Genetic and functional characterization of cyclic lipopeptide white-line-inducing principle (WLIP) production by rice rhizosphere isolate pseudomonas putida RW10S2

Applied and Environmental Microbiology

Volumn 78, Issue 14, 2012, Pages 4826-4834

  Rokni Zadeh, Hassan ^a   Li, Wen ^a   Sanchez Rodriguez, Aminael ^a   Sinnaeve, Davy ^b   Rozenski, Jef ^c   Martins, José C ^b   De Mot, René ^a  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

^c REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

AGAR MEDIUM; BIOFILM FORMATION; BIOSYNTHETIC GENE; CYCLIC LIPOPEPTIDES; DIAGNOSTIC TOOLS; ECOLOGICAL RELEVANCE; FUNCTIONAL CHARACTERIZATION; GENES ENCODING; HEMOLYTIC ACTIVITY; NONRIBOSOMAL PEPTIDE SYNTHETASES; PSEUDOMONAS PUTIDA; QUORUM-SENSING SYSTEMS; RICE RHIZOSPHERES; SECONDARY METABOLITES; STRUCTURAL GROUPS; WHITE LINES; XANTHOMONAS; XANTHOMONAS SPECIES;

BACTERIA; BIOCHEMISTRY; BIOSYNTHESIS; GRANULAR MATERIALS; SENSORS; SOILS; TRANSCRIPTION;

GENE EXPRESSION REGULATION;

BACTERIAL PROTEIN; CYCLOPEPTIDE; LIPOPEPTIDE; NONRIBOSOMAL PEPTIDE SYNTHETASE; PEPTIDE SYNTHASE;

ANTAGONISM; BACTERIUM; BIOCONTROL AGENT; BIOFILM; BIOLOGICAL CONTROL; COLONY; ENZYME ACTIVITY; GENE EXPRESSION; GENETIC ANALYSIS; GROWTH RATE; INHIBITOR; MUSHROOM; PATHOGEN; PEPTIDE; PHENOTYPE; RHIZOSPHERE; RICE; SECONDARY METABOLITE; SWARMING; TAXONOMY;

ARTICLE; BIOFILM; BIOSYNTHESIS; CEREBROSPINAL FLUID; CULTURE MEDIUM; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; OPERON; PHYSIOLOGY; PSEUDOMONAS PUTIDA; RHIZOSPHERE; RICE;

BACTERIAL PROTEINS; BIOFILMS; CULTURE MEDIA; GENE EXPRESSION REGULATION, BACTERIAL; LIPOPEPTIDES; OPERON; ORYZA SATIVA; PEPTIDE SYNTHASES; PEPTIDES, CYCLIC; PSEUDOMONAS PUTIDA; RHIZOSPHERE;

BASIDIOMYCOTA; PSEUDOMONAS PUTIDA; PSEUDOMONAS REACTANS; PSEUDOMONAS TOLAASII; XANTHOMONAS;

EID: 84863753779     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00335-12     Document Type: Article

References (55)

1. Akama H, et al. 2004. Crystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: dual modes of membrane anchoring and occluded cavity end. J. Biol. Chem. 279:52816-52819.
2. Ansari MZ, Yadav G, Gokhale RS, Mohanty D. 2004. NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases. Nucleic Acids Res. 32:W405-W413.
3. Aziz RK, et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75.
4. Balibar CJ, Vaillancourt FH, Walsh CT. 2005. Generation of D amino acid residues in assembly of arthrofactin by dual condensation/ epimerization domains. Chem. Biol. 12:1189-1200.
5. Berti AD, Greve NJ, Christensen QH, Thomas MG. 2007. Identification of a biosynthetic gene cluster and the six associated lipopeptides involved in swarming motility of Pseudomonas syringae pv. tomato DC3000. J. Bacteriol. 189:6312-6323.
6. Cui X, Harling R. 2005. N-Acyl-homoserine lactone-mediated quorum sensing blockage, a novel strategy for attenuating pathogenicity of Gramnegative bacterial plant pathogens. Eur. J. Plant Pathol. 111:327-339.
7. D'aes J, De Maeyer K, Pauwelyn E, Höfte M. 2010. Biosurfactants in plant-Pseudomonas interactions and their importance to biocontrol. Environ. Microbiol. Rep. 2:359-372.
8. de Bruijn I, de Kock MJ, de Waard P, van Beek TA, Raaijmakers JM. 2008. Massetolide A biosynthesis in Pseudomonas fluorescens. J. Bacteriol. 190:2777-2789.
9. de Bruijn I, et al. 2007. Genome-based discovery, structure prediction and functional analysis of cyclic lipopeptide antibiotics in Pseudomonas species. Mol. Microbiol. 63:417-428.
10. de Bruijn I, Raaijmakers JM. 2009. Diversity and functional analysis of LuxR-type transcriptional regulators of cyclic lipopeptide biosynthesis in Pseudomonas fluorescens. Appl. Environ. Microbiol. 75:4753-4761.
11. De Keersmaecker SC, et al. 2005. Chemical synthesis of (S)-4,5-dihydroxy-2,3-pentanedione, a bacterial signal molecule precursor, and validation of its activity in Salmonella typhimurium. J. Biol. Chem. 280: 19563-19568.
12. Drummond A, et al. 2011. Geneious, version 5.5.3. Geneious, Auckland, New Zealand.
13. Dubern JF, Coppoolse ER, Stiekema WJ, Bloemberg GV. 2008. Genetic and functional characterization of the gene cluster directing the biosynthesis of putisolvin I and II in Pseudomonas putida strain PCL1445. Microbiology 154:2070-2083.
14. Dubern JF, Lugtenberg BJ, Bloemberg GV. 2006. The ppuI-rsaL-ppuR quorum-sensing system regulates biofilm formation of Pseudomonas putida PCL1445 by controlling biosynthesis of the cyclic lipopeptides putisolvins I and II. J. Bacteriol. 188:2898-2906
15. Etchegaray A, et al. 2008. Effect of a highly concentrated lipopeptide extract of Bacillus subtilis on fungal and bacterial cells. Arch. Microbiol. 190:611-622
16. Fredslund L. 2008. Microbial degradation of xenobiotics in soil-spatial variation, bacterial motility and chemotaxis. Ph.D. thesis. University of Copenhagen, Copenhagen, Denmark.
17. Grewal SI, Han B, Johnstone K. 1995. Identification and characterization of a locus which regulates multiple functions in Pseudomonas tolaasii, the cause of brown blotch disease of Agaricus bisporus. J. Bacteriol. 177:4658-4668.
18. Gross H, Loper JE. 2009. Genomics of secondary metabolite production by Pseudomonas spp. Nat. Prod. Rep. 26:1408-1446.
19. Gross H, et al. 2007. The genomisotopic approach: a systematic method to isolate products of orphan biosynthetic gene clusters. Chem. Biol. 14: 53-63
20. Haas D, Défago G. 2005. Biological control of soil-borne pathogens by fluorescent pseudomonads. Nat. Rev. Microbiol. 3:307-319.
21. Hrabak EM, Willis DK. 1992. The lemA gene required for pathogenicity of Pseudomonas syringae pv. syringae on bean is a member of a family of two-component regulators. J. Bacteriol. 174:3011-3020.
22. Koch B, et al. 2002. Lipopeptide production in Pseudomonas sp. strain DSS73 is regulated by components of sugar beet seed exudate via the Gac two-component regulatory system. Appl. Environ. Microbiol. 68:4509-4516
23. Kuiper I, et al. 2004. Characterization of two Pseudomonas putida lipopeptide biosurfactants, putisolvin I and II, which inhibit biofilm formation and break down existing biofilms. Mol. Microbiol. 51:97-113.
24. Lapouge K, Schubert M, Allain FH, Haas D. 2008. Gac/Rsm signal transduction pathway of γ-proteobacteria: from RNA recognition to regulation of social behaviour. Mol. Microbiol. 67:241-253.
25. Li W. 2012. Molecular study of Pseudomonas putida antagonism against pathogenic Pseudomonas and Xanthomonas. Ph.D. thesis. KU Leuven, Leuven, Belgium
26. Li W, et al. 2011. Promysalin, a salicylate-containing Pseudomonas putida antibiotic, promotes surface colonization and selectively targets other Pseudomonas. Chem. Biol. 18:1320-1330.
27. Lim SP, Roongsawang N, Washio K, Morikawa M. 2009. Flexible exportation mechanisms of arthrofactin in Pseudomonas sp. MIS38. J. Appl. Microbiol. 107:157-166
28. Lo Cantore P, et al. 2006. Biological characterization of white lineinducing principle (WLIP) produced by Pseudomonas reactans NCPPB1311. Mol. Plant Microbe Interact. 19:1113-1120
29. Mendes R, et al. 2011. Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science 332:1097-1100
30. Modali SD, Zgurskaya HI. 2011. The periplasmic membrane proximal domain of MacA acts as a switch in stimulation of ATP hydrolysis by MacB transporter. Mol. Microbiol. 81:937-951
31. Mortishire-Smith RJ, et al. 1991. Determination of the structure of an extracellular peptide produced by the mushroom saprotroph Pseudomonas reactans. Tetrahedron 47:3645-3654.
32. Munsch P, Alatossava T. 2002. Several pseudomonads, associated with the cultivated mushrooms Agaricus bisporus or Pleurotus sp., are hemolytic. Microbiol. Res. 157:311-315.
33. Nybroe O, Sørensen J. 2004. Production of cyclic lipopeptides by fluorescent Pseudomonads, p 147-172. In Ramos J-L (ed), Pseudomonas, vol 3. Kluwer Academic/Plenum Publishers, New York, NY.
34. Parret AHA, Schoofs G, Proost P, De Mot R. 2003. Plant lectin-like bacteriocin from a rhizosphere-colonizing Pseudomonas isolate. J. Bacteriol. 185:897-908.
35. Qiu D, Damron FH, Mima T, Schweizer HP, Yu HD. 2008. PBAD-based shuttle vectors for functional analysis of toxic and highly regulated genes in Pseudomonas and Burkholderia spp. and other bacteria. Appl. Environ. Microbiol. 74:7422-7426.
36. Raaijmakers JM, de Bruijn I, de Kock MJ. 2006. Cyclic lipopeptide production by plant-associated Pseudomonas spp.: diversity, activity, biosynthesis, and regulation. Mol. Plant Microbe Interact. 19:699-710.
37. Raaijmakers JM, de Bruijn I, Nybroe O, Ongena M. 2010. Natural functions of lipopeptides from Bacillus and Pseudomonas: more than surfactants and antibiotics. FEMS Microbiol. Rev. 34:1037-1062.
38. Rainey PB, Brodey CL, Johnstone K. 1991. Biological properties and spectrum of activity of tolaasin, a lipodepsipeptide toxin produced by the mushroom pathogen Pseudomonas tolaasii. Physiol. Mol. Plant Pathol. 39:57-70.
39. Rainey PB, Brodey CL, Johnstone K. 1993. Identification of a gene cluster encoding three high-molecular-weight proteins, which is required for synthesis of tolaasin by the mushroom pathogen Pseudomonas tolaasii. Mol. Microbiol. 8:643-652.
40. Reder-Christ K, et al. 2012. Model membrane studies for characterization of different antibiotic activities of lipopeptides from Pseudomonas. Biochim. Biophys. Acta 1818:566-573.
41. Rokni-Zadeh H, Mangas-Losada A, De Mot R. 2011. PCR detection of novel non-ribosomal peptide synthetase genes in lipopeptide-producing Pseudomonas. Microb. Ecol. 62:941-947.
42. Roongsawang N, et al. 2003. Cloning and characterization of the gene cluster encoding arthrofactin synthetase from Pseudomonas sp. MIS38. Chem. Biol. 10:869-880.
43. Roongsawang N, Washio K, Morikawa M. 2010. Diversity of nonribosomal peptide synthetases involved in the biosynthesis of lipopeptide biosurfactants. Int. J. Mol. Sci. 12:141-172.
44. Rottig M, et al. 2011. NRPSpredictor2-a web server for predicting NRPS adenylation domain specificity. Nucleic Acids Res. 39:W362-W367.
45. Ryan RP, et al. 2011. Pathogenomics of Xanthomonas: understanding bacterium-plant interactions. Nat. Rev. Microbiol. 9:344-355.
46. Saini HS, et al. 2008. Efficient purification of the biosurfactant viscosin from Pseudomonas libanensis strain M9-3 and its physicochemical and biological properties. J. Nat. Prod. 71:1011-1015.
47. Sinnaeve D, et al. 2009. The solution structure and self-association properties of the cyclic lipodepsipeptide pseudodesmin A support its poreforming potential. Chemistry 15:12653-12662.
48. Sinnaeve D, et al. 2009. Structure and X-ray conformation of pseudodesmins A and B, two new cyclic lipodepsipeptides from Pseudomonas bacteria. Tetrahedron 65:4173-4181.
49. Steindler L, Bertani I, De Sordi L, Bigirimana J, Venturi V. 2008. The presence, type and role of N-acyl homoserine lactone quorum sensing in fluorescent Pseudomonas originally isolated from rice rhizospheres are unpredictable. FEMS Microbiol. Lett. 288:102-111.
50. Vallet-Gely I, et al. 2010. Association of hemolytic activity of Pseudomonas entomophila, a versatile soil bacterium, with cyclic lipopeptide production. Appl. Environ. Microbiol. 76:910-921.
51. Vlassak K, Holm L, Duchateau L, Vanderleyden J, De Mot R. 1992. Isolation and characterization of fluorescent Pseudomonas associated with the roots of rice and banana grown in Sri Lanka. Plant Soil 145:51-63.
52. Wang N, Lu SE, Wang J, Chen ZJ, Gross DC. 2006. The expression of genes encoding lipodepsipeptide phytotoxins by Pseudomonas syringae pv. syringae is coordinated in response to plant signal molecules. Mol. Plant Microbe Interact. 19:257-269.
53. Washio K, Lim SP, Roongsawang N, Morikawa M. 2010. Identification and characterization of the genes responsible for the production of the cyclic lipopeptide arthrofactin by Pseudomonas sp. MIS38. Biosci. Biotechnol. Biochem. 74:992-999.
54. Wong WC, Preece TF. 1979. Identification of Pseudomonas tolaasii: the white line in agar and mushroom tissue block rapid pitting tests. Appl. Bacteriol. 47:401-407.
55. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.