Occurrence and genetic diversity of winona-like plum pox virus Isolates in Russia

Plant Disease

Volumn 96, Issue 8, 2012, Pages 1135-1142

  Sheveleva, Anna ^a   Ivanov, Peter ^a   Prihodko, Yuri ^b   James, Delano ^c   Chirkov, Sergei ^a  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

^b All Russian Plant Quarantine Center   (Russian Federation)

^c Canadian Food Inspection Agency   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

PLUM POX VIRUS; PRUNUS DOMESTICA; PRUNUS NIGRA; PRUNUS SPINOSA; PRUNUS TOMENTOSA;

EID: 84863938722     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS-12-11-1045-RE     Document Type: Article

References (41)

1. Cambra, M., Asensio, M., Gorris, M. T., Perez, E., Camarasa, E., Garcia, J. A., Moya, J. J., Lopez-Abella, D., Vela, C., and Sanz, A. 1994. Detection of plum pox potyvirus using monoclonal antibodies to structural and nonstructural proteins. EPPO Bull. 24:569-577.
2. Cambra, M., Boscia, D., Myrta, A., and Llacer, G. 2006. Plum pox virus and estimated cost associated with Sharka disease. EPPO Bull. 36:202-204.
3. Cambra, M., Boscia, D., Myrta, A., Palkovich, L., Navratil, M., Barba, M., Gorris, M. T., and Capote, N. 2006. Detection and characterization of Plum pox virus: serological methods. EPPO Bull. 36:254-261.
4. Cambra, M., Capote, N., Olmos, A., Bertolini, E., Gorris, M. T., Africander, N. L., Levy, L., Lenardon, S. L., Clover, G., and Wright, D. 2008. Proposal for a new international protocol for detection and identification of Plum pox virus: validation of the techniques. Acta Hortic. 781:181-191.
5. Candresse, T., Rafia F., Cambra, M., Asensio, M., Navratil, M., Garcia, J. A., Boscia, D., Barba, M., and Dunez, J. 1998. Characterization of Plum pox virus coat protein epitopes using fusion proteins expressed in E. coli. Acta Hortic. 472:461-467.
6. Candresse, T., Saenz, P., Garcia, J. A., Boscia, D., Navratil, M., Gorris, M. T., and Cambra, M. 2011. Analysis of the epitope structure of Plum pox virus coat protein. Phytopathology 101:611-619.
7. Croft, H., Malinowski, T., Krizbai, L., Mikec, I., Kajic, V., Reed, C., Varga, A., and James, D. 2008. Use of Luminex xMAP-derived Bio-Plex bead-based suspension array for specific detection of PPV W and characterization of epitopes on the coat protein of the virus. J. Virol. Methods 153:203-213.
8. EPPO. 2004. Diagnostic protocol for regulated pests. Plum pox virus. EPPO Bull. 34:247-256.
9. Fernandez-Fernandez, M. R., Martinez-Torrecuadrada, J. L., Roncal, F., Dominguez, E., and Garcia, J. A. 2002. Identification of immunogenic hot spots within plum pox potyvirus capsid protein for efficient antigen presentation. J. Virol. 76:12646-12653.
10. Garcia, J. A., and Cambra, M. 2007. Plum pox virus and sharka disease. Plant Viruses 1:69-79.
11. Gasteiger, E., Hoogland, C., Gattiker, A., Duvaud, S., Wilkins, M. R., Appel, R. D., and Bairoch, A. 2005. Protein identification and analysis tools on the ExPASy Server. In: The Proteomics Handbook. J. M. Walker, ed. Humana Press, Totowa, NJ.
12. Glasa, M., Malinowski, T., Predajna, L., Pupola, N., Dekena, D., Michalczuk, L., and Candresse, T. 2011. Sequence variability, recombination analysis and specific detection of the W strain of Plum pox virus. Phytopathology 101:980-985.
13. Guindon, S., and Gascuel, O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
14. James, D., and Varga, A. 2004. Preliminary molecular characterization of Plum pox virus isolate W3174: Evidence of a new strain. Acta Hortic. 657:177-182.
15. James, D., and Varga, A. 2005. Nucleotide sequence analysis of Plum pox virus isolate W3174: evidence of a new strain. Virus Res. 110:143-150.
16. James, D., Varga, A., Thompson, D., and Hayes, S. 2003. Detection of a new and unusual isolate of Plum pox virus in plum (Prunus domestica). Plant Dis. 87:1119-1124.
17. Jordan, R., and Hammond, J. 1991. Comparison and differentiation of potyvirus isolates and identification of strain-, virus-, subgroup-specific and potyvirus group-common epitopes using monoclonal antibodies. J. Gen. Virol. 72:25-36.
18. Kim, Y.-C., Udeshi, N. D., Balsbaugh, J. L., Shabanowitz, J., Hunt, D. F., and Olszewski, N. E. 2011. O-GlcNAcylation of the Plum pox virus capsid protein catalyzed by SECRET AGENT: characterization of O-GlcNAc sites by electron transfer dissociation mass spectrometry. Amino Acids 40:869-876.
19. Kollerova, E., Glasa, M., and Subr, Z. W. 2008. Western blotting analysis of the Plum pox virus capsid protein. J. Plant Pathol. 90 (Suppl. 1):S1.19-S1.22.
20. Laemmli, U. K. 1970. Cleavage of structural proteins during assembly of the head of bacteriophage T4. Nature 227:680-685.
21. Lain, S., Riechmann, J. L., and Mendez, E. 1988. Nucleotide sequence of the 3ttterminal region of plum pox potyvirus RNA. Virus Res. 10:325-342.
22. Levy, L., and Hadidi, A. A. 1994. Simple and rapid method for processing tissue infected with Plum pox potyvirus for use with specific 3ttnon-coding region RT-PCR assays. EPPO Bull. 24:595-604.
23. Lopez-Moya, J. J., Canto, T., Lopez-Abella, D., and Diaz-Ruiz, J. R. 1994. Differentiation of Mediterranean plum pox virus isolates by coat protein analysis. Plant Pathol. 43:161-171.
24. Martinez, H. M. 1983. An efficient method for finding repeats in molecular sequences. Nucleic Acids Res. 11:4629-4634.
25. Mavrodieva, V., Mock, R., and Levy, L. 2006. Molecular characterization of PPV isolates from plum germplasm illegally imported from Ukraine. Page 112 in: Book of Abstracts, 20th Int. Symp. Virus and Virus-like Diseases of Temperate Fruit Crops. Antalya, Turkey.
26. Mavrodieva, V., Negi, S., James, D., and Levy, L. 2010. Sequence variability among isolates of strain W of Plum pox virus (PPV) influences identification. Page 14 in: Book of Abstracts, Int. Symp. Plum pox virus. Sofia, Bulgaria.
27. Nemchinov, L., Crescenzi, A., Hadidi, A., Piazzolla, P., and Verderevskaya, T. 1998. Present status of the new cherry subgroup of plum pox virus (PPVC). Pages 629-638 in: Plant Virus Disease Control. A. Hadidi, R. K. Khetarpal, and H. Kogazenava, eds. American Phytopathological Society, St. Paul, MN.
28. Olmos, A., Cambra, M., Dasi, M. A., Candresse, T., Esteban, O., Gorris, M. T., and Asenio, M. 1997. Simultaneous detection and typing of plum pox potyvirus (PPV) isolates by hemi-nested PCR and PCR-ELISA. J. Virol. Methods 68:127-137.
29. Olmos, A., Capote, N., and Candresse, T. 2006. Detection and characterization of Plum pox virus: molecular methods. EPPO Bull. 36:262-266.
30. Salomone, A., Mongelli, M., Roggero, P., and Boscia, D. 2004. Reliability of detection of Citrus tristeza virus by an immunochromatigraphic lateral flow assay in comparison with ELISA. J. Plant Pathol. 86:43-48.
31. Serce, C. U., Candresse, T., Svanella-Dumas, L., Krizbai, L., Gazela, M., and Caglayan, K. 2009. Further characterization of a new recombinant group of Plum pox virus isolates, PPV-T, found in orchards in the Ankara province of Turkey. Virus Res. 142:121-126.
32. Sheveleva, A., Nemova, E., and Chirkov, S. 2011. Detection of a new Winona-like Plum pox virus isolate in naturally infected Canadian plum (Prunus nigra) in Russia. Acta Hortic. 899:49-55.
33. Shukla, D. D., Tribbick, G., Mason, T. J., Hewish, D. R., Geysen, H. M., and Ward, C. W. 1989. Localization of virus-specific and group-specific epitopes of plant potyviruses by systematic immunochemical analysis of overlapping peptide fragments. Proc. Natl. Acad. Sci. USA 86:8192-8196.
34. Subr, Z. W., and Glasa, M. 2008. Plum pox virus variability detected by the advanced analytical methods. Acta Virol. 52:75-90.
35. Subr, Z. W., Kamencayova, M., Novakova, S., Nagyova, A., Nosek, J., and Glasa M. 2010. A single amino acid mutation alters the capsid protein electrophoretic double-band phenotype of the Plum pox virus strain PPVRec. Arch. Virol. 155:1151-1155.
36. Subr, Z. W., Pittnerova, S., and Glasa, M. 2004. A simplified RT-PCR-based detection of recombinant Plum pox virus isolates. Acta Virol. 48:173-176.
37. Tamura, K., Dudley, J., Nei, M., and Kumar, S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
38. Tyulkina, L. G., Karger, E. M., Sheveleva, A. A., and Atabekov, J. G. 2010. Binding of monoclonal antibodies to the movement protein (MP) of Tobacco mosaic virus: Influence of subcellular MP localization and phosphorylation. J. Gen. Virol. 91:1621-1628.
39. Varga, A., and James, D. 2005. Detection and differentiation of Plum pox virus using real-time multiplex PCR with SYBR Green and melting curve analysis: a rapid method for strain typing. J. Virol. Methods 123:213-220.
40. Werner, W. E., Demorest, D. M., and Wiktorowicz, J. E. 1993. Automated Ferguson analysis of glycoprotaeins by capillary electrophoresis using a replaceable sieving matrix. Electrophoresis 14:759-763.
41. Wetzel, T., Candresse, T., Macquaire, G., Ravelonandro, M., and Dunez, J. 1992. A highly sensitive immunocapture polymerase chain reaction method for Plum pox virus detection. J. Virol. Methods 39:27-37.