-
1
-
-
0015166645
-
The permeability of the sodium channel to organic cations in myelinated nerve
-
B. Hille The permeability of the sodium channel to organic cations in myelinated nerve J. Gen. Physiol. 58 1971 599 619
-
(1971)
J. Gen. Physiol.
, vol.58
, pp. 599-619
-
-
Hille, B.1
-
2
-
-
0015324606
-
The inner quaternary ammonium ion receptor in potassium channels of the node of ranvier
-
C.M. Armstrong, and B. Hille The inner quaternary ammonium ion receptor in potassium channels of the node of ranvier J. Gen. Physiol. 59 1972 388 400
-
(1972)
J. Gen. Physiol.
, vol.59
, pp. 388-400
-
-
Armstrong, C.M.1
Hille, B.2
-
3
-
-
0015357133
-
The permeability of the sodium channel to metal cations in myelinated nerve
-
B. Hille The permeability of the sodium channel to metal cations in myelinated nerve J. Gen. Physiol. 59 1972 637 658
-
(1972)
J. Gen. Physiol.
, vol.59
, pp. 637-658
-
-
Hille, B.1
-
4
-
-
0015881172
-
Potassium channels in myelinated nerve
-
B. Hille Potassium channels in myelinated nerve J. Gen. Physiol. 61 1973 669 686
-
(1973)
J. Gen. Physiol.
, vol.61
, pp. 669-686
-
-
Hille, B.1
-
5
-
-
0018117903
-
Potassium channels as multi-ion single-file pores
-
DOI 10.1085/jgp.72.4.409
-
B. Hille, and W. Schwarz Potassium channels as multi-ion single-file pores J. Gen. Physiol. 72 1978 409 442 (Pubitemid 9002761)
-
(1978)
Journal of General Physiology
, vol.72
, Issue.4
, pp. 409-442
-
-
Hille, B.1
Schwarz, W.2
-
6
-
-
0018826901
-
The permeability of the endplate channel to organic cations in frog muscle
-
T.M. Dwyer, D.J. Adams, and B. Hille The permeability of the endplate channel to organic cations in frog muscle J. Gen. Physiol. 75 1980 469 492 (Pubitemid 10103806)
-
(1980)
Journal of General Physiology
, vol.75
, Issue.5
, pp. 469-492
-
-
Dwyer, T.M.1
Adams, D.J.2
Hille, B.3
-
7
-
-
0014607213
-
Inactivation of the potassium conductance and related phenomena caused by quaternary ammonium ion injection in squid axons
-
C.M. Armstrong Inactivation of the potassium conductance and related phenomena caused by quaternary ammonium ion injection in squid axons J. Gen. Physiol. 54 1969 553 575
-
(1969)
J. Gen. Physiol.
, vol.54
, pp. 553-575
-
-
Armstrong, C.M.1
-
8
-
-
0015424492
-
Negative conductance caused by entry of sodium and cesium ions into the potassium channels of squid axons
-
F. Bezanilla, and C.M. Armstrong Negative conductance caused by entry of sodium and cesium ions into the potassium channels of squid axons J. Gen. Physiol. 60 1972 588 608
-
(1972)
J. Gen. Physiol.
, vol.60
, pp. 588-608
-
-
Bezanilla, F.1
Armstrong, C.M.2
-
9
-
-
0018630239
-
Fast and slow steps in the activation of sodium channels
-
DOI 10.1085/jgp.74.6.691
-
C.M. Armstrong, and W.F. Gilly Fast and slow steps in the activation of sodium channels J. Gen. Physiol. 74 1979 691 711 (Pubitemid 10161573)
-
(1979)
Journal of General Physiology
, vol.74
, Issue.6
, pp. 691-711
-
-
Armstrong, C.M.1
Gilly, W.F.2
-
10
-
-
0032478818
-
+ conduction and selectivity
-
DOI 10.1126/science.280.5360.69
-
+ conduction and Selectivity Science 280 1998 69 77 (Pubitemid 28169082)
-
(1998)
Science
, vol.280
, Issue.5360
, pp. 69-77
-
-
Doyle, D.A.1
Cabral, J.M.2
Pfuetzner, R.A.3
Kuo, A.4
Gulbis, J.M.5
Cohen, S.L.6
Chait, B.T.7
MacKinnon, R.8
-
12
-
-
0037198626
-
Crystal structure and mechanism of a calcium-gated potassium channel
-
DOI 10.1038/417515a
-
Y. Jiang, A. Lee, J. Chen, M. Cadene, B.T. Chait, and R. MacKinnon Crystal structure and mechanism of a calcium-gated potassium channel Nature 417 2002 515 522 (Pubitemid 34595912)
-
(2002)
Nature
, vol.417
, Issue.6888
, pp. 515-522
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Cadene, M.4
Chait, B.T.5
MacKinnon, R.6
-
13
-
-
0038076054
-
+ channel
-
DOI 10.1038/nature01580
-
+ channel Nature 423 2003 33 41 (Pubitemid 36569577)
-
(2003)
Nature
, vol.423
, Issue.6935
, pp. 33-41
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Ruta, V.4
Cadene, M.5
Chait, B.T.6
MacKinnon, R.7
-
15
-
-
0034690250
-
Ion permeation mechanism of the potassium channel
-
DOI 10.1038/35009114
-
J. Aqvist, and V. Luzhkov Ion permeation mechanism of the potassium channel Nature 404 2000 881 884 (Pubitemid 30230340)
-
(2000)
Nature
, vol.404
, Issue.6780
, pp. 881-884
-
-
Aqvist, J.1
Luzhkov, V.2
-
18
-
-
58149250085
-
High-resolution structure of the open NaK channel
-
A. Alam, and Y. Jiang High-resolution structure of the open NaK channel Nat. Struct. Mol. Biol. 16 2009 30 34
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 30-34
-
-
Alam, A.1
Jiang, Y.2
-
19
-
-
0032750783
-
Molecular dynamics study of the KcsA potassium channel
-
T.W. Allen, S. Kuyucak, and S.-H. Chung Molecular dynamics study of the KcsA potassium channel Biophys. J. 77 1999 2502 2516 (Pubitemid 29519497)
-
(1999)
Biophysical Journal
, vol.77
, Issue.5
, pp. 2502-2516
-
-
Allen, T.W.1
Kuyucak, S.2
Chung, S.-H.3
-
20
-
-
0034036372
-
Simulations of ion permeation through a potassium channel: Molecular dynamics of KcsA in a phospholipid bilayer
-
I.H. Shrivastava, and M.S.P. Sansom Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer Biophys. J. 78 2000 557 570 (Pubitemid 30211816)
-
(2000)
Biophysical Journal
, vol.78
, Issue.2
, pp. 557-570
-
-
Shrivastava, I.H.1
Sansom, M.S.P.2
-
21
-
-
0035498860
-
+ channel
-
DOI 10.1038/35102067
-
+ channel Nature 414 2001 73 77 (Pubitemid 33041625)
-
(2001)
Nature
, vol.414
, Issue.6859
, pp. 73-77
-
-
Berneche, S.1
Roux, B.2
-
23
-
-
0242405514
-
Ion channel gating: Insights via molecular simulations
-
DOI 10.1016/S0014-5793(03)01151-7
-
O. Beckstein, P.C. Biggin, P. Bond, J.N. Bright, C. Domene, A. Grottesi, J. Holyoake, and M.S.P. Sansom Ion channel gating: insights via molecular simulations FEBS Lett. 555 2003 85 90 (Pubitemid 37431102)
-
(2003)
FEBS Letters
, vol.555
, Issue.1
, pp. 85-90
-
-
Beckstein, O.1
Biggin, P.C.2
Bond, P.3
Bright, J.N.4
Domene, C.5
Grottesi, A.6
Holyoake, J.7
Sansom, M.S.P.8
-
24
-
-
0038298804
-
Modeling permeation energetics in the KcsA potassium channel
-
S. Garofoli, and P.C. Jordan Modeling permeation energetics in the KcsA potassium channel Biophys. J. 84 2003 2814 2830 (Pubitemid 36531737)
-
(2003)
Biophysical Journal
, vol.84
, Issue.5
, pp. 2814-2830
-
-
Garofoli, S.1
Jordan, P.C.2
-
25
-
-
1042275568
-
Molecular dynamics study of the KcsA channel at 2.0-A resolution: Stability and concerted motions within the pore
-
DOI 10.1016/j.bbamem.2003.11.019
-
M. Compoint, P. Carloni, C. Ramseyer, and C. Girardet Molecular dynamics study of the KcsA channel at 2.0-Å resolution: stability and concerted motions within the pore Biochim. Biophys. Acta-Biomembr. 1661 2004 26 39 (Pubitemid 38201569)
-
(2004)
Biochimica et Biophysica Acta - Biomembranes
, vol.1661
, Issue.1
, pp. 26-39
-
-
Compoint, M.1
Carloni, P.2
Ramseyer, C.3
Girardet, C.4
-
26
-
-
7244251461
-
Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands
-
DOI 10.1038/nature02943
-
S.Y. Noskov, S. Berneche, and B. Roux Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands Nature 431 2004 830 834 (Pubitemid 39434076)
-
(2004)
Nature
, vol.431
, Issue.7010
, pp. 830-834
-
-
Noskov, S.Y.1
Berneche, S.2
Roux, B.3
-
27
-
-
33846625994
-
Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels
-
DOI 10.1085/jgp.200609633
-
S.Y. Noskov, and B. Roux Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels J. Gen. Physiol. 129 2007 135 143 (Pubitemid 46184871)
-
(2007)
Journal of General Physiology
, vol.129
, Issue.2
, pp. 135-143
-
-
Noskov, S.Yu.1
Roux, B.2
-
28
-
-
79551667691
-
Comparative study of the energetics of ion permeation in Kv1.2 and KcsA potassium channels
-
T. Baştuǧ, and S. Kuyucak Comparative study of the energetics of ion permeation in Kv1.2 and KcsA potassium channels Biophys. J. 100 2011 629 636
-
(2011)
Biophys. J.
, vol.100
, pp. 629-636
-
-
Baştuǧ, T.1
Kuyucak, S.2
-
29
-
-
65249142851
-
Ion binding properties and structure stability of the NaK channel
-
R. Shen, and W. Guo Ion binding properties and structure stability of the NaK channel Biochim. Biophys. Acta-Biomembr. 1788 2009 1024 1032
-
(2009)
Biochim. Biophys. Acta-Biomembr.
, vol.1788
, pp. 1024-1032
-
-
Shen, R.1
Guo, W.2
-
31
-
-
0035861457
-
A prokaryotic voltage-gated sodium channel
-
DOI 10.1126/science.1065635
-
D. Ren, B. Navarro, H. Xu, L. Yue, Q. Shi, and D.E. Clapham A prokaryotic voltage-gated sodium channel Science 294 2001 2372 2375 (Pubitemid 33140564)
-
(2001)
Science
, vol.294
, Issue.5550
, pp. 2372-2375
-
-
Ren, D.1
Navarro, B.2
Xu, H.3
Yue, L.4
Shi, Q.5
Clapham, D.E.6
-
32
-
-
80051495437
-
NaChBac: The long lost sodium channel ancestor
-
K. Charalambous, and B.A. Wallace NaChBac: the long lost sodium channel ancestor Biochemistry 50 2011 6742 6752
-
(2011)
Biochemistry
, vol.50
, pp. 6742-6752
-
-
Charalambous, K.1
Wallace, B.A.2
-
34
-
-
5144229327
-
Gating of the bacterial sodium channel, NaChBac: Voltage-dependent charge movement and gating currents
-
DOI 10.1085/jgp.200409139
-
A. Kuzmenkin, F. Bezanilla, and A.M. Correa Gating of the bacterial sodium channel, NaChBac: voltage-dependent charge movement and gating currents J. Gen. Physiol. 124 2004 349 356 (Pubitemid 39346639)
-
(2004)
Journal of General Physiology
, vol.124
, Issue.4
, pp. 349-356
-
-
Kuzmenkin, A.1
Bezanilla, F.2
Correa, A.M.3
-
35
-
-
0036899251
-
The cation selectivity filter of the bacterial sodium channel, NaChBac
-
DOI 10.1085/jgp.20028699
-
L. Yue, B. Navarro, D. Ren, A. Ramos, and D.E. Clapham The cation selectivity filter of the bacterial sodium channel, NaChBac J. Gen. Physiol. 120 2002 845 853 (Pubitemid 35435016)
-
(2002)
Journal of General Physiology
, vol.120
, Issue.6
, pp. 845-853
-
-
Yue, L.1
Navarro, B.2
Ren, D.3
Ramos, A.4
Clapham, D.E.5
-
36
-
-
79960621367
-
The crystal structure of a voltage-gated sodium channel
-
J. Payandeh, T. Scheuer, N. Zheng, and W.A. Catterall The crystal structure of a voltage-gated sodium channel Nature 475 2011 353 358
-
(2011)
Nature
, vol.475
, pp. 353-358
-
-
Payandeh, J.1
Scheuer, T.2
Zheng, N.3
Catterall, W.A.4
-
37
-
-
84856737491
-
Sodium ion binding sites and hydration in the lumen of a bacterial ion channel from molecular dynamics simulations
-
V. Carnevale, W. Treptow, and M.L. Klein Sodium ion binding sites and hydration in the lumen of a bacterial ion channel from molecular dynamics simulations J. Phys. Chem. Lett. 2 2011 2504 2508
-
(2011)
J. Phys. Chem. Lett.
, vol.2
, pp. 2504-2508
-
-
Carnevale, V.1
Treptow, W.2
Klein, M.L.3
-
39
-
-
0042415783
-
NAMD2: Greater scalability for parallel molecular dynamics
-
L. Kale, R. Skeel, M. Bhandarkar, R. Brunner, A. Gursoy, N. Krawetz, J. Phillips, A. Shinozaki, K. Varadarajan, and K. Schulten NAMD2: greater scalability for parallel molecular dynamics J. Comput. Phys. 151 1999 283 312
-
(1999)
J. Comput. Phys.
, vol.151
, pp. 283-312
-
-
Kale, L.1
Skeel, R.2
Bhandarkar, M.3
Brunner, R.4
Gursoy, A.5
Krawetz, N.6
Phillips, J.7
Shinozaki, A.8
Varadarajan, K.9
Schulten, K.10
-
40
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
A.D. MacKerell, D. Bashford, M. Bellott, R.L. Dunbrack, J.D. Evanseck, M.J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F.T.K. Lau, C. Mattos, S. Michnick, T. Ngo, D.T. Nguyen, B. Prodhom, W.E. Reiher, B. Roux, M. Schlenkrich, J.C. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, and M. Karplus All-atom empirical potential for molecular modeling and dynamics studies of proteins J. Phys. Chem. B 102 1998 3586 3616 (Pubitemid 128576688)
-
(1998)
Journal of Physical Chemistry B
, vol.102
, Issue.18
, pp. 3586-3616
-
-
MacKerell Jr., A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack Jr., R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-McCarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher III, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
41
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
W.L. Jorgensen, J. Chandrasekhar, J.D. Madura, R.W. Impey, and M.L. Klein Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 79 1983 926 935
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
42
-
-
0036195868
-
On the potential functions used in molecular dynamics simulations of ion channels [2]
-
B. Roux, and S. Bernèche On the potential functions used in molecular dynamics simulations of ion channels Biophys. J. 82 2002 1681 1684 (Pubitemid 34204785)
-
(2002)
Biophysical Journal
, vol.82
, Issue.3
, pp. 1681-1684
-
-
Roux, B.1
Berneche, S.2
-
43
-
-
33645961739
-
A smooth particle mesh Ewald method
-
U. Essmann, L. Perera, M.L. Berkowitz, T. Darden, H. Lee, and L.G. Pedersen A smooth particle mesh Ewald method J. Chem. Phys. 103 1995 8577 8593
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
44
-
-
36449007836
-
Constant pressure molecular dynamics simulation: The Langevin piston method
-
S.E. Feller, Y. Zhang, R.W. Pastor, and B.R. Brooks Constant pressure molecular dynamics simulation: the Langevin piston method J. Chem. Phys. 103 1995 4613 4621
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 4613-4621
-
-
Feller, S.E.1
Zhang, Y.2
Pastor, R.W.3
Brooks, B.R.4
-
45
-
-
0030404988
-
HOLE: A program for the analysis of the pore dimensions of ion channel structural models
-
DOI 10.1016/S0263-7855(97)00009-X, PII S026378559700009X
-
O.S. Smart, J.G. Neduvelil, X. Wang, B.A. Wallace, and M.S.P. Sansom HOLE: a program for the analysis of the pore dimensions of ion channel structural models J. Mol. Graph. 14 1996 354 360 (Pubitemid 27302826)
-
(1996)
Journal of Molecular Graphics
, vol.14
, Issue.6
, pp. 354-360
-
-
Smart, O.S.1
Neduvelil, J.G.2
Wang, X.3
Wallace, B.A.4
Sansom, M.S.P.5
-
47
-
-
33749350822
-
Nonequilibrium molecular dynamics calculation of the conductance of the KcsA potassium ion channel
-
H.W. de Haan, I.S. Tolokh, C.G. Gray, and S. Goldman Nonequilibrium molecular dynamics calculation of the conductance of the KcsA potassium ion channel Phys. Rev. E 74 2006 030905
-
(2006)
Phys. Rev. e
, vol.74
, pp. 030905
-
-
De Haan, H.W.1
Tolokh, I.S.2
Gray, C.G.3
Goldman, S.4
-
48
-
-
33751229926
-
+ conduction in the selectivity filter of potassium channels is monitored by the charge distribution along their sequence
-
+ conduction in the selectivity filter of potassium channels is monitored by the charge distribution along their sequence Biophys. J. 91 2006 L81 L83
-
(2006)
Biophys. J.
, vol.91
-
-
Treptow, W.1
Tarek, M.2
-
49
-
-
84865268187
-
Optimization of the molecular dynamics method for simulations of DNA and ion transport through biological nanopores
-
D.B. Wells, S. Bhattacharya, R. Carr, C. Maffeo, A. Ho, J. Comer, and A. Aksimentiev Optimization of the molecular dynamics method for simulations of DNA and ion transport through biological nanopores M.E. Gracheva, Nanopore-Based Technology: Single Molecule Characterization and DNA Sequencing 2011 Humana Press Totowa, NJ
-
(2011)
Nanopore-Based Technology: Single Molecule Characterization and DNA Sequencing
-
-
Wells, D.B.1
Bhattacharya, S.2
Carr, R.3
Maffeo, C.4
Ho, A.5
Comer, J.6
Aksimentiev, A.7
-
50
-
-
0342929614
-
Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling
-
G.M. Torrie, and J.P. Valleau Nonphysical sampling distributions in Monte Carlo free-energy estimation: umbrella sampling J. Comput. Phys. 23 1977 187 199
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 187-199
-
-
Torrie, G.M.1
Valleau, J.P.2
-
51
-
-
84986519238
-
The weighted histogram analysis method for free-energy calculations on biomolecules. I. the method
-
S. Kumar, J.M. Rosenberg, D. Bouzida, R.H. Swendsen, and P.A. Kollman The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method J. Comput. Chem. 13 1992 1011 1021
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Rosenberg, J.M.2
Bouzida, D.3
Swendsen, R.H.4
Kollman, P.A.5
-
52
-
-
0142185496
-
+ selectivity filter: Charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates
-
DOI 10.1016/j.jmb.2003.09.022
-
+ selectivity filter: charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates J. Mol. Biol. 333 2003 965 975 (Pubitemid 37324499)
-
(2003)
Journal of Molecular Biology
, vol.333
, Issue.5
, pp. 965-975
-
-
Zhou, Y.1
MacKinnon, R.2
-
54
-
-
0042213113
-
+ channel in a bilayer membrane
-
+ channel in a bilayer membrane Biophys. J. 78 2000 2900 2917 (Pubitemid 30396923)
-
(2000)
Biophysical Journal
, vol.78
, Issue.6
, pp. 2900-2917
-
-
Berneche, S.1
Roux, B.2
-
55
-
-
35348997382
-
The predominant role of coordination number in potassium channel selectivity
-
DOI 10.1529/biophysj.107.108167
-
M. Thomas, D. Jayatilaka, and B. Corry The predominant role of coordination number in potassium channel selectivity Biophys. J. 93 2007 2635 2643 (Pubitemid 47607801)
-
(2007)
Biophysical Journal
, vol.93
, Issue.8
, pp. 2635-2643
-
-
Thomas, M.1
Jayatilaka, D.2
Corry, B.3
-
56
-
-
79956067240
-
Perspectives on: Ion selectivity
-
O.S. Andersen Perspectives on: ion selectivity J. Gen. Physiol. 137 2011 393 395
-
(2011)
J. Gen. Physiol.
, vol.137
, pp. 393-395
-
-
Andersen, O.S.1
-
57
-
-
84863393269
-
Mechanism of ion permeation and selectivity in a voltage gated sodium channel
-
B. Corry, and M. Thomas Mechanism of ion permeation and selectivity in a voltage gated sodium channel J. Am. Chem. Soc. 134 2012 1840 1846
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 1840-1846
-
-
Corry, B.1
Thomas, M.2
-
58
-
-
0033011168
-
Calcium channel permeation: A field in flux
-
E.W. McCleskey Calcium channel permeation: a field in flux J. Gen. Physiol. 113 1999 765 772
-
(1999)
J. Gen. Physiol.
, vol.113
, pp. 765-772
-
-
McCleskey, E.W.1
|