The diversity of the pathogenic Oomycete (Aphanomyces astaci) chitinase genes within the genotypes indicate adaptation to its hosts

Fungal Genetics and Biology

Volumn 49, Issue 8, 2012, Pages 635-642

  Makkonen, Jenny ^a   Jussila, Japo ^a   Kokko, Harri ^a  

^a UNIVERSITY OF EASTERN FINLAND   (Finland)

Author keywords

Aphanomyces astaci; Chitinase; Genetic diversity; Genotype

Indexed keywords

ADAPTATION; APHANOMYCES; APHANOMYCES ASTACI; ARTICLE; CHI1 GENE; CHI2 GENE; CHI2A GENE; CHI2B GENE; CHI2C GENE; CHI3 GENE; CHITINASE GENE; CONTROLLED STUDY; FUNGAL GENE; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC CODE; GENETIC VARIABILITY; GENOTYPE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; SEQUENCE HOMOLOGY;

ADAPTATION, BIOLOGICAL; APHANOMYCES; BASE SEQUENCE; CHITINASE; GENOTYPE; HOST-PATHOGEN INTERACTIONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; SEQUENCE ALIGNMENT;

APHANOMYCES ASTACI; ASTACOIDEA;

EID: 84864033849     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2012.05.014     Document Type: Article

References (50)

1. Alderman D.J. Geographical spread of bacterial and fungal diseases of crustaceans. Rev. Sci. Tech. 1996, 15:603-632.
2. Alderman D.J., Polglase J.L. Pathogens, parasites and commensals. Freshwater Crayfish: Biology, Management and Exploitation 1988, 167-235. Croom Helm, London. D.M. Holdich, R.S. Lowery (Eds.).
3. Andersson M.G., Cerenius L. Analysis of chitinase expression in the crayfish plague fungus Aphanomyces astaci. Dis. Aquat. Organ. 2002, 51:139-147.
4. Cerenius L., Andersson M.G., Söderhäll K. Aphanomyces astaci and crustaceans. Oomycete Genetics and Genomics: Diversity, Interactions and Research Tools 2009, 425-433. John Wiley & Sons, Inc., Hoboken, NJ. K. Lamour, S. Kamoun (Eds.).
5. Cornalia E. Sulla malattia dei gamberi. Atti. Soc. Ital. Sci. Nat. 1860, 2:334-336.
6. Diéguez-Uribeondo J., Söderhäll K. Procambarus clarkii Girard as a vector for the crayfish plague fungus, Aphanomyces astaci Schikora. Aquacult. Fish. Manage. 1993, 24(6):761-765.
7. Diéguez-Uribeondo J., Huang T., Cerenius L. Physiological adaptation of an Aphanomyces astaci strain isolated from the freshwater crayfish Procambarus clarkii. Mycol. Res. 1995, 99:574-578.
8. Diéguez-Uribeondo J., Garcia M.A., Cerenius L., Kozubíková E., Ballesteros I., Windels C., Weiland J., Kator H., Söderhäll K., Martin M.P. Phylogenetic relationships among plant and animal parasites, and saprotrophs in Aphanomyces (Oomycetes). Fungal Genet. Biol. 2009, 46:365-376.
9. Drummond, A.J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Duran, C., Field, M., Heled, J., Kearse, M., Markowitz, S., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T., Wilson, A., 2011. Geneious v5.4. http://www.geneious.com/.
10. Ebert D. Virulence and local adaptation of a horizontally transmitted parasite. Science 1994, 265:1084-1086.
11. Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
12. Hobbs H.H. Crayfish distribution, adaptive radiation and evolution. Freshwater Crayfish: Biology, Management and Exploitation 1988, 52-82. Croom Helm, London. D.M. Holdich, R.S. Lowery (Eds.).
13. Hochwimmer G., Tober R., Bibars-Reiter R., Licek E., Steinborn R. Identification of two GH18 chitinase family genes and their use as targets for detection of the crayfish-plague oomycete Aphanomyces astaci. BMC Microbiol. 2009, 9:184-201.
14. Huang T., Cerenius L., Söderhäll K. Analysis of genetic diversity in the crayfish plague fungus, Aphanomyces astaci, by random amplification of polymorphic DNA. Aquaculture 1994, 126:1-9.
15. Jussila J., Ojala K., Mannonen A. Noble crayfish (Astacus astacus) reintroduction project in the river Pyhäjoki, Western Finland: a case study. Freshw. Crayfish 2008, 16:51-56.
16. Jussila J., Makkonen J., Vainikka A., Kortet R., Kokko H. Latent crayfish plague (Aphanomyces astaci) infection in a robust wild noble crayfish (Astacus astacus) population. Aquaculture 2011, 321:17-20.
17. Kamoun S. Molecular genetics of pathogenic oomycetes. Eukar. Cell 2003, 2:191-199.
18. Karlsson M., Stenlid J. Comparative evolutionary histories of the fungal chitinase gene family reveal non-random size expansions and contractions due to adaptive natural selection. Evol. Bioinform. 2008, 4:47-60.
19. Kokko H., Koistinen L., Harlioĝlu M.M., Makkonen J., Aydi{dotless}n H., Jussila J. Recovering Turkish narrow clawed crayfish (Astacus leptodactylus) populations carry Aphanomyces astaci. Knowl. Managt. Aquat. Ecosyst. 2012, 404:1-7.
20. Kozubíková E., Viljamaa-Dirks S., Heinikainen S., Petrusek A. Spiny-cheek crayfish Orconectes limosus carry a novel genotype of the crayfish plague pathogen Aphanomyces astaci. J. Invertebr. Pathol. 2011, 108:214-216.
21. Lamour K.H., Win J., Kamoun S. Oomycete genomics: new insights and future directions. FEMS Microbiol. Lett. 2007, 274:1-8.
22. Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
23. Lilley J.H., Cerenius L., Söderhäll K. RAPD evidence for the origin of crayfish plague outbreaks in Britain. Aquaculture 1997, 157:181-185.
24. Makkonen J., Jussila J., Henttonen P., Kokko H. Crayfish plague (Aphanomyces astaci) can be vertically transferred during artificial incubation of crayfish eggs: preliminary results. Freshw. Crayfish 2010, 17:151-153.
25. Makkonen J., Jussila J., Henttonen P., Kokko H. Genetic variation in the ribosomal internal transcribed spacers of Aphanomyces astaci schikora from Finland. Aquaculture 2011, 311:48-53.
26. Minin V.N., Fang F., Dorman K.S., Suchard M.A. Dual multiple change-point model leads to more accurate recombination detection. Bioformatics 2005, 21:3034-3042.
27. Oidtmann B., Cerenius L., Schmid I., Hoffmann R.W., Söderhäll K. Crayfish plague epizootics in Germany - classification of two German isolates of the crayfish plague fungus, Aphanomyces astaci, by random amplification of polymorphic DNA. Dis. Aquat. Org. 1999, 35:235-238.
28. Oidtmann B., Heitz E., Rogers D., Hoffmann R.W. Transmission of crayfish plague. Dis. Aquat. Org. 2002, 52:159-167.
29. Oidtmann B., Geiger S., Steinbauer P., Culas A., Hoffmann R.W. Detection of Aphanomyces astaci in North American crayfish by polymerase chain reaction. Dis. Aquat. Org. 2006, 72:53-64.
30. Persson M., Söderhäll K. Pacifastacus leniusculus Dana and its resistance to the parasitic fungus Aphanomyces astaci Schikora. Freshw. Crayfish 1983, 5:292-298.
31. Qiu X., Wu L., Huang H., McDonel P.E., Palumbo A.V., Tiedje J.M., Zhou J. Evaluation of PCR generated chimeras, mutations, and heteroduplexes with 16 rRNA gene-based cloning. Appl. Environ. Microbiol. 2001, 67:880-887.
32. Raffaele S., Farrer R.A., Cano L.M., Studholme D.J., MacLean D., Thines M., Jiang R.H.Y., Zody M.C., Kunjeti S.G., Donofrio N.M., Meyers B.C., Nusbaum C., Kamoun S. Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science 2010, 330:1540-1543.
33. Royo F., Andersson G., Bangyeekhun E., Muzquiz J.L., Söderhäll K., Cerenius L. Physiological and genetic characterisation of some new Aphanomyces strains isolated from freshwater crayfish. Vet. Microb. 2004, 104:103-112.
34. Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132:365-386.
35. Schikora F. Die krebspest. Fischerei-Zeitung 1906, 9:529-532.
36. Seidl V., Huemer B., Seiboth B., Kubicek C.P. A complete survey of Trichoderma chitinases reveals three distinct subgroups of family 18 chitinases. FEBS J. 2005, 272:5923-5939.
37. Souty-Grosset, C., Holdich, D.M., Noël, P.Y., Reynolds, J., Haffner, P., 2006. Atlas of crayfish in Europe. Muséum National d'Histoire Naturelle, Paris.
38. Stukenbrock E., McDonald B. Population genetics of fungal and Oomycete effectors involved in gene-for-gene interactions. Mol. Plant Microbe Interact. 2009, 22:371-380.
39. Suchard M.A., Weiss R.E., Dorman K.S., Sinsheimer J.S. Inferring spatial phylogenetic variation along nucleotide sequences: a multiple changepoint model. J. Am. Stat. Assoc. 2003, 98:427-437.
40. Söderhäll K., Cerenius L. The crayfish plague fungus: history and recent advances. Freshw. Crayfish 1999, 12:11-35.
41. Tuffs S., Oidtmann B. A comparative study of molecular diagnostic methods designed to detect the crayfish plague pathogen, Aphanomyces astaci. Vet. Microbiol. 2011, 153:343-353.
42. Unestam T. Studies on the crayfish plague fungus Aphanomyces astaci I. Some factors affecting growth in vitro. Physiol. Plant. 1965, 18:483-505.
43. Unestam T. Chitinolytic, cellulolytic, and pectinolytic activity in vitro of some parasitic and saprophytic Oomycetes. Physiol. Plant. 1966, 19:15-30.
44. Unestam T. On the adaptation of Aphanomyces astaci as a parasite. Physiol. Plant. 1969, 22:221-235.
45. Unestam T. On the host range and origin of the crayfish plague fungus. Rep. Inst. Freshw. Res. Drottningholm 1972, 52:192-198.
46. Vennerström P., Söderhäll K., Cerenius L. The origin of two crayfish plague (Aphanomyces astaci) epizootics in Finland on noble crayfish, Astacus astacus. Ann. Zool. Fennici 1998, 35:43-46.
47. Vey A., Söderhäll K., Ajaxon R. Susceptibility of Orconectes limosus Raff. to the crayfish plague, Aphanomyces astaci Schikora. Freshw. Crayfish 1983, 5:284-291.
48. Viljamaa-Dirks S., Heinikainen S. Improved detection of crayfish plague with a modified isolation method. Freshw. Crayfish 2006, 15:376-382.
49. Viljamaa-Dirks S., Heinikainen S., Nieminen M., Vennerströn P., Pelkonen S. Persistent infection by crayfish plague Aphanomyces astaci in a noble crayfish population - a case report. Bull. Eur. Ass. Fish Pathol. 2011, 31:182-188.
50. Vrålstad T., Knutsen A.K., Tengs T., Holst-Jensen A. A quantitative TaqMan® MGB real-time polymerase chain reaction based assay for detection of the causative agent of crayfish plague Aphanomyces astaci. Vet. Microbiol. 2009, 137:146-155.