Mode of coniferous wood decay by the white rot fungus Phanerochaete carnosa as elucidated by FTIR and ToF-SIMS

Applied Microbiology and Biotechnology

Volumn 94, Issue 5, 2012, Pages 1303-1311

  Mahajan, Sonam ^a   Jeremic, Dragica ^a   Goacher, Robyn E ^a   Master, Emma R ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

Basidiomycota; Coniferous softwood; Fourier transform infrared spectroscopy; Principal component analysis; Selective degradation; Time of flight secondary ion mass spectrometry; White rot decay

Indexed keywords

BALSAM FIR; BASIDIOMYCOTA; CELL WALLS; CERIPORIOPSIS SUBVERMISPORA; FTIR; INDUSTRIAL POTENTIALS; LIGNIN DEGRADATION; LODGEPOLE PINE; SELECTIVE DEGRADATION; SOFTWOOD LIGNIN; TIME OF FLIGHT SECONDARY ION MASS SPECTROMETRY; TOF SIMS; WHITE ROT; WHITE ROT FUNGI;

DEGRADATION; FOURIER TRANSFORM INFRARED SPECTROSCOPY; HARDWOODS; LIGNIN; PRINCIPAL COMPONENT ANALYSIS; SOFTWOODS;

SECONDARY ION MASS SPECTROMETRY;

LIGNIN;

BIODEGRADATION; BIOTECHNOLOGY; CONIFEROUS TREE; DECOMPOSITION; FTIR SPECTROSCOPY; FUNGUS; LIGNIN; MASS SPECTROMETRY; MEMBRANE; PRINCIPAL COMPONENT ANALYSIS; RABIES; WOOD;

ARTICLE; CELL WALL; CONTROLLED STUDY; FUNGUS GROWTH; INFRARED SPECTROSCOPY; LAMELLAR BODY; NONHUMAN; PHANEROCHAETE; PHANEROCHAETE CARNOSA; PINE; PROTEIN DEGRADATION; TIME OF FLIGHT MASS SPECTROMETRY; WOOD DECAY FUNGUS;

ABIES; LIGNIN; PHANEROCHAETE; PINUS; SPECTROMETRY, MASS, SECONDARY ION; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; WOOD;

ABIES AMABILIS; FOURIER ANALYSIS; INFRARED SPECTROSCOPY; LIGNINS; MASS SPECTROMETERS; PINUS CONTORTA; SOFTWOODS; WHITE ROT FUNGI; WOOD DECAY;

ABIES BALSAMEA; BASIDIOMYCOTA; CERIPORIOPSIS SUBVERMISPORA; FUNGI; PHANEROCHAETE CARNOSA; PINUS CONTORTA;

EID: 84863851064     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3830-1     Document Type: Article

References (45)

1. ASTM D1105-96 (2007) Standard test method for preparation of extractive-free wood. American Society for Testing and Materials, West Conshoshocken
2. Blanchette RA (1984) Screening wood decayed by white rot fungi for preferential lignin degradation. Appl Environ Microbiol 48 (3):647-653 Blanchette RA (1991) Delignification by wood-decay fungi. Ann Rev Phytopath 29:381-398
3. Blanchette RA, Otjen L, Effland MJ, Eslyn WE (1985) Changes in structural and chemical components of wood delignified by fungi. Wood Sci Technol 19:35-46
4. Blanchette RA, Krueger EW, Haight JE, Akhtar M, Akin DE (1997) Cell wall alterations in loblolly pine wood decayed by the whiterot fungus, Ceriporiopsis subvermispora. J Biotechnol 53(2-3):203-213 (Pubitemid 27286438)
5. Bodas C, Khan-Malek C (2006) Formation of more stable hydrophilic surfaces of PDMS by plasma and chemical treatments. Microelectron Eng 83:1277-1279
6. Boyle DC, Kropp BR (1992) Development and comparison of methods for measuring growth of filamentous fungi on wood. Can J Microbiol 38:1053-1060
7. Burdsall HH (1985) A contribution to the taxonomy of the genus Phanerochaete (Corticiaceae, Aphyllophorales). Mycologia memoir no. 10. Cramer, Braunschweig
8. 13C nuclear magnetic resonance studies of wood decay. II White rot decay of paper birch. Holzforschung 48:186-192
9. Fackler K, Gradinger C, Hinterstoisser B, Messner K, Schwanninger M (2006) Lignin degradation by white rot fungi on spruce wood shavings during short-time solid-state fermentations monitored by near infrared spectroscopy. Enzyme Microb Tech 39(7):1476-1483 (Pubitemid 44402691)
10. Fackler K, Gradinger C, Schmutzer C, Tavzes C, Burgert I, Schwanninger M, Hinterstoisser B, Watanabe T, Messner K (2007) Biotechnological wood modification with selective white-rot fungi and its molecular mechanisms. Food Technol Biotech 45(3):269-276 (Pubitemid 47614792)
11. Fackler K, Stevanic JS, Ters T, Hinterstoisser B, Schwanninger M, Salmen L (2011) FT-IR imaging microscopy to localise and characterise simultaneous and selective white-rot decay within spruce wood cells. Holzforschung 65:411-420
12. Faix O (1991) Classification of lignins from different botanical origins by FT-IR spectroscopy. Holzforschung 45(Suppl):21-27
13. Faix O (1992) Fourier transform infrared spectroscopy. In: Lin SY, Dence CW (eds) Methods in lignin chemistry. Springer, Berlin, pp 83-109
14. Faix O, Beinhoff O (1988) FTIR spectra of milled wood lignins and lignin polymer models (DHP's) with enhanced resolution obtained by deconvolution. J Wood Chem Technol 8(4):505-522
15. Faix O, Mozuch MD, Kirk TK (1985) Degradation of gymnosperm (guaiacyl) vs. angiosperm (syringyl/guaiacyl) lignins by Phanerochaete chrysosporium. Holzforschung 39(4):203-208
16. Faix O, Bremer J, Schmidt O, Stevanovic T (1991) Monitoring of chemical changes in white-rot degraded beech wood by pyrolysis-gas chromatography and Fourier transform infrared spectroscopy. J Anal Appl Pyrolysis 21:147-162
17. Gierlinger N, Goswami L, Schmidt M, Burgert I, Coutand C, Rogge T, Schwanninger M (2008) In situ FT-IR microscopic study on enzymatic treatment of poplar wood cross-sections. Biomacromol 9:2194-2201
18. Goacher R, Jeremic D, Master ER (2011) Expanding the library of secondary ions that distinguish lignin and polysaccharides in ToF-SIMS analysis of wood. Anal Chem 83:804-812
19. Hammel KE, Cullen D (2008) Role of fungal peroxidases in biological ligninolysis. Curr Opin Plant Biol 11(3):349-355
20. Hatakka A (1994) Lignin-modifying enzymes from selected white-rot fungi: production and role from in lignin degradation. FEMS Microbiol Rev 13(2-3):125-135
21. Hibbett DS, Donoghue MJ (2001) Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes. Sys Biol 50:215-242
22. Högberg N, Svegården IB, Kauserud H (2006) Isolation and characterization of 15 polymorphic microsatellite markers for the devastating dry rot fungus, Serpula lacrymans. Mol Eco Notes 6 (4):1022-1024 (Pubitemid 44807929)
23. Hon DNS, Shiraishi N (2001) Wood and cellulose chemistry. Marcel Dekker, New York
24. Irbe I, Andersons B, Chirkova J, Kallavus U, Andersone I, Faix O (2006) On the changes of pinewood (Pinus sylvestris L.). Chemical composition and ultrastructure during the attack by brown-rot fungi Postia placenta and Coniophora puteana. Int Biodeter Biodeg 57(2):99-106 (Pubitemid 43332546)
25. Jensen KA Jr, Houtman CJ, Ryan ZC, Hammel KE (2001) Pathways for extracellular Fenton chemistry in the brown rot basidiomycete Gloeophyllum trabeum. Appl Environ Microbiol 67:2705-2711 (Pubitemid 33639747)
26. Jung S, Foston M, Sullards CM, Ragauskas AJ (2010) Surface characterization of dilute acid pretreated Populus deltoides by ToF-SIMS. Energy Fuel 24:1347-1357
27. Kelley SS, Jellison J, Goodell B (2002) Use of NIR and pyrolysis-MSMS coupled with multivariate analysis for detecting the chemical changes associated with brown-rot biodegradation of spruce wood. FEMS Microbiol Lett 209(1):107-111 (Pubitemid 34457990)
28. Kersten P, Cullen D (2007) Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium. Fungal Genet Biol 44(2):77-87 (Pubitemid 46038784)
29. Kirk TK, Cullen D (1998) Enzymology and molecular genetics of wood degradation by white-rot fungi. In: Young RA, Akhtar M (eds) Environmentally friendly technologies for the pulp and paper industry. Wiley, New York, pp 273-308
30. Kirk TK, Schultz E, Connors WJ, Lorenz LF, Zeikus JG (1978) Influence of culture parameters on lignin metabolism by Phanerochaete chrysosporium. Arch Microbiol 117:277-285 (Pubitemid 8362081)
31. MacDonald J, Doering M, Canam T, Gong Y, Guttman D, Campbell M, Master ER (2011) Transcriptomic analysis of the softwood-degrading white-rot fungus Phanerochaete carnosa reveals concerted gene expression responses to growth on coniferous and deciduous wood. Appl Environ Microbiol 77(10):3211-3218
32. Mahajan S, Master ER (2010) Proteomic characterization of lignocellulose-degrading enzymes secreted by Phanerochaete carnosa grown on spruce and microcrystalline cellulose. Appl Microbiol Biotechnol 86(6):1903-1914
33. Marin S, Ramos AJ, Sanchis V (2005) Comparison of methods for the assessment of growth of food spoilage moulds in solid substrates. Int J Food Microbiol 99:329-341 (Pubitemid 40460343)
34. Martinez D, Larrondo LF, Putnam N, Sollewijn Gelpke MD, Huang K, Chapman J, Helfenbein KG, Ramaiya P, Detter JC, Larimer F, Coutinho PM, Henrissat B, Berka R, Cullen D, Rokhsar D (2004) Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat Biotechnol 22:695-700 (Pubitemid 38702825)
35. Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Splinter BonDurant S, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavin JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D (2009) Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc Natl Acad Sci USA 106(6):1954-1959
36. Nygren H, Eriksson C, Malmberg P, Sahlin H, Carlsson L, Lausmaa J, Sjovall P (2003) A cell preparation method allowing subcellular localization of cholesterol and phosphocholine with imaging ToF-SIMS. Colloid Surface B 30:87-92 (Pubitemid 36623333)
37. Otjen L, Blanchette RA (1986) A discussion of microstructural changes in wood during decomposition by white rot basidiomycetes. Can J Bot 64:905-911
38. Pandey KK, Pitman AJ (2003) FTIR studies of the changes in wood chemistry following decay by brown-rot and white-rot fungi. Int Biodeter Biodegrad 52:151-160 (Pubitemid 37274460)
39. Rowell RM (2005) Handbook of wood chemistry and wood composites. CRC, Boca Raton
40. Saito K, Kato T, Tsuji Y, Fukushima K (2005) Identifying the characteristic secondary ions of lignin polymer using ToF-SIMS. Biomacromol 6:678-683 (Pubitemid 40467809)
41. Schwanninger M, Rodrigues JC, Pereira H, Hinterstoisser B (2004) Effects of short-time vibratory ball milling on the shape of FT-IR spectra of wood and cellulose. Vib Spec 36:23-40
42. Scott GM, Akhtar M, Swaney RE, Houtman CJ (2002) Recent developments in biopulping technology at Madison, WI. Prog Biotechnol 21:61-71
43. Sodhi R (2004) Time-of-flight secondary ion mass spectrometry (ToF-SIMS): versatility in chemical and imaging surface analysis. Analyst 129:483-487
44. Yelle DJ, Ralph J, Lu F, Hammel KE (2008) Evidence of cleavage of lignin by a brown rot basidiomycete. Env Microbiol 10(7):1844-1849 (Pubitemid 351793624)
45. Zhu JY, Pan X, Zalesny RE (2010) Pretreatment of woody biomass for biofuel production: energy efficiency, technologies, and recalcitrance. Appl Microbiol Biotechnol 87:847-857