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Volumn 64, Issue 2, 2012, Pages 499-508

Quality-Score Refinement of SSU rRNA Gene Pyrosequencing Differs Across Gene Region for Environmental Samples

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84864350928     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-012-0043-9     Document Type: Article
Times cited : (18)

References (18)
  • 3
    • 73349110099 scopus 로고    scopus 로고
    • Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
    • Kunin V, Engelbrektson A, Ochman H, Hugenholtz P (2010) Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 12: 118-123.
    • (2010) Environ Microbiol , vol.12 , pp. 118-123
    • Kunin, V.1    Engelbrektson, A.2    Ochman, H.3    Hugenholtz, P.4
  • 5
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse SM, Welch DM, Morrison HG, Sogin ML (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12: 1889-1898.
    • (2010) Environ Microbiol , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 6
    • 77955094123 scopus 로고    scopus 로고
    • PyroTagger: a fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data
    • Kunin V, Hugenholtz P (2010) PyroTagger: a fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data. Open J.
    • (2010) Open J.
    • Kunin, V.1    Hugenholtz, P.2
  • 10
    • 78149365938 scopus 로고    scopus 로고
    • Insidious effects of sequencing errors on perceived diversity in molecular surveys
    • Dickie IA (2010) Insidious effects of sequencing errors on perceived diversity in molecular surveys. New Phytol 188: 916-918.
    • (2010) New Phytol , vol.188 , pp. 916-918
    • Dickie, I.A.1
  • 11
    • 84856563821 scopus 로고    scopus 로고
    • Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
    • doi: 10. 1111/j. 1462-2920. 2011. 02550. x
    • Gihring TM, Green SJ, Schadt CW (2011) Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environ Microbiol. doi: 10. 1111/j. 1462-2920. 2011. 02550. x.
    • (2011) Environ Microbiol.
    • Gihring, T.M.1    Green, S.J.2    Schadt, C.W.3
  • 12
    • 48749117454 scopus 로고    scopus 로고
    • Species richness in soil bacterial communities: a proposed approach to overcome sample size bias
    • Youssef NH, Elshahed MS (2008) Species richness in soil bacterial communities: a proposed approach to overcome sample size bias. J Microbiol Methods 75: 86-91.
    • (2008) J Microbiol Methods , vol.75 , pp. 86-91
    • Youssef, N.H.1    Elshahed, M.S.2
  • 13
    • 54549106898 scopus 로고    scopus 로고
    • Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
    • Liu Z, DeSantis TZ, Andersen GL, Knight R (2008) Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res 36: e120.
    • (2008) Nucleic Acids Res , vol.36
    • Liu, Z.1    Desantis, T.Z.2    Andersen, G.L.3    Knight, R.4
  • 18
    • 33644951885 scopus 로고    scopus 로고
    • Confidence intervals of similarity values determined for cloned SSU rRNA genes from environmental samples
    • Fields MW, Schryver JC, Brandt CC, Yan T, Zhou JZ, Palumbo AV (2006) Confidence intervals of similarity values determined for cloned SSU rRNA genes from environmental samples. J Microbiol Methods 65: 144-152.
    • (2006) J Microbiol Methods , vol.65 , pp. 144-152
    • Fields, M.W.1    Schryver, J.C.2    Brandt, C.C.3    Yan, T.4    Zhou, J.Z.5    Palumbo, A.V.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.