The promoter region of the Zinnia elegans basic peroxidase isoenzyme gene contains cis-elements responsive to nitric oxide and hydrogen peroxide

Planta

Volumn 236, Issue 2, 2012, Pages 327-342

  Gómez Ros, Laura V ^a   Gabaldón, Carlos ^a   López Núñez Flores, María José ^a   Gutiérrez, Jorge ^c   Herrero, Joaquín ^b   Zapata, José Miguel ^b   Sottomayor, Mariana ^d   Cuello, Juan ^a   Ros Barceló, Alfonso ^a  

^a UNIVERSITY OF MURCIA   (Spain)

^b UNIVERSITY OF ALCALÁ   (Spain)

^c UNIVERSITY OF A CORUÑA   (Spain)

^d UNIVERSITY OF PORTO   (Portugal)

Author keywords

Hydrogen peroxide; Nitric oxide; OCS element; Octopine synthase box; Peroxidase; Promoter; Zinnia

Indexed keywords

COMPLEMENTARY DNA; HYDROGEN PEROXIDE; ISOENZYME; LIGNIN; NITRIC OXIDE; PEROXIDASE; PLANT DNA; PLANT RNA;

5' UNTRANSLATED REGION; ARTICLE; ASTERACEAE; DNA RESPONSIVE ELEMENT; DRUG EFFECT; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE MOTIF; NUCLEOTIDE SEQUENCE; PROMOTER REGION; SEEDLING; SEQUENCE ALIGNMENT; UPREGULATION;

5' UNTRANSLATED REGIONS; ASTERACEAE; BASE SEQUENCE; DNA, COMPLEMENTARY; DNA, PLANT; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; HYDROGEN PEROXIDE; ISOENZYMES; LIGNIN; MOLECULAR SEQUENCE DATA; NITRIC OXIDE; NUCLEOTIDE MOTIFS; PEROXIDASE; PROMOTER REGIONS, GENETIC; RESPONSE ELEMENTS; RNA, PLANT; SEEDLING; SEQUENCE ALIGNMENT; UP-REGULATION;

ZINNIA; ZINNIA ELEGANS;

EID: 84864364282     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-012-1604-3     Document Type: Article

References (68)

1. Abe H, Yamaguchi Shinozaki K, Urao T, Iwasaki T, Hosokawa D, Shinozaki K (1997) Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Plant Cell 9: 1859-1868.
2. Abe M, Takahashi T, Komeda Y (2001) Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein. Plant J 26: 487-494.
3. Alston TA, Porter DJT, Bright HJ (1985) Generation of nitric oxide by enzymatic oxidation of N-hydroxy-N-nitrosamines. J Biol Chem 260: 4069-4074.
4. Besson-Bard A, Pugin A, Wendehenne D (2008) New insights into nitric oxide signaling in plants. Annu Rev Plant Biol 59: 21-39.
5. Capone R, Tiwari BS, Levine A (2004) Rapid transmission of oxidative and nitrosative stress signals from roots to shoots in Arabidopsis. Plant Physiol Biochem 42: 425-428.
6. Cercos M, Gómez-Cadenas A, Ho THD (1999) Hormonal regulation of a cysteine proteinase gene, EPB-1, in barley aleurone layers: cis- and trans-acting elements involved in the co-ordinated gene expression regulated by gibberellins and abscisic acid. Plant J 19: 107-118.
7. Clark D, Durner J, Navarre DA, Klessig DF (2000) Nitric oxide inhibition of tobacco catalase and ascorbate peroxidase. Mol Plant Microbe Interact 13: 1380-1384.
8. Corpas FJ, Barroso JB, Carreras A, Valderrama R, Palma JM, Leon AM, Sandalio LM, del Río LA (2006) Constitutive arginine-dependent nitric oxide synthase activity in different organs of pea seedlings during plant development. Planta 224: 246-254.
9. 2-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding sites. Plant J 10: 955-966.
10. Chen WQ, Singh KB (1999) The auxin, hydrogen peroxide and salicylic acid induced expression of the Arabidopsis GST6 promoter is mediated in part by an ocs element. Plant J 19: 667-677.
11. de Pinto MC, Paradiso A, Leonetti P, De Gara L (2006) Hydrogen peroxide, nitric oxide and cytosolic ascorbate peroxidase at the crossroad between defence and cell death. Plant J 48: 784-795.
12. Delledonne M (2005) NO news is good news for plants. Curr Opin Plant Biol 8: 390-396.
13. Demura T, Fukuda H (2007) Transcriptional regulation in wood formation. Trends Plant Sci 12: 64-70.
14. Demura T, Tashiro G, Horiguchi G, Kishimoto N, Kubo M, Matsuoka N, Minami A, Nagata-Hiwatashi M, Nakamura K, Okamura Y, Sassa N, Suzuki S, Yazaki J, Kikuchi S, Fukuda H (2002) Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells. Proc Natl Acad Sci USA 99: 15794-15799.
15. Drochioiu G (2002) Fast and highly selective determination of cyanide with 2, 2-dihydroxy-1, 3-indanedione. Talanta 56: 1163-1165.
16. Edwards D, Murray JAH, Smith AG (1998) Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis. Plant Physiol 117: 1015-1022.
17. Ellis JG, Tokuhisa JG, Llewellyn DJ, Bouchez D, Singh K, Dennis ES, Peacock WJ (1993) Does the ocs-element occur as a functional component of the promoters of plant genes. Plant J 4: 433-443.
18. Escamilla-Trevino LL, Shen H, Uppalapati SR, Ray T, Tang Y, Hernandez T, Yin Y, Xu Y, Dixon RA (2010) Switchgrass (Panicum virgatum) possesses a divergent family of cinnamoyl CoA reductases with distinct biochemical properties. New Phytol 185: 143-155.
19. Floryszak-Wieczorek J, Milczarek G, Arasimowicz M, Ciszewski A (2006) Do nitric oxide donors mimic endogenous NO-related response in plants? Planta 224: 1363-1372.
20. Gabaldón C, Gómez Ros LV, López Núñez-Flores MJ, Esteban Carrasco A, Ros Barceló A (2007) Post-translational modifications of the basic peroxidase isoenzyme from Zinnia elegans. Plant Mol Biol 65: 43-61.
21. Gabaldón C, Gómez Ros LV, Pedreño MA, Ros Barceló A (2005a) Nitric oxide production by the differentiating xylem of Zinnia elegans. New Phytol 165: 121-130.
22. Gabaldón C, López-Serrano M, Pedreño MA, Ros Barceló A (2005b) Cloning and molecular characterization of the basic peroxidase isoenzyme from Zinnia elegans, an enzyme involved in lignin biosynthesis. Plant Physiol 139: 1138-1154.
23. ·-. J Biol Chem 278: 50949-50955.
24. 2 in the lignifying Zinnia elegans cell culture system. Protoplasma 227: 175-183.
25. Gutiérrez J, López Núñez-Flores MJ, Gómez Ros LV, Uzal EN, Esteban Carrasco A, Díaz J, Sottomayor M, Cuello J, Ros Barceló A (2009) Hormonal regulation of the basic peroxidase isoenzyme from Zinnia elegans. Planta 230: 767-778.
26. Higo K, Ugawa Y, Iwamoto M, Korenaga T (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res 27: 297-300.
27. Hu RB, Fan CM, Li HY, Zhang QZ, Fu YF (2009) Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR. BMC Mol Biol 10: 93.
28. Kawaoka A, Kaothien P, Yoshida K, Endo S, Yamada K, Ebinuma H (2000) Functional analysis of tobacco LIM protein Ntlim1 involved in lignin biosynthesis. Plant J 22: 289-301.
29. Kim HS, Yu Y, Snesrud EC, Moy LP, Linford LD, Haas BJ, Nierman WC, Quackenbush J (2005) Transcriptional divergence of the duplicated oxidative stress-responsive genes in the Arabidopsis genome. Plant J 41: 212-220.
30. Kim SY, Chung HJ, Thomas TL (1997) Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system. Plant J 11: 1237-1251.
31. Ko JH, Han KH (2004) Arabidopsis whole-transcriptome profiling defines the features of coordinated regulations that occur during secondary growth. Plant Mol Biol 55: 433-453.
32. Kubo M, Udagawa M, Nishikubo N, Horiguchi G, Yamaguchi M, Ito J, Mimura T, Fukuda H, Demura T (2005) Transcription switches for protoxylem and metaxylem vessel formation. Gene Dev 19: 1855-1860.
33. Lebel E, Heifetz P, Thorne L, Uknes S, Ryals J, Ward E (1998) Functional analysis of regulatory sequences controlling PR-1 gene expression in Arabidopsis. Plant J 16: 223-233.
34. López Núñez-Flores MJ, Gutiérrez J, Gómez Ros LV, Uzal EN, Sottomayor M, Ros Barceló A (2010) Downregulation of the basic peroxidase isoenzyme from Zinnia elegans by gibberellic acid. J Integr Plant Biol 52: 244-251.
35. McClure BA, Hagen G, Brown CS, Gee MA, Guilfoyle TJ (1989) Transcription, organization, and sequence of an auxin-regulated gene-cluster in soybean. Plant Cell 1: 229-239.
36. Meng Z, King PH, Nabors LB, Jackson NL, Chen CY, Emanuel PD, Blume SW (2005) The ELAV RNA-stability factor HuR binds the 5′-untranslated region of the human IGF-IR transcript and differentially represses cap-dependent and IRES-mediated translation. Nucleic Acids Res 33: 2962-2979.
37. Nakanomyo I, Kost B, Chua NH, Fukuda H (2002) Preferential and asymmetrical accumulation of a Rac small GTPase mRNA in differentiating xylem cells of Zinnia elegans. Plant Cell Physiol 43: 1484-1492.
38. Narsai R, Howell KA, Millar AH, O′Toole N, Small I, Whelan J (2007) Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana. Plant Cell 19: 3418-3436.
39. Navarre DA, Wendehenne D, Durner J, Noad R, Klessig DF (2000) Nitric oxide modulates the activity of tobacco aconitase. Plant Physiol 122: 573-582.
40. Neill SJ, Desikan R, Clarke A, Hurst RD, Hancock JT (2002) Hydrogen peroxide and nitric oxide as signalling molecules in plants. J Exp Bot 53: 1237-1247.
41. Newman TC, Ohmetakagi M, Taylor CB, Green PJ (1993) DST sequences, highly conserved among plant SAUR genes, target reporter transcripts for rapid decay in tobacco. Plant Cell 5: 701-714.
42. Noriega GO, Yannarelli GG, Balestrasse KB, Batlle A, Tomaro ML (2007) The effect of nitric oxide on heme oxygenase gene expression in soybean leaves. Planta 226: 1155-1163.
43. Østergaard L, Pedersen AG, Jespersen HM, Brunak S, Welinder KG (1998) Computational analyses and annotations of the Arabidopsis peroxidase gene family. FEBS Lett 433: 98-102.
44. Palmieri MC, Sell S, Huang X, Scherf M, Werner T, Durner J, Lindermayr C (2008) Nitric oxide-responsive genes and promoters in Arabidopsis thaliana: a bioinformatics approach. J Exp Bot 59: 177-186.
45. Parani M, Rudrabhatla S, Myers R, Weirich H, Smith B, Leaman DW, Goldman SL (2004) Microarray analysis of nitric oxide responsive transcripts in Arabidopsis. Plant Biotech J 2: 359-366.
46. Passardi F, Penel C, Dunand C (2004) Performing the paradoxical: how plant peroxidases modify the cell wall. Trends Plant Sci 9: 534-540.
47. Patzlaff A, McInnis S, Courtenay A, Surman C, Newman LJ, Smith C, Bevan MW, Mansfield S, Whetten RW, Sederoff RR, Campbell MM (2003) Characterisation of a pine MYB that regulates lignification. Plant J 36: 743-754.
48. Pesquet E, Ranocha P, Legay S, Digonnet C, Barbier O, Pichon M, Goffner D (2005) Novel markers of xylogenesis in Zinnia are differentially regulated by auxin and cytokinin. Plant Physiol 139: 1821-1839.
49. Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
50. Raes J, Rohde A, Christensen JH, van de Peer Y, Boerjan W (2003) Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol 133: 1051-1071.
51. Rodríguez-Serrano M, Romero-Puertas MC, Pazmino DM, Testillano PS, Risueno MC, del Río LA, Sandalio LM (2009) Cellular response of pea plants to cadmium toxicity: cross talk between reactive oxygen species, nitric oxide, and calcium. Plant Physiol 150: 229-243.
52. 2 in the xylem of Zinnia elegans is mediated by an NADPH-oxidase-like enzyme. Planta 207: 207-216.
53. 2 necessary for lignification in differentiating xylem vessels. Planta 220: 747-756.
54. Ros Barceló A, Pomar F, Ferrer MA, Martínez P, Ballesta MC, Pedreño MA (2002a) In situ characterization of a NO-sensitive peroxidase in the lignifying xylem of Zinnia elegans. Physiol Plant 114: 33-40.
55. 2-producing system and of a basic peroxidase isoenzyme in the Zinnia elegans lignifying xylem. Plant Physiol Biochem 40: 325-332.
56. Rushton PJ, Somssich IE, Ringler P, Shen QXJ (2010) WRKY transcription factors. Trends Plant Sci 15: 247-258.
57. Shishido SM, de Oliveira MG (2001) Photosensitivity of aqueous sodium nitroprusside solutions: nitric oxide release versus cyanide toxicity. Prog React Kinet Mech 26: 239-261.
58. Srivastava V, Schinkel H, Witzell J, Hertzberg M, Torp M, Srivastava MK, Karpinska B, Melzer M, Wingsle G (2007) Downregulation of high-isoelectric-point extracellular superoxide dismutase mediates alterations in the metabolism of reactive oxygen species and developmental disturbances in hybrid aspen. Plant J 49: 135-148.
59. Sullivan ML, Green PJ (1996) Mutational analysis of the DST element in tobacco cells and transgenic plants: identification of residues critical for mRNA instability. RNA 2: 308-315.
60. Ulmasov T, Hagen G, Guilfoyle TJ (1997) ARF1, a transcription factor that binds to auxin response elements. Science 276: 1865-1868.
61. Vranova E, Inze D, van Breusegem F (2002) Signal transduction during oxidative stress. J Exp Bot 53: 1227-1236.
62. Welinder KG, Justesen AF, Kjaersgard IVH, Jensen RB, Rasmussen SK, Jespersen HM, Duroux L (2002) Structural diversity and transcription of class III peroxidases from Arabidopsis thaliana. Eur J Biochem 269: 6063-6081.
63. Weng JK, Akiyama T, Bonawitz ND, Li X, Ralph J, Chapple C (2010) Convergent evolution of syringyl lignin biosynthesis via distinct pathways in the lycophyte Selaginella and flowering plants. Plant Cell 22: 1033-1045.
64. Xu NF, Hagen G, Guilfoyle T (1997) Multiple auxin response modules in the soybean SAUR 15A promoter. Plant Sci 126: 193-201.
65. Yanagisawa S (2004) Dof domain proteins: plant-specific transcription factors associated with diverse phenomena unique to plants. Plant Cell Physiol 45: 386-391.
66. Yonetani T, Yamamoto H, Erman JE, Leigh JS, Reed GH (1972) Electromagnetic properties of hemoproteins. J Biol Chem 247: 2447-2455.
67. Yoshida S, Iwamoto K, Demura T, Fukuda H (2009) Comprehensive analysis of the regulatory roles of auxin in early transdifferentiation into xylem cells. Plant Mol Biol 70: 457-469.
68. Zhong R, Lee C, Ye Z-H (2010) Evolutionary conservation of the transcriptional network regulating secondary cell wall biosynthesis. Trends Plant Sci 15: 625-632.