Draft genome sequence of Rhodococcus sp. Strain P14, a biodegrader of high-molecular-weight polycyclic aromatic hydrocarbons

Journal of Bacteriology

Volumn 194, Issue 13, 2012, Pages 3546-

  Zhang, Ying ^a   Qin, Fujun ^a   Qiao, Jing ^a   Li, Gangmin ^a   Shen, Chenghui ^a   Huang, Tongwang ^a   Hu, Zhong ^a  

^a SHANTOU UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MINERAL OIL; PETROLEUM; POLYCYCLIC AROMATIC HYDROCARBON; XENOBIOTIC AGENT;

BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIODEGRADATION; BIOTECHNOLOGY; GENE SEQUENCE; MOLECULAR WEIGHT; NONHUMAN; NOTE; PRIORITY JOURNAL; RHODOCOCCUS; SEDIMENT;

BIODEGRADATION, ENVIRONMENTAL; GENOME, BACTERIAL; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; PETROLEUM; POLYCYCLIC HYDROCARBONS, AROMATIC; RHODOCOCCUS; SEQUENCE ANALYSIS, DNA; SOIL POLLUTANTS;

RHODOCOCCUS; RHODOCOCCUS SP.;

EID: 84864013921     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00555-12     Document Type: Note

References (11)

1. Kanaly RA, Harayama S. 2000. Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria. J. Bacteriol. 182:2059- 2067.
2. Kanehisa M, et al. 2008. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36:D480-D484.
3. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of rRNA genes. Nucleic Acids Res. 35:3100 -3108.
4. Larkin MJ, Kulakov LA, Allen CCR. 2005. Biodegradation and Rhodococcus- masters of catabolic versatility. Curr. Opin. Biotechnol. 16:282- 290.
5. Li R, Zhu H, Ruan J. 2010. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20:265-272.
6. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of tRNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
7. Martínková L, Uhnáková B, Pátek M, Nešvera J, Křen V. 2009. Biodegradation potential of the genus Rhodococcus. Environ. Int. 35:162-177.
8. McLeod MP, et al. 2006. The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse. Proc. Natl. Acad. Sci. U. S. A. 103:15582-15587.
9. Saito A, Iwabuchi T, Harayama S. 2000. A novel phenanthrene dioxygenase from Nocardioides sp. strain KP7: expression in Escherichia coli. J. Bacteriol. 182:2134 -2141.
10. Song X, et al. 2011. Isolation, characterization of Rhodococcus sp. P14 capable of degrading high-molecular-weight polycyclic aromatic hydrocarbons and aliphatic hydrocarbons. Mar. Pollut. Bull. 62:2122-2128.
11. Yang X, et al. 2011. Genome sequence of Rhodococcus sp. strain R04, a polychlorinated-biphenyl biodegrader. J. Bacteriol. 193:5032-5033.