-
1
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen ZT, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer MLI, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu PG, Begley RF, Rothberg JM (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.T.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Irzyk, G.P.19
Jando, S.C.20
Alenquer, M.L.I.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
Lohman, K.L.31
Lu, H.32
Makhijani, V.B.33
McDade, K.E.34
McKenna, M.P.35
Myers, E.W.36
Nickerson, E.37
Nobile, J.R.38
Plant, R.39
Puc, B.P.40
Ronan, M.T.41
Roth, G.T.42
Sarkis, G.J.43
Simons, J.F.44
Simpson, J.W.45
Srinivasan, M.46
Tartaro, K.R.47
Tomasz, A.48
Vogt, K.A.49
Volkmer, G.A.50
Wang, S.H.51
Wang, Y.52
Weiner, M.P.53
Yu, P.G.54
Begley, R.F.55
Rothberg, J.M.56
more..
-
2
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored rare biosphere
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, Arrieta JM, Herndl GJ (2006) Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci USA 103: 12115-12120.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
3
-
-
73349110099
-
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
-
Kunin V, Engelbrektson A, Ochman H, Hugenholtz P (2010) Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 12: 118-123.
-
(2010)
Environ Microbiol
, vol.12
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
4
-
-
69549112742
-
Accurate determination of microbial diversity from 454 pyrosequencing data
-
Quince C, Lanzén A, Curtis TP, Davenport RJ, Hall N, Head IM, Read LF, Sloan WT (2009) Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods 6: 639-641.
-
(2009)
Nat Methods
, vol.6
, pp. 639-641
-
-
Quince, C.1
Lanzén, A.2
Curtis, T.P.3
Davenport, R.J.4
Hall, N.5
Head, I.M.6
Read, L.F.7
Sloan, W.T.8
-
5
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse SM, Welch DM, Morrison HG, Sogin ML (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12: 1889-1898.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
6
-
-
77955094123
-
PyroTagger: a fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data
-
Kunin V, Hugenholtz P (2010) PyroTagger: a fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data. Open J.
-
(2010)
Open J.
-
-
Kunin, V.1
Hugenholtz, P.2
-
8
-
-
58049123401
-
Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths
-
Hwang C, Wu W, Gentry TJ, Carley J, Corbin GA, Carroll SL, Watson DB, Jardine PM, Zhou J, Criddle CS, Fields MW (2009) Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths. ISME J 3: 47-64.
-
(2009)
ISME J
, vol.3
, pp. 47-64
-
-
Hwang, C.1
Wu, W.2
Gentry, T.J.3
Carley, J.4
Corbin, G.A.5
Carroll, S.L.6
Watson, D.B.7
Jardine, P.M.8
Zhou, J.9
Criddle, C.S.10
Fields, M.W.11
-
9
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas BJ, Gevers D, Earl A, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergen E, Methe B, DeSantis TZ, Petrosino JF, Knight R, Birren BW (2011) Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21: 494-504.
-
(2011)
Genome Res
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
Ciulla, D.7
Tabbaa, D.8
Highlander, S.K.9
Sodergen, E.10
Methe, B.11
Desantis, T.Z.12
Petrosino, J.F.13
Knight, R.14
Birren, B.W.15
-
10
-
-
78149365938
-
Insidious effects of sequencing errors on perceived diversity in molecular surveys
-
Dickie IA (2010) Insidious effects of sequencing errors on perceived diversity in molecular surveys. New Phytol 188: 916-918.
-
(2010)
New Phytol
, vol.188
, pp. 916-918
-
-
Dickie, I.A.1
-
11
-
-
84856563821
-
Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
-
doi: 10. 1111/j. 1462-2920. 2011. 02550. x
-
Gihring TM, Green SJ, Schadt CW (2011) Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environ Microbiol. doi: 10. 1111/j. 1462-2920. 2011. 02550. x.
-
(2011)
Environ Microbiol.
-
-
Gihring, T.M.1
Green, S.J.2
Schadt, C.W.3
-
12
-
-
48749117454
-
Species richness in soil bacterial communities: a proposed approach to overcome sample size bias
-
Youssef NH, Elshahed MS (2008) Species richness in soil bacterial communities: a proposed approach to overcome sample size bias. J Microbiol Methods 75: 86-91.
-
(2008)
J Microbiol Methods
, vol.75
, pp. 86-91
-
-
Youssef, N.H.1
Elshahed, M.S.2
-
13
-
-
54549106898
-
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
-
Liu Z, DeSantis TZ, Andersen GL, Knight R (2008) Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res 36: e120.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Liu, Z.1
Desantis, T.Z.2
Andersen, G.L.3
Knight, R.4
-
14
-
-
35549007148
-
Short pyrosequencing reads suffice for accurate microbial community analysis
-
Liu Z, Lozupone C, Hamady M, Bushman FD, Knight R (2007) Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res 35: e120.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Liu, Z.1
Lozupone, C.2
Hamady, M.3
Bushman, F.D.4
Knight, R.5
-
15
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM (2007) Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol 8: R143.
-
(2007)
Genome Biol
, vol.8
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Welch, D.M.5
-
16
-
-
33750688196
-
454 sequencing put to the test using the complex genome of barley
-
Wicker T, Schlagenhauf E, Graner A, Close TJ, Keller B, Stein N (2006) 454 sequencing put to the test using the complex genome of barley. BMC Genomics 7: 275.
-
(2006)
BMC Genomics
, vol.7
, pp. 275
-
-
Wicker, T.1
Schlagenhauf, E.2
Graner, A.3
Close, T.J.4
Keller, B.5
Stein, N.6
-
17
-
-
0025906879
-
Compilation of small ribosomal subunit RNA sequences
-
Neefs J-M, de Peer YV, De Rijk P, Goris A, De Wachter R (1991) Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res 19: 1987-2015.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 1987-2015
-
-
Neefs, J.-M.1
de Peer, Y.V.2
de Rijk, P.3
Goris, A.4
de Wachter, R.5
-
18
-
-
33644951885
-
Confidence intervals of similarity values determined for cloned SSU rRNA genes from environmental samples
-
Fields MW, Schryver JC, Brandt CC, Yan T, Zhou JZ, Palumbo AV (2006) Confidence intervals of similarity values determined for cloned SSU rRNA genes from environmental samples. J Microbiol Methods 65: 144-152.
-
(2006)
J Microbiol Methods
, vol.65
, pp. 144-152
-
-
Fields, M.W.1
Schryver, J.C.2
Brandt, C.C.3
Yan, T.4
Zhou, J.Z.5
Palumbo, A.V.6
|