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Volumn 39, Issue 7, 2012, Pages 7513-7523

Characterization of transcriptional activation and inserted-into-gene preference of various transposable elements in the Brassica species

Author keywords

Brassica species; Genes disrupted by insertion of TE; Transposable element (TE) for transposition; Transposon activation

Indexed keywords

COMPLEMENTARY DNA;

EID: 84864289220     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-012-1585-0     Document Type: Article
Times cited : (3)

References (50)
  • 1
    • 77950473787 scopus 로고    scopus 로고
    • Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements
    • Ast G, Levy A, Schwartz S (2010) Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements. Nucleic Acids Res 38(5):1515-1530
    • (2010) Nucleic Acids Res , vol.38 , Issue.5 , pp. 1515-1530
    • Ast, G.1    Levy, A.2    Schwartz, S.3
  • 2
    • 67349144654 scopus 로고    scopus 로고
    • Identification of expressed transposable element insertions in the sequenced genome of drosophila melanogaster
    • Deloger M, Cavalli FM, Lerat E, Biemont C, Sagot MF, Vieira C (2009) Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster. Gene 439(1-2):55-62
    • (2009) Gene , vol.439 , Issue.1-2 , pp. 55-62
    • Deloger, M.1    Cavalli, F.M.2    Lerat, E.3    Biemont, C.4    Sagot, M.F.5    Vieira, C.6
  • 5
    • 77958149797 scopus 로고    scopus 로고
    • Trascriptional activity of transposable elements in maize
    • Vicient CM (2010) Trascriptional activity of transposable elements in maize. BMC Genomics 11:1471-2164
    • (2010) BMC Genomics , vol.11 , pp. 1471-2164
    • Vicient, C.M.1
  • 6
    • 77649305693 scopus 로고    scopus 로고
    • The transposon impala is activated by low temperatures: Use of a controlled transposition system to identify genes critical for viability of aspergillus fu-migatus
    • Carr PD, Tuckwell D, Hey PM, Simon L, d'Enfert C, Birch M, Oliver JD, Bromley MJ (2010) The transposon impala is activated by low temperatures: use of a controlled transposition system to identify genes critical for viability of aspergillus fu-migatus. Eukaryot Cell 9(3):438-448
    • (2010) Eukaryot Cell , vol.9 , Issue.3 , pp. 438-448
    • Carr, P.D.1    Tuckwell, D.2    Hey, P.M.3    Simon, L.4    D'Enfert, C.5    Birch, M.6    Oliver, J.D.7    Bromley, M.J.8
  • 7
    • 0028697478 scopus 로고
    • Transposable elements and adaptation of host bacteria
    • Blot M (1994) Transposable elements and adaptation of host bacteria. Genetica 93(1-3):5-12
    • (1994) Genetica , vol.93 , Issue.1-3 , pp. 5-12
    • Blot, M.1
  • 9
    • 0035105221 scopus 로고    scopus 로고
    • Perspective: Transposable elements, parasitic DNA, and genome evolution
    • Kidwell MG, Lisch DR (2001) Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution 55(1): 1-24 (Pubitemid 32175281)
    • (2001) Evolution , vol.55 , Issue.1 , pp. 1-24
    • Kidwell, M.G.1    Lisch, D.R.2
  • 10
    • 0018894384 scopus 로고
    • Selfish genes, the phenotype paradigm and genome evolution
    • Doolittle WF, Sapienza C (1980) Selfish genes, the pheno-type paradigm and genome evolution. Nature 284(5757): 601-603 (Pubitemid 10070865)
    • (1980) Nature , vol.284 , Issue.5757 , pp. 601-603
    • Doolittle, W.F.1    Sapienza, C.2
  • 11
    • 0034160156 scopus 로고    scopus 로고
    • Transposable elements and host genome evolution
    • DOI 10.1016/S0169-5347(99)01817-0
    • Kidwell MG, Lisch DR (2000) Transposable elements and host genome evolution. Trends Ecol Evol 15(3):95-99 (Pubitemid 30099988)
    • (2000) Trends in Ecology and Evolution , vol.15 , Issue.3 , pp. 95-99
    • Kidwell, M.G.1    Lisch, D.R.2
  • 12
    • 62349089758 scopus 로고    scopus 로고
    • Molecular domestication of transposable elements: From detrimental parasites to useful host genes
    • Sinzelle L, Izsvak Z, Ivics Z (2009) Molecular domestication of transposable elements: from detrimental parasites to useful host genes. Cell Mol Life Sci 66(6):1073-1093
    • (2009) Cell Mol Life Sci , vol.66 , Issue.6 , pp. 1073-1093
    • Sinzelle, L.1    Izsvak, Z.2    Ivics, Z.3
  • 14
    • 42449099982 scopus 로고    scopus 로고
    • Dual coding of siRNAs and miRNAs by plant transposable elements
    • DOI 10.1261/rna.916708
    • Piriyapongsa J, Jordan IK (2008) Dual coding of siRNAs and miRNAs by plant transposable elements. RNA 5:814-821 (Pubitemid 351574902)
    • (2008) RNA , vol.14 , Issue.5 , pp. 814-821
    • Piriyapongsa, J.1    Jordan, I.K.2
  • 15
    • 0033976643 scopus 로고    scopus 로고
    • Transposable element contributions to plant gene and genome evolution
    • DOI 10.1023/A:1006344508454
    • Bennetzen JL (2000) Transposable element contributions to plant gene and genome evolution. Plant Mol Biol 42(1):251-269 (Pubitemid 30096120)
    • (2000) Plant Molecular Biology , vol.42 , Issue.1 , pp. 251-269
    • Bennetzen, J.L.1
  • 16
    • 77956811011 scopus 로고    scopus 로고
    • Recent insights into mechanisms of genome size change in plants
    • Grover CE, Wendel JE (2010) Recent insights into mechanisms of genome size change in plants. J Bot
    • J Bot , vol.2010
    • Grover, C.E.1    Wendel, J.E.2
  • 18
    • 71749094924 scopus 로고    scopus 로고
    • Transposable elements in gene regulation and in the evolution of vertebrate genomes
    • Bourque G (2009) Transposable elements in gene regulation and in the evolution of vertebrate genomes. Curr Opin Genet Dev 19(6):607-612
    • (2009) Curr Opin Genet Dev , vol.19 , Issue.6 , pp. 607-612
    • Bourque, G.1
  • 19
    • 0035065510 scopus 로고    scopus 로고
    • Retrotransposons as epigenetic mediators of phenotypic variation in mammals
    • DOI 10.1038/86850
    • Whitelaw E, Martin DIK (2001) Retrotransposons as epigenetic mediators of phenotypic variation in mammals. Nat Genet 27:361-365 (Pubitemid 32268412)
    • (2001) Nature Genetics , vol.27 , Issue.4 , pp. 361-365
    • Whitelaw, E.1    Martin, D.I.K.2
  • 20
    • 77953234794 scopus 로고    scopus 로고
    • LINE dancing in the human genome: Transposable elements and disease
    • Belancio VP, Deininger PL, Roy-Engel AM (2009) LINE dancing in the human genome: transposable elements and disease. Genome Med 1(10):97
    • (2009) Genome Med , vol.1 , Issue.10 , pp. 97
    • Belancio, V.P.1    Deininger, P.L.2    Roy-Engel, A.M.3
  • 23
    • 76549117971 scopus 로고    scopus 로고
    • Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine
    • Fernandez L, Torregrosa L, Segura V, Bouquet A, Martinez-Zapater JM (2010) Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine. Plant J 61(4):545-557
    • (2010) Plant J , vol.61 , Issue.4 , pp. 545-557
    • Fernandez, L.1    Torregrosa, L.2    Segura, V.3    Bouquet, A.4    Martinez-Zapater, J.M.5
  • 24
    • 0033288823 scopus 로고    scopus 로고
    • Sure facts, speculations, and open questions about the evolution of transposable element copy number
    • Nuzhdin SV (1999) Sure facts, speculations, and open questions about the evolution of transposable element copy number. Genetica 107:129-137 (Pubitemid 129574959)
    • (1999) Genetica , vol.107 , Issue.1-3 , pp. 129-137
    • Nuzhdin, S.V.1
  • 27
    • 0027168422 scopus 로고
    • Activation of tobacco retrotransposons during tissue culture
    • Hirochika H (1993) Activation of tobacco retrotransposons during tissue culture. EMBO J 12(6):2521-2528 (Pubitemid 23194203)
    • (1993) EMBO Journal , vol.12 , Issue.6 , pp. 2521-2528
    • Hirochika, H.1
  • 28
    • 0029556272 scopus 로고
    • Evolution and biological significance of human retroelements
    • DOI 10.1007/BF01728654
    • Leib-Mosch C, Seifarth W (1995) Evolution and biological significance of human retroelements. Virus Genes 11:133-145 (Pubitemid 26186006)
    • (1995) Virus Genes , vol.11 , Issue.2-3 , pp. 133-145
    • Leib-Mosch, C.1    Seifarth, W.2
  • 29
    • 79251581868 scopus 로고    scopus 로고
    • A brief history of the status of transposable elements: From junk DNA to major players in evolution
    • Biemont C (2010) A brief history of the status of transposable elements: from junk DNA to major players in evolution. Genetics 186(4):1085-1093
    • (2010) Genetics , vol.186 , Issue.4 , pp. 1085-1093
    • Biemont, C.1
  • 30
    • 80051866116 scopus 로고    scopus 로고
    • Brasto, a stowaway MITE from brassica: Recently active copies preferentially accumulate in the gene space
    • Alix K, Sarilar V, Marmagne A, Brabant P, Joets J (2011) BraSto, a Stowaway MITE from Brassica: recently active copies preferentially accumulate in the gene space. Plant Mol Biol 77(1-2):59-75
    • (2011) Plant Mol Biol , vol.77 , Issue.1-2 , pp. 59-75
    • Alix, K.1    Sarilar, V.2    Marmagne, A.3    Brabant, P.4    Joets, J.5
  • 33
    • 34547592867 scopus 로고    scopus 로고
    • LTR-FINDER: An efficient tool for the prediction of full-length LTR retrotransposons
    • Wang H, Xu Z (2007) LTR-FINDER: an efficient tool for the prediction of full-length LTR retrotransposons. Nucleic Acids Res 35:W265-W268
    • (2007) Nucleic Acids Res , vol.35
    • Wang, H.1    Xu, Z.2
  • 34
    • 43949138227 scopus 로고    scopus 로고
    • Blast2go: A comprehensive suite for functional analysis in plant genomics
    • Conesa A, Gotz S (2008) Blast2GO: a comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics 2008:619832
    • (2008) Int J Plant Genomics , vol.2008 , pp. 619832
    • Conesa, A.1    Gotz, S.2
  • 35
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24(8):1596-1599 (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 36
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado PaR J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado Par, J.1
  • 37
    • 59949097135 scopus 로고    scopus 로고
    • Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome
    • Baucom RS, Estill JC, Leebens-Mack J, Bennetzen JL (2009) Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome. Genome Res 19(2):243-254
    • (2009) Genome Res , vol.19 , Issue.2 , pp. 243-254
    • Baucom, R.S.1    Estill, J.C.2    Leebens-Mack, J.3    Bennetzen, J.L.4
  • 38
    • 2342466982 scopus 로고    scopus 로고
    • Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice
    • DOI 10.1101/gr.1466204
    • Ma JX, Devos KM, Bennetzen JL (2004) Analyses of LTR-ret-rotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res 14(5):860-869 (Pubitemid 38660503)
    • (2004) Genome Research , vol.14 , Issue.5 , pp. 860-869
    • Ma, J.1    Devos, K.M.2    Bennetzen, J.L.3
  • 39
    • 0031984277 scopus 로고    scopus 로고
    • Epigenetic silencing of plant transgenes as a consequence of diverse cellular defence responses
    • DOI 10.1007/s000180050128
    • Matzke MA, Matzke AJ (1998) Epigenetic silencing of plant transgenes as a consequence of diverse cellular defence responses. Cell Mol Life Sci 54(1):94-103 (Pubitemid 28048253)
    • (1998) Cellular and Molecular Life Sciences , vol.54 , Issue.1 , pp. 94-103
    • Matzke, M.A.1    Matzke, A.J.M.2
  • 41
    • 77953761229 scopus 로고    scopus 로고
    • Transposon defense in drosophila somatic cells: A model for distinction of self and non-self in the genome
    • Forstemann K (2010) Transposon defense in Drosophila somatic cells: a model for distinction of self and non-self in the genome. RNA Biol 7(2):158-161
    • (2010) RNA Biol , vol.7 , Issue.2 , pp. 158-161
    • Forstemann, K.1
  • 42
    • 20044378849 scopus 로고    scopus 로고
    • Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication
    • DOI 10.1038/ng1576
    • Slotkin RK, Freeling M, Lisch D (2005) Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nat Genet 37(6):641-644 (Pubitemid 40770421)
    • (2005) Nature Genetics , vol.37 , Issue.6 , pp. 641-644
    • Slotkin, R.K.1    Freeling, M.2    Lisch, D.3
  • 43
    • 38549152196 scopus 로고    scopus 로고
    • Host genome surveillance for retrotransposons by transposon-derived proteins
    • DOI 10.1038/nature06499, PII NATURE06499
    • Cam HP, Noma K, Ebina H, Levin HL, Grewal SIS (2008) Host genome surveillance for retrotransposons by transposon-derived proteins. Nature 451(7177):431-436 (Pubitemid 351158888)
    • (2008) Nature , vol.451 , Issue.7177 , pp. 431-436
    • Cam, H.P.1    Noma, K.-I.2    Ebina, H.3    Levin, H.L.4    Grewal, S.I.S.5
  • 44
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • DOI 10.1038/nrg2072, PII NRG2072
    • Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8(4): 272-285 (Pubitemid 46439291)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.4 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 45
    • 23844451370 scopus 로고    scopus 로고
    • Host defenses to transposable elements and the evolution of genomic imprinting
    • DOI 10.1159/000084958
    • McDonald JF, Matzke MA, Matzke AJ (2005) Host defenses to transposable elements and the evolution of genomic imprinting. Cytogenet Genome Res 110(1-4):242-249 (Pubitemid 41159903)
    • (2005) Cytogenetic and Genome Research , vol.110 , Issue.1-4 , pp. 242-249
    • McDonald, J.F.1    Matzke, M.A.2    Matzke, A.J.3
  • 46
    • 77956369865 scopus 로고    scopus 로고
    • Transposable elements in a marginal plant population: Temporal fluctuations provide new insights into genome evolution of wild diploid wheat
    • Belyayev A, Kalendar R, Brodsky L, Nevo E, Schulman AH, Raskina O (2010) Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat. Mobile DNA 1(1):6
    • (2010) Mobile DNA , vol.1 , Issue.1 , pp. 6
    • Belyayev, A.1    Kalendar, R.2    Brodsky, L.3    Nevo, E.4    Schulman, A.H.5    Raskina, O.6
  • 47
    • 67650142756 scopus 로고    scopus 로고
    • Dynamics of trans-posable elements: Towards a community ecology of the genome
    • Venner S, Feschotte C, Biemont C (2009) Dynamics of trans-posable elements: towards a community ecology of the genome. Trends Genet 25(7):317-323
    • (2009) Trends Genet , vol.25 , Issue.7 , pp. 317-323
    • Venner, S.1    Feschotte, C.2    Biemont, C.3
  • 48
    • 77954452894 scopus 로고    scopus 로고
    • Enhancer/suppressor mutator (En/Spm)-like transposable elements of cassava (Manihot esculenta) are transcriptionally inactive
    • Gbadegesin MA, Beeching JR (2010) Enhancer/Suppressor mutator (En/Spm)-like transposable elements of cassava (Manihot esculenta) are transcriptionally inactive. Genet Mol Res 9(2):639-650
    • (2010) Genet Mol Res , vol.9 , Issue.2 , pp. 639-650
    • Gbadegesin, M.A.1    Beeching, J.R.2
  • 50
    • 0025013609 scopus 로고
    • Excision of the en/spm transposable element of zea mays requires two element-encoded proteins
    • Frey M, Reinecke J, Grant S, Saedler H, Gierl A (1990) Excision of the En/Spm transposable element of Zea mays requires two element-encoded proteins. EMBO J 9(12):4037-4044
    • (1990) EMBO J , vol.9 , Issue.12 , pp. 4037-4044
    • Frey, M.1    Reinecke, J.2    Grant, S.3    Saedler, H.4    Gierl, A.5


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