Biomedical event extraction from abstracts and full papers using search-based structured prediction

Proceedings of BioNLP Shared Task 2011 Workshop at the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies, ACL HLT 2011

Volumn , Issue , 2011, Pages 36-40

  Vlachos, Andreas ^a   Craven, Mark ^a  

^a UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EXTRACTION; NATURAL LANGUAGE PROCESSING SYSTEMS;

ADAPTATION METHODS; DOMAIN ADAPTATION; EVENTS EXTRACTIONS; INFERENCE SYSTEMS; SEARCH-BASED; SIMPLE++; STRUCTURED PREDICTION;

ABSTRACTING;

EID: 84864059411     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (11)

1. Eugene Charniak and Mark Johnson. 2005. Coarse-to-fine n-best parsing and MaxEnt discriminative reranking. In Proceedings of the 43rd Annual Meeting on Association for Computational Linguistics, pages 173–180.
2. Koby Crammer, Ofer Dekel, Joseph Keshet, Shai Shalev-Shwartz, and Yoram Singer. 2006. Online passive-aggressive algorithms. Journal of Machine Learning Research, 7:551–585.
3. Hal Daumé III, John Langford, and Daniel Marcu. 2009. Search-based structured prediction. Machine Learning, 75:297–325.
4. Hal Daumé III. 2007. Frustratingly easy domain adaptation. In Proceedings of the 45th Annual Meeting of the Association for Computational Linguistics, pages 256–263.
5. Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, and Jun’ichi Tsujii. 2009. Overview of BioNLP’09 shared task on event extraction. In Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pages 1–9.
6. Jin-Dong Kim, Yue Wang, Toshihisa Takagi, and Akinori Yonezawa. 2011. Overview of the Genia Event task in BioNLP Shared Task 2011. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task.
7. David McClosky. 2010. Any domain parsing: Automatic domain adaptation for natural language parsing. Ph.D. thesis, Department of Computer Science, Brown University.
8. Guido Minnen, John Carroll, and Darren Pearce. 2001. Applied morphological processing of English. Natural Language Engineering, 7(3):207–223.
9. Hoifung Poon and Lucy Vanderwende. 2010. Joint inference for knowledge extraction from biomedical literature. In Proceedings of the Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics, pages 813–821.
10. Pontus Stenetorp, Goran Topić, Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, and Jun’ichi Tsujii. 2011. BioNLP Shared Task 2011: Supporting Resources. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task.
11. Andreas Vlachos and Mark Craven. 2011. Search-based structured prediction applied to biomedical event extraction. In Proceedings of the Fifteenth Conference on Computational Natural Language Learning.