Genetic diversity of the mycobacterium tuberculosis beijing family based on snp and VNTR typing profiles in asian countries

PLoS ONE

Volumn 7, Issue 7, 2012, Pages

  Chen, Yih Yuan ^a   Chang, Jia Ru ^a   Huang, Wei Feng ^a   Kuo, Shu Chen ^a   Su, Ih Jen ^a   Sun, Jun Ren ^b   Chiueh, Tzong Shi ^b   Huang, Tsi Shu ^c   Chen, Yao Shen ^c   Dou, Horng Yunn ^a,d  

^a NATIONAL HEALTH RESEARCH INSTITUTES   (Taiwan)

^b TRI SERVICE GENERAL HOSPITAL   (Taiwan)

^c KAOHSIUNG VETERANS GENERAL HOSPITAL   (Taiwan)

^d TAIPEI MEDICAL UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASIA; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; CLONAL EVOLUTION; GENE CLUSTER; GENE LOCUS; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHICAL VARIATION (SPECIES); INTERSPERSED REPEAT; JAPAN; MULTILOCUS SEQUENCE TYPING; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PHYLOGENY; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTH KOREA; STRAIN DIFFERENCE; TAIWAN; THAILAND; VARIABLE NUMBER OF TANDEM REPEAT;

ALLELES; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; GENETIC LOCI; GENETIC VARIATION; GENOTYPE; HUMANS; JAPAN; MINISATELLITE REPEATS; MYCOBACTERIUM TUBERCULOSIS; PHYLOGENY; PHYLOGEOGRAPHY; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; REPUBLIC OF KOREA; TAIWAN; THAILAND;

MYCOBACTERIUM TUBERCULOSIS;

EID: 84863759346     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0039792     Document Type: Article

References (33)

1. Bifani PJ, Mathema B, Kurepina NE, Kreiswirth BN, (2002) Global dissemination of the Mycobacterium tuberculosis W-Beijing family strains. Trends Microbiol 10: 45-52.
2. Filliol I, Driscoll JR, van Soolingen D, Kreiswirth BN, Kremer K, et al. (2003) Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study. J Clin Microbiol 41: 1963-1970.
3. Glynn JR, Whiteley J, Bifani PJ, Kremer K, van Soolingen D, (2002) Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review. Emerg Infect Dis 8: 843-849.
4. Hanekom M, van der Spuy GD, Gey van Pittius NC, McEvoy CR, Ndabambi SL, et al. (2007) Evidence that the spread of Mycobacterium tuberculosis strains with the Beijing genotype is human population dependent. J Clin Microbiol 45: 2263-2266.
5. Mokrousov I, Ly HM, Otten T, Lan NN, Vyshnevskyi B, et al. (2005) Origin and primary dispersal of the Mycobacterium tuberculosis Beijing genotype: clues from human phylogeography. Genome Res 15: 1357-1364.
6. van Soolingen D, Qian L, de Haas PE, Douglas JT, Traore H, et al. (1995) Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia. J Clin Microbiol 33: 3234-3238.
7. Kurepina NE, Sreevatsan S, Plikaytis BB, Bifani PJ, Connell ND, et al. (1998) Characterization of the phylogenetic distribution and chromosomal insertion sites of five IS6110 elements in Mycobacterium tuberculosis: non-random integration in the dnaA-dnaN region. Tuber Lung Dis 79: 31-42.
8. Mokrousov I, Narvskaya O, Limeschenko E, Otten T, Vyshnevskiy B, (2002) Novel IS6110 insertion sites in the direct repeat locus of Mycobacterium tuberculosis clinical strains from the St. Petersburg area of Russia and evolutionary and epidemiological considerations. J Clin Microbiol 40: 1504-1507.
9. Mokrousov I, Narvskaya O, Otten T, Vyazovaya A, Limeschenko E, et al. (2002) Phylogenetic reconstruction within Mycobacterium tuberculosis Beijing genotype in northwestern Russia. Res Microbiol 153: 629-637.
10. Mokrousov I, Jiao WW, Sun GZ, Liu JW, Valcheva V, et al. (2006) Evolution of drug resistance in different sublineages of Mycobacterium tuberculosis Beijing genotype. Antimicrob Agents Chemother 50: 2820-2823.
11. Bifani PJ, Mathema B, Liu Z, Moghazeh SL, Shopsin B, et al. (1999) Identification of a W variant outbreak of Mycobacterium tuberculosis via population-based molecular epidemiology. JAMA 282: 2321-2327.
12. Milan SJ, Hauge KA, Kurepina NE, Lofy KH, Goldberg SV, et al. (2004) Expanded geographical distribution of the N family of Mycobacterium tuberculosis strains within the United States. J Clin Microbiol 42: 1064-1068.
13. Supply P, Allix C, Lesjean S, Cardoso-Oelemann M, Rusch-Gerdes S, et al. (2006) Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis. J Clin Microbiol 44: 4498-4510.
14. Dou HY, Tseng FC, Lin CW, Chang JR, Sun JR, et al. (2008) Molecular epidemiology and evolutionary genetics of Mycobacterium tuberculosis in Taipei. BMC Infect Dis 8: 170.
15. Dou HY, Tseng FC, Lu JJ, Jou R, Tsai SF, et al. (2008) Associations of Mycobacterium tuberculosis genotypes with different ethnic and migratory populations in Taiwan. Infect Genet Evol 8: 323-330.
16. Chang JR, Lin CH, Tsai SF, Su IJ, Tseng FC, et al. (2011) Genotypic analysis of genes associated with transmission and drug resistance in the Beijing lineage of Mycobacterium tuberculosis. Clin Microbiol Infect 17(9): 1391-1396.
17. Iwamoto T, Yoshida S, Suzuki K, Wada T, (2008) Population structure analysis of the Mycobacterium tuberculosis Beijing family indicates an association between certain sublineages and multidrug resistance. Antimicrob Agents Chemother 52: 3805-3809.
18. Wada T, Iwamoto T, Maeda S, (2009) Genetic diversity of the Mycobacterium tuberculosis Beijing family in East Asia revealed through refined population structure analysis. FEMS Microbiol Lett 291: 35-43.
19. Sola C, Filliol I, Legrand E, Lesjean S, Locht C, et al. (2003) Genotyping of the Mycobacterium tuberculosis complex using MIRUs: association with VNTR and spoligotyping for molecular epidemiology and evolutionary genetics. Infect Genet Evol 3: 125-133.
20. Shamputa IC, Lee J, Allix-Beguec C, Cho EJ, Lee JI, et al. (2010) Genetic diversity of Mycobacterium tuberculosis isolates from a tertiary care tuberculosis hospital in South Korea. J Clin Microbiol 48: 387-394.
21. Faksri K, Drobniewski F, Nikolayevskyy V, Brown T, Prammananan T, et al. (2011) Genetic diversity of the Mycobacterium tuberculosis Beijing family based on IS6110, SNP, LSP and VNTR profiles from Thailand. Infect Genet Evol 11: 1142-1149.
22. Hanekom M, Gey van Pittius NC, McEvoy C, Victor TC, Van Helden PD, et al. (2011) Mycobacterium tuberculosis Beijing genotype: a template for success. Tuberculosis (Edinb) 91: 510-523.
23. Schurch AC, Kremer K, Hendriks AC, Freyee B, McEvoy CR, et al. (2011) SNP/RD Typing of Mycobacterium tuberculosis Beijing Strains Reveals Local and Worldwide Disseminated Clonal Complexes. PLoS One 6: e28365.
24. Gagneux S, DeRiemer K, Van T, Kato-Maeda M, de Jong BC, et al. (2006) Variable host-pathogen compatibility in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 103: 2869-2873.
25. Wada T, Iwamoto T, (2009) Allelic diversity of variable number of tandem repeats provides phylogenetic clues regarding the Mycobacterium tuberculosis Beijing family. Infect Genet Evol 9: 921-926.
26. Dou HY, Huang SC, Su IJ, (2011) Prevalence of Mycobacterium tuberculosis in Taiwan: A Model for Strain Evolution Linked to Population Migration. Int J Evol Biol 2011: 937434.
27. Mokrousov I, Valcheva V, Sovhozova N, Aldashev A, Rastogi N, et al. (2009) Penitentiary population of Mycobacterium tuberculosis in Kyrgyzstan: exceptionally high prevalence of the Beijing genotype and its Russia-specific subtype. Infect Genet Evol 9: 1400-1405.
28. Kremer K, van-der-Werf MJ, Au BK, Anh DD, Kam KM, et al. (2009) Vaccine-induced immunity circumvented by typical Mycobacterium tuberculosis Beijing strains. Emerg Infect Dis 15: 335-339.
29. Reed MB, Domenech P, Manca C, Su H, Barczak AK, et al. (2004) A glycolipid of hypervirulent tuberculosis strains that inhibits the innate immune response. Nature 431: 84-87.
30. Iwamoto T, Fujiyama R, Yoshida S, Wada T, Shirai C, et al. (2009) Population structure dynamics of Mycobacterium tuberculosis Beijing strains during past decades in Japan. J Clin Microbiol 47: 3340-3343.
31. Wada T, Fujihara S, Shimouchi A, Harada M, Ogura H, et al. (2009) High transmissibility of the modern Beijing Mycobacterium tuberculosis in homeless patients of Japan. Tuberculosis (Edinb) 89: 252-255.
32. Supply P, Mazars E, Lesjean S, Vincent V, Gicquel B, et al. (2000) Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol Microbiol 36: 762-771.
33. Hunter PR, Gaston MA, (1988) Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 26: 2465-2466.