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Volumn 8, Issue 4, 2012, Pages 714-718

MSClust: A tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data

Author keywords

Alignment; Data analysis; Fuzzy clustering; Metabolomics; Software

Indexed keywords

ALGORITHM; ARTICLE; CHROMATOGRAPHY; COMPUTER PROGRAM; INFORMATION PROCESSING; LIQUID CHROMATOGRAPHY; MASS FRAGMENTOGRAPHY; MASS SPECTROMETRY; METABOLOMICS;

EID: 84864062924     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-011-0368-2     Document Type: Article
Times cited : (173)

References (21)
  • 1
    • 33747817029 scopus 로고    scopus 로고
    • Technical problems and practical operations in plant metabolomics
    • Bamba, T., & Fukusaki, E. (2006). Technical problems and practical operations in plant metabolomics. Journal of Pesticide Science, 31, 300-304.
    • (2006) Journal of Pesticide Science , vol.31 , pp. 300-304
    • Bamba, T.1    Fukusaki, E.2
  • 2
    • 77249175352 scopus 로고    scopus 로고
    • Knowledge discovery in metabolomics: An overview of MS data handling
    • Boccard, J., Veuthey, J. L., & Rudaz, S. (2010). Knowledge discovery in metabolomics: An overview of MS data handling. Journal of Separation Science, 33, 290-304.
    • (2010) Journal of Separation Science , vol.33 , pp. 290-304
    • Boccard, J.1    Veuthey, J.L.2    Rudaz, S.3
  • 3
    • 84974743850 scopus 로고
    • Fuzzy model identification based on cluster estimation
    • Chiu, S. L. (1994). Fuzzy model identification based on cluster estimation. Journal of Intelligent and Fuzzy Systems, 2, 267-278.
    • (1994) Journal of Intelligent and Fuzzy Systems , vol.2 , pp. 267-278
    • Chiu, S.L.1
  • 4
    • 34248512719 scopus 로고    scopus 로고
    • Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry
    • De Vos, R. C. H., Moco, S., Lommen, A., Keurentjes, J. J. B., Bino, R. J., & Hall, R. D. (2007). Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry. Nature Protocols, 2, 778-791.
    • (2007) Nature Protocols , vol.2 , pp. 778-791
    • de Vos, R.C.H.1    Moco, S.2    Lommen, A.3    Keurentjes, J.J.B.4    Bino, R.J.5    Hall, R.D.6
  • 5
    • 39649122630 scopus 로고    scopus 로고
    • Metabolomic investigation of the response of the model plant Arabidopsis thaliana to cadmium exposure: Evaluation of data pretreatment methods for further statistical analyses
    • Ducruix, C., Vailhen, D., Werner, E., Fievet, J. B., Bourguignon, J., Tabet, J. C., et al. (2008). Metabolomic investigation of the response of the model plant Arabidopsis thaliana to cadmium exposure: Evaluation of data pretreatment methods for further statistical analyses. Chemometrics and Intelligent Laboratory Systems, 91, 67-77.
    • (2008) Chemometrics and Intelligent Laboratory Systems , vol.91 , pp. 67-77
    • Ducruix, C.1    Vailhen, D.2    Werner, E.3    Fievet, J.B.4    Bourguignon, J.5    Tabet, J.C.6
  • 6
    • 44349092469 scopus 로고    scopus 로고
    • Metabolite annotations based on the integration of mass spectral information
    • Iijima, Y., Nakamura, Y., Ogata, Y., Tanaka, K., Sakurai, N., Suda, K., et al. (2008). Metabolite annotations based on the integration of mass spectral information. Plant Journal, 54, 949-962.
    • (2008) Plant Journal , vol.54 , pp. 949-962
    • Iijima, Y.1    Nakamura, Y.2    Ogata, Y.3    Tanaka, K.4    Sakurai, N.5    Suda, K.6
  • 7
    • 33644867564 scopus 로고    scopus 로고
    • MZmine: Toolbox for processing and visualization of mass spectrometry based molecular profile data
    • Katajamaa, M., Miettinen, J., & Oresic, M. (2006). MZmine: Toolbox for processing and visualization of mass spectrometry based molecular profile data. Bioinformatics, 22, 634-636.
    • (2006) Bioinformatics , vol.22 , pp. 634-636
    • Katajamaa, M.1    Miettinen, J.2    Oresic, M.3
  • 9
    • 33947216093 scopus 로고    scopus 로고
    • A comprehensive urinary metabolomic approach for identifying kidney cancerr
    • Kind, T., Tolstikov, V., Fiehn, O., & Weiss, R. H. (2007). A comprehensive urinary metabolomic approach for identifying kidney cancerr. Analytical Biochemistry, 363, 185-195.
    • (2007) Analytical Biochemistry , vol.363 , pp. 185-195
    • Kind, T.1    Tolstikov, V.2    Fiehn, O.3    Weiss, R.H.4
  • 10
    • 65249132985 scopus 로고    scopus 로고
    • Metalign: Interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing
    • Lommen, A. (2009). Metalign: Interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing. Analytical Chemistry, 81, 3079-3086.
    • (2009) Analytical Chemistry , vol.81 , pp. 3079-3086
    • Lommen, A.1
  • 12
    • 60549109691 scopus 로고    scopus 로고
    • Development and validation of a gas chromatography/mass spectrometry method for the metabolic profiling of human colon tissue
    • Mal, M., Koh, P. K., Cheah, P. Y., & Chan, E. C. Y. (2009). Development and validation of a gas chromatography/mass spectrometry method for the metabolic profiling of human colon tissue. Rapid Communications in Mass Spectrometry, 23, 487-494.
    • (2009) Rapid Communications in Mass Spectrometry , vol.23 , pp. 487-494
    • Mal, M.1    Koh, P.K.2    Cheah, P.Y.3    Chan, E.C.Y.4
  • 13
    • 33747137944 scopus 로고    scopus 로고
    • A liquid chromatography-mass spectrometry-based metabolome database for tomato
    • Moco, S., Bino, R. J., Vorst, O., Verhoeven, H. A., De Groot, J., van Beek, T. A., et al. (2006). A liquid chromatography-mass spectrometry-based metabolome database for tomato. Plant Physiology, 141, 1205-1218.
    • (2006) Plant Physiology , vol.141 , pp. 1205-1218
    • Moco, S.1    Bino, R.J.2    Vorst, O.3    Verhoeven, H.A.4    de Groot, J.5    van Beek, T.A.6
  • 14
    • 33646743247 scopus 로고    scopus 로고
    • Nonlinear data alignment for UPLC-MS and HPLC-MS based metabolomics: Quantitative analysis of endogenous and exogenous metabolites in human serum
    • Nordström, A., O'Maille, G., Qin, C., & Siuzdak, G. (2006). Nonlinear data alignment for UPLC-MS and HPLC-MS based metabolomics: Quantitative analysis of endogenous and exogenous metabolites in human serum. Analytical Chemistry, 78, 3289-3295.
    • (2006) Analytical Chemistry , vol.78 , pp. 3289-3295
    • Nordström, A.1    O'Maille, G.2    Qin, C.3    Siuzdak, G.4
  • 15
    • 67449147120 scopus 로고    scopus 로고
    • Parameter selection for peak alignment in chromatographic sample profiling: Objective quality indicators and use of control samples
    • Peters, S., van Velzen, E., & Janssen, H. G. (2009). Parameter selection for peak alignment in chromatographic sample profiling: Objective quality indicators and use of control samples. Analytical and Bioanalytical Chemistry, 394, 1273-1281.
    • (2009) Analytical and Bioanalytical Chemistry , vol.394 , pp. 1273-1281
    • Peters, S.1    van Velzen, E.2    Janssen, H.G.3
  • 16
    • 68849092098 scopus 로고    scopus 로고
    • Metabolomics approach to anabolic steroid urine profiling of bovines treated with prohormones
    • Rijk, J. C. W., Lommen, A., Essers, M. L., Groot, M. J., van Hende, J. M., Doeswijk, T. G., et al. (2009). Metabolomics approach to anabolic steroid urine profiling of bovines treated with prohormones. Analytical Chemistry, 81, 6879-6888.
    • (2009) Analytical Chemistry , vol.81 , pp. 6879-6888
    • Rijk, J.C.W.1    Lommen, A.2    Essers, M.L.3    Groot, M.J.4    van Hende, J.M.5    Doeswijk, T.G.6
  • 17
    • 32444446805 scopus 로고    scopus 로고
    • XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
    • Smith, C. A., Want, E. J., O'Maille, G., Abagyan, R., & Siuzdak, G. (2006). XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Analytical Chemistry, 78, 779-787.
    • (2006) Analytical Chemistry , vol.78 , pp. 779-787
    • Smith, C.A.1    Want, E.J.2    O'Maille, G.3    Abagyan, R.4    Siuzdak, G.5
  • 18
    • 33344469496 scopus 로고    scopus 로고
    • A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles
    • Tikunov, Y., Lommen, A., De Vos, C. H. R., Verhoeven, H. A., Bino, R. J., Hall, R. D., et al. (2005). A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles. Plant Physiology, 139, 1125-1137.
    • (2005) Plant Physiology , vol.139 , pp. 1125-1137
    • Tikunov, Y.1    Lommen, A.2    de Vos, C.H.R.3    Verhoeven, H.A.4    Bino, R.J.5    Hall, R.D.6
  • 19
    • 73249146299 scopus 로고    scopus 로고
    • A role for differential glycoconjugation in the emission of phenylpropanoid volatiles from tomato fruit discovered using a metabolic data fusion approach
    • Tikunov, Y. M., de Vos, R. C. H., Paramas, A. M. G., Hall, R. D., & Bovy, A. G. (2010). A role for differential glycoconjugation in the emission of phenylpropanoid volatiles from tomato fruit discovered using a metabolic data fusion approach. Plant Physiology, 152, 55-70.
    • (2010) Plant Physiology , vol.152 , pp. 55-70
    • Tikunov, Y.M.1    de Vos, R.C.H.2    Paramas, A.M.G.3    Hall, R.D.4    Bovy, A.G.5
  • 20
    • 20344375968 scopus 로고    scopus 로고
    • A non-directed approach to the differential analysis of multiple LC-MS-derived metabolic profiles
    • Vorst, O., de Vos, C. H. R., Lommen, A., Staps, R. V., Visser, R. G. F., Bino, R. J., et al. (2005). A non-directed approach to the differential analysis of multiple LC-MS-derived metabolic profiles. Metabolomics, 1, 169-180.
    • (2005) Metabolomics , vol.1 , pp. 169-180
    • Vorst, O.1    de Vos, C.H.R.2    Lommen, A.3    Staps, R.V.4    Visser, R.G.F.5    Bino, R.J.6
  • 21
    • 36649020263 scopus 로고    scopus 로고
    • Metabolomics identifies perturbations in human disorders of propionate metabolism
    • Wikoff, W. R., Gangoiti, J. A., Barshop, B. A., & Siuzdak, G. (2007). Metabolomics identifies perturbations in human disorders of propionate metabolism. Clinical Chemistry, 53, 2169-2176.
    • (2007) Clinical Chemistry , vol.53 , pp. 2169-2176
    • Wikoff, W.R.1    Gangoiti, J.A.2    Barshop, B.A.3    Siuzdak, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.