메뉴 건너뛰기




Volumn 28, Issue 13, 2012, Pages 1692-1697

Speeding up tandem mass spectral identification using indexes

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE; PROTEIN;

EID: 84863997027     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts244     Document Type: Article
Times cited : (11)

References (17)
  • 1
    • 0002451984 scopus 로고    scopus 로고
    • SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database
    • Bafna, V. and Edwards, N. (2001) SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database. Bioinformatics, 17(Suppl. 1), S13-S21.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Bafna, V.1    Edwards, N.2
  • 2
    • 55949128226 scopus 로고    scopus 로고
    • Improved sequence tag generation method for peptide identification in tandem mass spectrometry
    • Cao, X. and Nesvizhskii, A.I. (2008) Improved sequence tag generation method for peptide identification in tandem mass spectrometry. J. Proteome Res., 7, 4422-4434.
    • (2008) J. Proteome Res. , vol.7 , pp. 4422-4434
    • Cao, X.1    Nesvizhskii, A.I.2
  • 3
    • 0033565832 scopus 로고    scopus 로고
    • Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing ms or ms/ms and database searching
    • Clauser, K.R. et al. (1999) Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing ms or ms/ms and database searching. Anal. Chem., 71, 2871-2882.
    • (1999) Anal. Chem. , vol.71 , pp. 2871-2882
    • Clauser, K.R.1
  • 5
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J.K. et al. (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom., 5, 976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1
  • 6
    • 23944455372 scopus 로고    scopus 로고
    • Peptide sequence tags for fast database search in massspectrometry
    • Frank, A. et al. (2005) Peptide sequence tags for fast database search in massspectrometry. J. Proteome Res., 4, 1287-1295.
    • (2005) J. Proteome Res. , vol.4 , pp. 1287-1295
    • Frank, A.1
  • 7
    • 79955831978 scopus 로고    scopus 로고
    • Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos
    • Frese, C.K. et al. (2011) Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos. J. Proteome Res., 10, 2377-2388.
    • (2011) J. Proteome Res. , vol.10 , pp. 2377-2388
    • Frese, C.K.1
  • 8
    • 7044246160 scopus 로고    scopus 로고
    • Open mass spectrometry search algorithm
    • Geer, L.Y. et al. (2004) Open mass spectrometry search algorithm. J. Proteome Res., 3, 958-964.
    • (2004) J. Proteome Res. , vol.3 , pp. 958-964
    • Geer, L.Y.1
  • 9
    • 79958012078 scopus 로고    scopus 로고
    • Gapped spectral dictionaries and their applications for database searches of tandem mass spectra
    • M110.002220
    • Jeong, K. et al. (2011) Gapped spectral dictionaries and their applications for database searches of tandem mass spectra. Mol. Cell. Proteomics, 10, M110.002220.
    • (2011) Mol. Cell. Proteomics , vol.10
    • Jeong, K.1
  • 10
    • 50149117169 scopus 로고    scopus 로고
    • Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases
    • Kim, S. et al. (2008) Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases. J. Proteome Res., 7, 3354-3363.
    • (2008) J. Proteome Res. , vol.7 , pp. 3354-3363
    • Kim, S.1
  • 11
    • 78650088750 scopus 로고    scopus 로고
    • Deconvolution and database search of complex tandem mass spectra of intact proteins: a combinatorial approach
    • Liu, X. et al. (2010) Deconvolution and database search of complex tandem mass spectra of intact proteins: a combinatorial approach. Mol. Cell. Proteomics, 9, 2772-2782.
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 2772-2782
    • Liu, X.1
  • 12
    • 84862330176 scopus 로고    scopus 로고
    • Protein identification using top-down spectra
    • M111.008524
    • Liu, X. et al. (2011) Protein identification using top-down spectra. Mol. Cell. Proteomics, M111.008524.
    • (2011) Mol. Cell. Proteomics
    • Liu, X.1
  • 13
    • 0028575316 scopus 로고
    • Error-tolerant identification of peptides in sequence databases by peptide sequence tags
    • Mann, M. and Wilm, M. (1994) Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal. Chem., 66, 4390-4399.
    • (1994) Anal. Chem. , vol.66 , pp. 4390-4399
    • Mann, M.1    Wilm, M.2
  • 14
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D.N. et al. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis, 20, 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1
  • 15
    • 80052485658 scopus 로고    scopus 로고
    • Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods
    • Shen, Y. et al. (2011) Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods. J. Proteome Res., 10, 3929-3943.
    • (2011) J. Proteome Res. , vol.10 , pp. 3929-3943
    • Shen, Y.1
  • 16
    • 27544511899 scopus 로고    scopus 로고
    • InsPecT: identification of posttranslationally modified peptides from tandem mass spectra
    • Tanner, S. et al. (2005) InsPecT: identification of posttranslationally modified peptides from tandem mass spectra. Anal. Chem., 77, 4626-4639.
    • (2005) Anal. Chem. , vol.77 , pp. 4626-4639
    • Tanner, S.1
  • 17
    • 78649920362 scopus 로고    scopus 로고
    • Speeding up tandem mass spectrometry-based database searching by longest common prefix
    • Zhou, C. et al. (2010) Speeding up tandem mass spectrometry-based database searching by longest common prefix. BMC Bioinformatics, 11, 577.
    • (2010) BMC Bioinformatics , vol.11 , pp. 577
    • Zhou, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.