopus 로고    scopus 로고
    • Automated tracing of microtubules in electron tomograms of plastic embedded samples of Caenorhabditis elegans embryos
    • Weber B., Greenan G., Prohaska S., Baum D., Hege H.C., Muller-Reichert T., et al. Automated tracing of microtubules in electron tomograms of plastic embedded samples of Caenorhabditis elegans embryos. Journal of Structural Biology 2012, 178:129-138.
    • (2012) Journal of Structural Biology , vol.178 , pp. 129-138
    • Weber, B.1    Greenan, G.2    Prohaska, S.3    Baum, D.4    Hege, H.C.5    Muller-Reichert, T.6


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