Motifsuite: Workflow for probabilistic motif detection and assessment

Bioinformatics

Volumn 28, Issue 14, 2012, Pages 1931-1932

  Claeys, Marleen ^a   Storms, Valerie ^a   Sun, Hong ^a   Michoel, Tom ^b   Marchal, Kathleen ^a,c  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b UNIVERSITY OF FREIBURG   (Germany)

^c GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; COMPUTER PROGRAM; INTERNET; METHODOLOGY; PROTEIN TERTIARY STRUCTURE; SEQUENCE ANALYSIS;

ALGORITHMS; COMPUTATIONAL BIOLOGY; INTERNET; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE;

EID: 84864118790     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts293     Document Type: Article

References (10)

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3. Gama-Castro, S. et al. (2008) RegulonDB (version 6. 0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Res., 36, D120-D124.
4. Habib, N. et al. (2008) BLiC: A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval. PLoS Comput. Biol., 4, e1000010.
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9. Thijs, G. et al. (2002a) A Gibbs Sampling method to detect over-represented motifs in upstream regions of co-expressed genes. J. Comput. Biol., 9, 447-464.
10. Thijs, G. et al. (2002b) INCLUSive: Integrated Clustering, Upstream sequence retrieval and motif Sampling. Bioinformatics, 18, 331-332.