Detection and diversity of pathogenic Vibrio from Fiji

Environmental Microbiology Reports

Volumn 4, Issue 4, 2012, Pages 403-411

  Singh, Reema ^a   Narayan, Vinay ^b   Mclenachan, Patricia ^c   Winkworth, Richard C ^a,c   Mitra, Suparna ^d   Lockhart, Peter J ^c,e   Berry, Lorraine ^c   Hatha, Abdulla M ^f   Aalbersberg, William ^b   Rao, Dhana ^a,g  

^a School of Biological and Chemical Sciences   (Fiji)

^b UNIVERSITY OF THE SOUTH PACIFIC   (Fiji)

^c MASSEY UNIVERSITY   (New Zealand)

^d UNIVERSITY OF LIVERPOOL   (United Kingdom)

^e Institute of Fundamental Sciences   (New Zealand)

^f Department of Physics   (India)

^g MARSHALL UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); VIBRIO;

EID: 84864009491     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/j.1758-2229.2012.00344.x     Document Type: Article

References (51)

1. Allen, E.E., and Banfield, J.F. (2005) Community genomics in microbial ecology and evolution. Nat Rev Microbiol 4: 489-498.
2. Alsina, M., and Blanch, A.R. (1994) A set of keys for biochemical identification of environmental Vibrio species. J Appl Bacteriol 76: 79-85.
3. Blake, P.A. (1994) Historical perspectives on pandemic cholera. In Vibrio cholerae and Cholera: Molecular to Global Perspectives. Wachsmuth, I.K., Blake, P.A., and Olsvik, Ø. (eds). Washington, USA: ASM Press, pp. 293-295.
4. Caburlotto, G., Gennari, M., Ghidini, V., Tafi, M., and Lleo, M.M. (2009) Presence of T3SS2 and other virulence-related genes in tdh-negative Vibrio parahaemolyticus environmental strains isolated from marine samples in the area of the Venetian Lagoon, Italy. FEMS Microbiol Ecol 70: 506-514.
5. Caporaso, J.G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello, E.K., etal. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7: 335-336.
6. Chan, K.Y., Woo, M.L., Lam, L.Y., and French, G.L. (1989) Vibrio parahaemolyticus and other halophilic Vibrios associated with seafood in Hong Kong. J Appl Bacteriol 66: 57-64.
7. Chiou, C.S., Hsu, S.Y., Chiu, S.I., Wang, T.K., and Chao, C.S. (2000) Vibrio parahaemolyticus serovar 03:K6 as a cause of unusually high incidence of food-borne disease outbreaks in Taiwan from 1996 to 1999. J Clin Microbiol 38: 4621-4625.
8. Daniel, R. (2005) The metagenomics of soil. Nat Rev Microbiol 4: 470-478.
9. Daniels, N.A., MacKinnon, L., Bishop, R., Altekruse, S., Ray, B., Hammond, R.M., etal. (2000) Vibrio parahaemolyticus infections in the United States, 1973-98. J Infect Dis 181: 1661-1666.
10. Delong, E.F. (2005) Microbial community genomics in the ocean. Nat Rev Microbiol 4: 459-469.
11. Dorsch, M., Lane, D., and Stackebrandt, E. (1992) Towards a phylogeny of the genus Vibrio based on 16S ribosomal-RNA sequences. Int J Syst Bacteriol 42: 58-63.
12. El hadi, N., Radu, S., Chen, C.H., and Nishibuchi, M. (2004) Prevalence of potentially pathogenic Vibrio species in the seafood marketed in Malaysia. J Food Prot 67: 1469-1475.
13. Farmer, J.J., 3rd (1992) The family Vibrionaceae. In The Prokaryotes, a Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, 2nd edn. Balows, A., Trüper, H.G., Dworkin, M., Harder, W., and Schleifer, K.H. (eds). Berlin, Germany: Springer-Verlag, pp. 2938-2951.
14. Farmer, J.J., 3rd, Janda, J.M., and Birkhead, K. (2003) Vibrio. In Manual of Clinical Microbiology. Murray, P.R., Baron, E.J., Pfaller, M.A., Jorgensen, J.H., and Yolken, R.H. (ed.). Washington, USA: ASM Press, pp. 706-718.
15. Faruque, S.M., Albert, M.J., and Mekalanos, J.J. (1998) Epidemiology, genetics, and ecology of toxigenic Vibrio cholerae. Microbiol Mol Biol Rev 62: 1301-1314.
16. Fiji Centre for Communicable Disease Control (2009a) Fiji Communicable Disease Bulletin, Issue 1. Suva: Fiji Ministry of Health.
17. Fiji Centre for Communicable Disease Control (2009b) Fiji Communicable Disease Bulletin, Issue 6. Suva: Fiji Ministry of Health.
18. Fiji Centre for Communicable Disease Control (2010) Fiji Communicable Disease Bulletin, Issue 1. Suva: Fiji Ministry of Health.
19. Gaffga, N.H., Tauxe, R.V., and Mintz, E.D. (2007) Cholera: a new homeland in Africa. Am J Trop Med Hyg 77: 705-713.
20. Gonzalez-Escalona, N., Martinez-Urtaza, J., Romero, J., Espejo, R.T., Jaykus, L.A., and DePaola, A. (2008) Determination of molecular phylogenetics of Vibrio parahaemolyticus strains by multilocus sequence typing. J Bacteriol 190: 2831-2840.
21. Gopal, S., Otta, S.K., Kumar, S., Karunasagar, I., Nishibuchi, M., and Karunasagar, I. (2005) The occurrence of Vibrio species in tropical shrimp culture environments; implications for food safety. Int J Food Microbiol 102: 151-159.
22. Green Tringe, S., von Mering, C., Kobayashi, A., Salamov, A.A., Chen, K., Chang, H.W., etal. (2005) Comparative metagenomics of microbial communities. Science 308: 554-557.
23. Hazen, T.J., Pan, L., Gu, J.-D., and Sobecky, P.A. (2010) The contribution of mobile genetic elements to the evolution and ecology of Vibrios. FEMS Microbiol Ecol 74: 485-499.
24. Hugenholtz, P., and Tyson, G.W. (2008) Metagenomics. Nature 455: 481-483.
25. Huson, D.H., Auch, A.F., Qi, J., and Schuster, S.C. (2007) MEGAN analysis of metagenomic data. Genome Res 17: 377-386.
26. Huson, D.H., Richter, D., Mitra, S., Auch, A., and Schuster, S.C. (2009) Methods for comparative metagenomics. BMC Bioinformatics 10: S12.
27. Huson, D.H., Mitra, S., Weber, N., Ruscheweyh, H., and Schuster, S.C. (2011) Integrative analysis of environmental sequences using MEGAN4. Genome Research 21: 1552-1560.
28. Jiang, S.C., Louis, V., Choopun, N., Sharma, A., Huq, A., and Colwell, R.R. (2000) Genetic diversity of Vibrio cholerae in Chesapeake Bay determined by amplified fragment length polymorphism fingerprinting. Appl Environ Microbiol 66: 140-147.
29. Kagiko, M.M., Damiano, W.A., and Kayihura, M.M. (2001) Characterization of Vibrio parahaemolyticus isolated from fish in Kenya. East Afr Med J 78: 124-127.
30. Lazarevic, V., Whiteson, K., Huse, S., Hernandez, D., Farinelli, L., Osterås, M., etal. (2009) Metagenomic study of the oral microbiota by Illumina high-throughput sequencing. J Microbiol Methods 79: 266-271.
31. McLaughlin, J.B., DePaola, A., Bopp, C.A., Martinek, K.A., Napolilli, N.P., Allison, C.G., etal. (2005) Outbreak of Vibrio parahaemolyticus gastroenteritis associated with Alaskan oysters. N Engl J Med 353: 1463-1470.
32. Mitra, S., Schubach, M., and Huson, D.H. (2010) Short clones or long clones? A simulation study on the use of paired reads in metagenomics. BMC Bioinformatics 11: S12.
33. Morgan, J.L., Darling, A.E., and Eisen, J.A. (2010) Metagenomic sequencing of an in vitro-simulated microbial community. PLoS ONE 5: e10209.
34. Myhr, E., Larsen, J.L., Lillehaug, A., Gudding, R., Heum, M., and Håstein, T. (1991) Characterization of Vibrio anguillarium and closely related species isolated from farmed fish in Norway. Appl Environ Microbiol 57: 2750-2757.
35. Noguerola, I., and Blanch, A.R. (2008) Identification of Vibrio spp. with a set of dichotomous keys. J Appl Bacteriol 105: 175-185.
36. Oliver, J.D. (2005) Wound infections caused by Vibrio vulnificus and other marine bacteria. Epidemiol Infect 133: 383-391.
37. Oliver, J.D., and Kaper, J. (2005) Vibrio vulnificus. In Oceans and Health: Pathogens in the Marine Environment, 2nd edn. BelkenS.S., and Colwell, R.R. (eds). Berlin, Germany: Springer-Verlag, pp. 253-276.
38. Pascual, J., Macián, M.C., Arahal, D.R., Garay, E., and Pujalte, M.J. (2010) Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes. Int J Syst Evol Microbiol 60: 154-165.
39. Penland, R.L., Boniuk, M., and Wilhelmus, K.R. (2000) Vibrio ocular infections on the U.S. Gulf Coast. Cornea 19: 26-29.
40. Pruzzo, C., Huq, A., Colwell, R.R., and Donelli, G. (2005) Pathogenic Vibrio species in the marine and estuarine environment. In Oceans and Health: Pathogens in the Marine Environment, 2nd edn. Belken, S.S., and Colwell, R.R. (eds). Berlin, Germany: Springer-Verlag, pp. 217-252.
41. Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K.S., Manichanh, C., etal. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
42. Reeves, P.R., and Lan, R. (1998) Cholera in the 1990s. Br Med Bull 54: 611-623.
43. Rodriguez-Brito, B., Li, L., Wegley, L., Furlan, M., Angly, F., Breitbart, M., etal. (2010) Viral and microbial community dynamics in four aquatic environments. ISME J 4: 739-751.
44. Sawabe, T., Kita-Tsukamoto, K., and Thompson, F.L. (2007) Inferring the evolutionary history of vibrios by means of multilocus sequence analysis. J Bacteriol 189: 7932-7936.
45. Thompson, F.L., Iida, T., and Swings, J. (2004) Biodiversity of vibrios. Microbiol Mol Biol Rev 68: 403-431.
46. Thompson, F.L., Gevers, D., Thompson, C.C., Dawyndt, D., Naser, S., Hoste, B., etal. (2005) Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Appl Environ Microbiol 71: 5107-5115.
47. Thompson, F.L., Gomez-Gil, B., Vasconcelos, A.T.B., and Swabe, T. (2007a) Multilocus sequence analysis reveals that Vibrio harveyi and V. campbelli are distinct species. Appl Environ Microbiol 73: 4279-4285.
48. Thompson, F.L., Cleenwerck, I., Swings, J., Matsuyama, J., and Iida, T. (2007b) Genomic diversity and homologous recombination in Vibrio parahaemolyticus as revealed by amplified fragment length polymorphism (AFLP) and multilocus sequence analysis (MLSA). Microbes Environ 22: 373-379.
49. Wachsmuth, I.K., Olsvik, Ø., Evins, G.M., and Popovic, T. (1994) Molecular epidemiology of cholera. In Vibrio cholerae and Cholera: Molecular to Global Perspectives. Wachsmuth, I.K., Blake, P.A., and Olsvik, Ø. (eds). Washington, USA: ASM Press, pp. 357-370.
50. Wang, R., Huang, J., Zhang, W., Lin, G., Lian, J., Jiang, L., etal. (2011) Detection and identification of Vibrio parahaemolyticus by multiplex PCR and DNA-DNA hybridization on a microarray. J Genet Genomics 38: 129-135.
51. Wong, H.C., Chen, M.C., Liu, S.H., and Liu, D.P. (1999) Incidence of highly genetically diversified Vibrio parahaemolyticus in seafood imported from Asian countries. Int J Food Microbiol 52: 181-188.