Microbedb: A locally maintainable database of microbial genomic sequences

Bioinformatics

Volumn 28, Issue 14, 2012, Pages 1947-1948

  Langille, Morgan G I ^a   Laird, Matthew R ^b   Hsiao, William W L ^c   Chiu, Terry A ^b   Eisen, Jonathan A ^d   Brinkman, Fiona S L ^b  

^a DALHOUSIE UNIVERSITY   (Canada)

^b SIMON FRASER UNIVERSITY   (Canada)

^c BRITISH COLUMBIA CENTRE FOR DISEASE CONTROL   (Canada)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS);

ARCHAEAL GENOME; ARTICLE; BACTERIAL GENOME; BIOLOGY; COMPUTER INTERFACE; COMPUTER PROGRAM; GENETIC DATABASE; GENOMICS; INTERNET; METHODOLOGY;

COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; GENOME, ARCHAEAL; GENOME, BACTERIAL; GENOMICS; INTERNET; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 84864131156     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts273     Document Type: Article

References (16)

1. Aziz, R. K. et al. (2008) The RAST Server: rapid annotations using subsystems technology. BMC genomics, 9, 75.
2. Beloslyudtsev, D. (2010) Aspera Transfer Guide. In: SRA Handbook. National Center for Biotechnology, Bethesda, MD.
3. Carver, T. et al. (2008) Artemis andACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics, 24, 2672-2676.
4. Davidsen, T. et al. (2010) The comprehensive microbial resource. NAR, 38, D340-D345.
5. Ho Sui, S. J. et al. (2009) The association of virulence factors with genomic islands. PloS ONE, 4, e8094.
6. Langille, M. G. I. and Brinkman, F. S. L. (2009) IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics, 25, 664-665.
7. Markowitz, V. M. et al. (2012) IMG: the integrated microbial genomes database and comparative analysis system. NAR, 40, D115-D22.
8. McQuilton, P. et al. (2011) FlyBase 101 - the basics of navigating FlyBase. NAR, 40, D706-D714.
9. Mungall, C. J. and Emmert, D. B. (2007)AChado case study: an ontology-based modular schema for representing genome-associated biological information. Bioinformatics, 23, i337-i346.
10. Pagani, I. et al. (2011) The Genomes OnLine Database (GOLD) v. 4: status of genomic and metagenomic projects and their associated metadata. NAR, 40, D571-D579.
11. Pruitt, K. D. et al. (2011) NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. NAR, 40, D130-D135.
12. Sayers, E. W. et al. (2011) Database resources of the National Center for Biotechnology Information. NAR, 40, D13-D25.
13. Stein, L. D. et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res., 12, 1599-1610.
14. Winstanley, C. et al. (2009) Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa. Genome Res., 19, 12-23.
15. Yook, K. et al. (2011) WormBase 2012: more genomes, more data, new website. NAR, 40, D735-D741.
16. Yu, N. Y. et al. (2010) PSORTb 3. 0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics, 26, 1608-1615.