Diversity of microorganisms in sediments of the Jiaojiang Estuary as estimated by Biolog and PCR-DGGE

Huanjing Kexue Xuebao/Acta Scientiae Circumstantiae

Volumn 32, Issue 6, 2012, Pages 1436-1444

  Du, Ping ^a   Liu, Jingjing ^a   Shen, Lidong ^b   Hu, Baolan ^b   Zeng, Jiangning ^a   Chen, Quanzhen ^a   Shou, Lu ^a   Liao, Yibo ^a  

^a Chongqing Institute of Geology and Mineral Resources   (China)

^b ZHEJIANG UNIVERSITY   (China)

Author keywords

Bacterial community structure; Biolog; Diversity; Microbial catabolism; PCR DGGE; Sediment of Jiaojiang Estuary

Indexed keywords

AMINO ACID; BACTERIUM; DIVERSITY INDEX; ESTUARINE ECOSYSTEM; ESTUARINE SEDIMENT; GENETIC VARIATION; HETEROGENEITY; INTERTIDAL ENVIRONMENT; MICROBIAL COMMUNITY; MICROBIAL ECOLOGY; ORGANIC MATTER; PHYSICOCHEMICAL PROPERTY; POLYMERASE CHAIN REACTION; SPECIES DIVERSITY;

CHINA; JIAOJIANG ESTUARY; ZHEJIANG;

BACTERIA (MICROORGANISMS);

EID: 84863748725     PISSN: 02532468     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (35)

1. Adão H, Alves A S, Patrício J, et al. 2009.Spatial distribution of subtidal Nematoda communities along the salinity gradient in southern European estuaries [J]. Acta Oecologica, 35 (2): 287-300.
2. Bossio D A, Scow K M. 1995.Impact of carbon and flooding on the metabolic diversity of microbial communities in soils [J]. Applied and Environmental Microbiology, 61 (11): 4043-4050.
3. Chen D C, He H. 1998.Hydrologic characteristics of Taizhou Bay-Jiaojiang estuary [J]. Hydrology, (5): 52-54 (in Chinese)
4. Chen L G, Fan J F, Guan D M, et al. 2010.Analysis of temporal and spatial distribution of nitrobacteria in sediment of Liaohe Estuary [J]. Marine Environmental Science, 29 (2): 174-178 (in Chinese)
5. Dai J H, Sun M Y. 2007.Organic matter sources and their use by bacteria in the sediments of the Altamaha estuary during high and low discharge periods [J]. Organic Geochemistry, 38: 1-15.
6. Garland J L, Mills A L. 1991.Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole carbon source utilization [J]. Applied and Environmental Microbiology, 57: 2351-2359.
7. Guo C L, Ke L, Dang Z, et al. 2011.Temporal changes in Sphingomonas and Mycobacterium populations in mangrove sediments contaminated with different concentrations of polycyclic aromatic hydrocarbons (PAHs) [J]. Marine Pollution Bulletin, 62: 133-139.
8. Guo P Y, Shen H T. 2003.Research advance in estuarine phytoplankton ecology [J]. Chinese Journal of Applied Ecology, 14 (1): 139-142 (in Chinese)
9. Haritash A K, Kaushik C P. 2009.Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): A review [J]. Journal of Hazardous Materials, 169: 1-15.
10. Henriques I S, Alves A, Tacão M, et al. 2006.Seasonal and spatial variability of free-living bacterial community composition along an estuarine gradient (Ria de Aveiro, Portugal) [J]. Estuarine, Coastal and Shelf Science, 68: 139-148.
11. Hobbie J E. Translated by Meng W, Lei K, Zheng B H, et al. 2005.Estuaries Science-Research and Practice of Synthesis Method [M]. Beijing: Ocean Press. 1-5 (in Chinese)
12. Jiang J H, Zhu L Z, Zhang M. 2006.Concentration and sources of typical organic contaminants in seawater, sediment and organisms in Jiaojiang Bay [J]. Environmental Chemistry, 25 (5): 546-549 (in Chinese)
13. Langston W J, Pope N D, Jonas P J C, et al. 2010.Contaminants in fine sediments and their consequences for biota of the Severn Estuary [J]. Marine Pollution Bulletin, 61: 68-82.
14. Liu J, Meng F P, Wang Z Y, et al. 2010.Distribution characteristics of total organic carbon, oil, sulfide and microorganisms in the Estuary Tidal Beach of Sanba River [J]. Research of Environmental Sciences, 23 (4): 491-496 (in Chinese)
15. Mai M, Yan Y, Wu Y X. 2009.Analysis on hydrographical environment and seabed morphologica processes characteristics in Taizhou Bay [J]. Journal of Waterway and Harbor, 30 (4): 246-252 (in Chinese)
16. Mucha A P, Vasconcelos M T S D, Bordalo A A. 2003.Macrobenthic community in the Douro Estuary: relations with trace metals and natural sediment characteristics [J]. Environmental Pollution, 121: 169-180.
17. Muyzer G, de Waal E C, Uitterlinden A G. 1993.Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA [J]. Applied and Environmental Microbiology, 59 (3): 695-700.
18. O'Connell S, Lawson R D, Watwood M E, et al. 2000.BASIC program for reduction of data from community-level physiological profiling using biolog microplates: rationale and critical interpretation of data [J]. Journal of MicrobiologicaI Methods, 40: 213-220.
19. Shan X J, Xian W W, Wu Y F. 2004.Progress of studies on ichthyoplankton ecology of Changjiang river estuary [J]. Transaction of Oceanology and Limnology, (4): 87-93 (in Chinese)
20. Sheng L X, Li M T, Xu J B. 2007.Research advances in microbial degradation of nitrobenzene and its substituted compounds [J]. Chinese Journal of Applied Ecology, 18 (7): 1654-1660 (in Chinese)
21. Singh S K, Verma P, Ramaiah N, et al. 2010.Phylogenetic diversity of archaeal 16S rRNA and ammonia monooxygenase genes from tropical estuarine sediments on the central west coast of India [J]. Research in Microbiology, 161: 177-186.
22. Sorci J J, Paulauskis J D, Ford T E. 1999.16S rRNA restriction fragment length polymorphism analysis of bacterial diversity as a biomarker of ecological health in polluted sediments from New Bedford Harbor, Massachusetts, USA [J]. Marine Pollution Bulletin, 38 (8): 663-675.
23. State Technology Supervision Bureau. 2008a. GB 12763-2008 The Specification for Marine Surveying [S]. Beijing: Standards Press of China (in Chinese)
24. State Technology Supervision Bureau. 2008b. GB 17378-2008 The Specification for Marine Monitoring [S]. Beijing: Standards Press of China (in Chinese)
25. Thottathil S D, Balachandran K K, Jayalakshmy K V, et al. 2008.Tidal switch on metabolic activity: Salinity induced responses on bacterioplankton metabolic capabilities in a tropical estuary [J]. Estuarine, Coastal and Shelf Science, 78 (4): 665-673.
26. Tian Y, Liu H J, Zheng T L, et al. 2008.PAHs contamination and bacterial communities in mangrove surface sediments of the Jiulong River Estuary, China [J]. Marine Pollution Bulletin, 57: 707-715.
27. Vezzulli L, Pruzzo C, Fabiano M. 2004.Response of the bacterial community to in situ bioremediation of organic-rich sediments [J]. Marine Pollution Bulletin, 49 (9/10): 740-751.
28. Wijnhoven S, Sistermans W, Hummel H. 2008.Historic developments in macrozoobenthos of the Rhinee-Meuse estuary: From a tidal inlet to a freshwater lake [J]. Estuarine, Coastal and Shelf Science, 76: 95-110.
29. Xu H Q, Xiao R L, Song T Q, et al. 2008.Effects of mulching and intercropping on the functional diversity of soil microbial communities in tea plantations [J]. Biodiversity Science, 16 (2): 166-174 (in Chinese)
30. Yang Y F, Wang Q, Chen J F, et al. 2006.Research advance in estuarine zooplankton ecology [J]. Acta Ecologica Sinica, 26 (2): 576-585 (in Chinese)
31. Yang Y Y, Li Z J, Liang X H, et al. 2009.Influences of bacillus on metabolic functions of microbial communities in fishponds [J]. Journal of Microbiology, 29 (3): 11-17 (in Chinese)
32. Zhao Y Q, Zeng J N, Gao A G, et al. 2009.Community pattern and diversity of macrozoobenthos in an intertidal flat, Jiaojiang Estuary [J]. Biodiversity Science, 17 (3): 303-309 (in Chinese)
33. Zhang S, Zhang C S, Tian X P, et al. 2010.The study of diversities of marine microbes in China [J]. Bulletin of the Chinese Academy of Sciences, 25 (6): 651-658 (in Chinese)
34. Zheng C L, Qu B C, Wang J, et al. 2009.Isolation and characterization of a novel nitrobenzene-degrading bacterium with high salinity tolerance: Micrococcus luteus [J]. Journal of Hazardous Materials, 165: 1152-1158.
35. Zheng J L, Li J W, Chao F H. 2001.Advance in study on biodegradation of aniline, nitrobenzene and trinitrotoluene [J]. Microbiology, 28 (5): 85-88 (in Chinese)