Gossamer - A resource-efficient de novo assembler

Bioinformatics

Volumn 28, Issue 14, 2012, Pages 1937-1938

  Conway, Thomas ^a   Wazny, Jeremy ^a   Bromage, Andrew ^a   Zobel, Justin ^a   Beresford smith, Bryan ^a  

^a UNIVERSITY OF MELBOURNE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

ALGORITHM; ARTICLE; BIOLOGY; COMPUTER PROGRAM; DNA SEQUENCE; HIGH THROUGHPUT SEQUENCING; METHODOLOGY;

ALGORITHMS; COMPUTATIONAL BIOLOGY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 84864117613     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts297     Document Type: Article

References (10)

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2. Conway, T. C. and Bromage, A. J. (2011) Succinct data structures for assembling large genomes. Bioinformatics, 27, 479-486.
3. Hernandez, D. et al. (2008) De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer. Genome Res., 18, 802-809.
4. Li, R. et al. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res., 20, 265-272.
5. Salzberg, S. L. et al. (2011) GAGE: a critical evaluation of genome assemblies and assembly algorithms. Genome Res., 22, 557-567.
6. Simpson, J. T. and Durbin, R. (2012) Efficient de novo assembly of large genomes using compressed data structures. Genome Res., 22, 549-556.
7. Simpson, J. T. et al. (2009) ABySS: a parallel assembler for short read sequence data. Genome Res., 19, 1117-1123.
8. Warren, R. L. et al. (2006) Assembling millions of short dna sequences using ssake. Bioinformatics, 23, 500-501.
9. Zerbino, D. R. and Birney, E. (2008) Velvet: algorithms for de novo short read assembly using de bruijn graphs. Genome Res., 18, 821-829.
10. Zerbino, D. R. et al. (2009) Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler. PLoS ONE, 4, e8407.