Understanding the y chromosome variation in Korea\-relevance of combined haplogroup and haplotype analyses

International Journal of Legal Medicine

Volumn 126, Issue 4, 2012, Pages 589-599

  Park, Myung Jin ^a   Lee, Hwan Young ^a,b   Yang, Woo Ick ^a   Shin, Kyoung Jin ^a,b  

^a Yonsei University College of Medicine   (South Korea)

^b Yonsei University   (South Korea)

Author keywords

Atypical allele; Haplogroup; Korean; Short tandem repeat; Single nucleotide polymorphism; Y chromosome

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; ASIAN; GENETIC MARKER; GENETICS; HAPLOTYPE; HUMAN; MALE; PHYLOGENY; POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTH KOREA; Y CHROMOSOME;

ASIAN CONTINENTAL ANCESTRY GROUP; CHROMOSOMES, HUMAN, Y; GENETIC MARKERS; HAPLOTYPES; HUMANS; MALE; MICROSATELLITE REPEATS; PHYLOGENY; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; REPUBLIC OF KOREA;

EID: 84864041430     PISSN: 09379827     EISSN: 14371596     Source Type: Journal    
DOI: 10.1007/s00414-012-0703-9     Document Type: Article

References (36)

1. Jobling MA, Pandya A, Tyler-Smith C (1997) The Y chromosome in forensic analysis andpaternitytesting. IntJLegalMed 110:118-124
2. Jobling MA, Tyler-Smith C (2000) New uses for new haplotypes the human Y chromosome, disease and selection. Trends Genet 16:356-362 (Pubitemid 30628837)
3. Jobling MA (2001) In the name of the father: surnames and Genetics. Trends Genet 17:353-357 (Pubitemid 32497117)
4. Underhill PA, Shen P, Lin AA et al (2000) Y chromosome se-quence variation and the history of human populations. Nat Genet 26:358-361
5. Jobling MA, Tyler-Smith C (2003) The human Y chromosome: an evolutionary marker comes ofage. Nat Rev Genet 4:598-612 (Pubitemid 36917502)
6. Roewer L, Croucher PJ, Willuweit S et al (2005) Signature of recent historical events in the European Y-chromosomal STR haplotype distribution. Hum Genet 116:279-291 (Pubitemid 40277240)
7. Roewer L, Kayser M, Dieltjes P, Nagy M, Bakker E, Krawczak M, de KnijffP (1997) Analysis ofmolecular variance (AMOVA) of Y-chromosome-specific microsatellites in two closely related popu-lations. Hum Mol Genet 5:1029-1033 (Pubitemid 26232287)
8. Butler JM (2003) Recent developments in Y-short tandem repeat and Y-single nucleotide polymorphism analysis. Forensic Sci Rev 15:91-111
9. Jobling MA (2001) Y-chromosomal SNP haplotype diversity in forensic analysis. Forensic Sci Int 118:158-162 (Pubitemid 32331906)
10. Bosch E, Calafell F, Santos FR et al (1999) Variation in short tandem repeats is deeply structured by Genetic background on the human Y chromosome. Am J Hum Genet 65:1623-1638 (Pubitemid 30468675)
11. Schlecht J, Kaplan ME, Barnard K, Karafet T, Hammer MF, Merchant NC (2008) Machine-learning approaches for classifying haplogroup from Y chromosome STR data. PLoS Comput Biol 4:e1000093
12. Athey TW (2005) Haplogroup prediction from Y-STR values using an allele-frequency approach. J Genet Geneal 1:1-7
13. Kayser M, Brauer S, Weiss G, Schiefenhövel W, Underhill PA, Stoneking M (2001) Independent histories of human Y chromo-somes from MelanesiaandAustralia. Am JHum Genet 68:173-190 (Pubitemid 32048372)
14. Myres NM, Ekins JE, Lin AA, Cavalli-Sforza LL, Woodward SR Underhill PA (2007) Y-chromosome short tandem repeat DYS458.2 non-consensus alleles occur independently in both binary hap-logroups J1-M267 and R1b3-M405. Croat Med J 48:450-459 (Pubitemid 47330045)
15. Myres NM, Ritchie KH, Lin AA, Hughes RH, Woodward SR, Underhill PA (2009) Y-chromosome short tandem repeat interme-diate variant alleles DYS392.2, DYS449.2, and DYS385.2 delin-eate new phyloGenetic substructure in human Y-chromosome haplogroup tree. Croat Med J 50:239-349
16. Robino C, Crobu F, Di Gaetano C et al (2008) Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample. Int J Legal Med 122:251-255 (Pubitemid 351534091)
17. Willuweit S, Roewer L, International Forensic Y Chromosome User Group (2007) Y chromosome haplotype reference database (YHRD): update. Forensic Sci Int Genet 1:83-87 (Pubitemid 46760391)
18. Onofri V, Alessandrini F, Turchi C, Fraternale B, Buscemi L, Pesaresi M, Tagliabracci A (2007) Y-chromosome Genetic struc-ture in sub-Apennine populations of Central Italy by SNP and STR analysis. Int J Legal Med 121:234-237 (Pubitemid 46866582)
19. Nonaka I, Minaguchi K, Takezaki N (2007) Y-chromosomal bina-ry haplogroups in the Japanese population and their relationship to 16 Y-STR polymorphisms. Ann Hum Genet 71:480-495 (Pubitemid 46865496)
20. Kim SH, Han MS, Kim W, Kim W (2010) Y chromosome homo-geneity in the Korean population. Int J Legal Med 124:653-657
21. Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF (2008) New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res 18:830-838 (Pubitemid 351645073)
22. Yan S, Wang CC, Li H, Li SL, Jin L, Genographic Consortium (2011) An updated tree of Y-chromosome Haplogroup O and revised phyloGenetic positions ofmutations P164 and PK4. Eur J Hum Genet 19:1013-1015
23. Kim SH, Kim KC, Shin DJ et al (2011) High frequencies of Y-chromosome haplogroup O2b-SRY465 lineages in Korea: a genet-ic perspective on the peopling of Korea. Investig Genet 2:10
24. Park MJ, Lee HY, Yoo JE, Chung U, Lee SY, Shin KJ (2005) Forensic evaluation and haplotypes of 19 Y-chromosomal STR loci in Koreans. Forensic Sci Int 152:133-147 (Pubitemid 40839280)
25. Lee HY, Park MJ, Chung U, Lee HY, Yang WI, Cho SH, Shin KJ (2007) Haplotypes and mutation analysis of 22 Y-chromosomal STRs in Korean father-son pairs. Int J Legal Med 121:128-135 (Pubitemid 46233193)
26. Park MJ, Lee HY, Kim NY, Sim JE, Yang WI, Cho SH, Shin KJ (2007) Genetic characteristics of 22 Y-STR loci in Koreans. Korean J Leg Med 31:162-170
27. Park MJ, Shin KJ, Kim NY, Yang WI, Cho SH, Lee HY (2008) Characterization of deletions in the DYS385 flanking region and null alleles associated with AZFc microdeletions in Koreans. J Forensic Sci 53:331-334 (Pubitemid 351432618)
28. Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population Genetics analyses under Linux and Windows. Mol Ecol Resour 10:564-567
29. Gomes V, Sánchez-Diz P, Amorim A, Carracedo A, Gusmão L (2010) Digging deeper into East African human Y chromosome lineages. Hum Genet 127:603-613
30. Parson W, Roewer L (2010) Publication of population data of linearly inherited DNA markers in the International Journal of Legal Medicine. Int J Legal Med 124:505-509
31. Balaresque P, Bowden GR, Parkin EJ et al (2008) Dynamic nature of the proximal AZFc region of the human Y chromosome: mul-tiple independent deletion and duplication events revealed by microsatellite analysis. Hum Mutat 29:1171-1180
32. Karafet TM, Hallmark B, Cox MP, Sudoyo H, Downey S, Lansing JS, Hammer MF (2010) Major east-west division underlies Y chromo-some stratification across Indonesia. Mol Biol Evol 27:1833-1844
33. Gusmão L, Krawczak M, Sánchez-Diz P et al (2003) Bimodal allele frequency distribution at Y-STR loci DYS392 and DYS438: no evidence for a deviation from the stepwise mutation model. Int J Legal Med 117:287-290 (Pubitemid 37356102)
34. Ballantyne KN, Keerl V, Wollstein A et al (2012) A new future of forensic Y-chromosome analysis: rapidly mutating Y-STRs for differentiating male relatives and paternal lineages. Forensic Sci Int Genet 6:208-218
35. Cinnioǧlu C, King R, Kivisild T et al (2004) Excavating Y-chromosome haplotype strata in Anatolia. Hum Genet 114:127-148
36. Shi H, Dong YL, Wen B et al (2005) Y-chromosome evidence of southern origin of the East Asian-specific haplogroup O3-M122. Am J Hum Genet 77:408-419 (Pubitemid 41192647)