Structural studies of the O-antigen polysaccharide from Escherichia coli TD2158 having O18 serogroup specificity and aspects of its interaction with the tailspike endoglycosidase of the infecting bacteriophage HK620

Carbohydrate Research

Volumn 357, Issue , 2012, Pages 118-125

  Zaccheus, Mona V ^a   Broeker, Nina K ^b   Lundborg, Magnus ^a   Uetrecht, Charlotte ^b   Barbirz, Stefanie ^b   Widmalm, Göran ^a  

^a STOCKHOLM UNIVERSITY   (Sweden)

^b UNIVERSITY OF POTSDAM   (Germany)

Author keywords

Endoglycosidase; Escherichia coli; Lipopolysaccharide; Mass spectrometry; NMR; Tailspike

Indexed keywords

DISSOCIATION CONSTANT; ENDOGLYCOSIDASE; HEXASACCHARIDES; HIGH AFFINITY BINDING; LIPOPOLYSACCHARIDES; MALDI TOF MS; NMR ANALYSIS; O-ANTIGEN POLYSACCHARIDES; REPEATING UNIT; STRUCTURAL STUDIES; SUGAR ANALYSIS; TAILSPIKE;

ANTIGENS; BACTERIOPHAGES; DISSOCIATION; MASS SPECTROMETRY; NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OLIGOSACCHARIDES;

ESCHERICHIA COLI;

BACTERIAL POLYSACCHARIDE; BACTERIAL PROTEIN; N ACETYL BETA GLUCOSAMINIDASE; O ANTIGEN; OLIGOSACCHARIDE; TAILSPIKE PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIOPHAGE; BACTERIOPHAGE HK620; BINDING AFFINITY; BINDING SITE; CARBOHYDRATE ANALYSIS; CARBON NUCLEAR MAGNETIC RESONANCE; ESCHERICHIA COLI; HETERONUCLEAR SINGLE QUANTUM COHERENCE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN CLEAVAGE; PROTON NUCLEAR MAGNETIC RESONANCE;

CARBOHYDRATE CONFORMATION; CARBOHYDRATE SEQUENCE; CATALYTIC DOMAIN; ESCHERICHIA COLI; GLYCOSIDE HYDROLASES; HYDROGEN BONDING; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; O ANTIGENS; PODOVIRIDAE; SURFACE PROPERTIES; VIRAL TAIL PROTEINS;

ESCHERICHIA COLI;

EID: 84863723955     PISSN: 00086215     EISSN: 1873426X     Source Type: Journal    
DOI: 10.1016/j.carres.2012.05.022     Document Type: Article

References (46)

1. C.R. Raetz, and C. Whitfield Annu. Rev. Biochem. 71 2002 635 700
2. C. Whitfield Annu. Rev. Biochem. 75 2006 39 68
3. S. Herget, P.V. Toukach, R. Ranzinger, W.E. Hull, Y.A. Knirel, and C.W. von der Lieth BMC Struct. Biol. 8 2008 35
4. P.-E. Jansson, R. Stenutz, and G. Widmalm Carbohydr. Res. 341 2006 1003 1010
5. L. Wang, Q. Wang, and P.R. Reeves The Variation of O Antigens in Gram-Negative Bacteria X. Wang, P.J. Quinn, Endotoxins: Structure, Function and Recognition 2010 Springer Dordrecht 123 152
6. D. Andres, C. Hanke, U. Baxa, A. Seul, S. Barbirz, and R. Seckler J. Biol. Chem. 285 2010 36768 36775
7. D. Andres, Y. Roske, C. Doering, U. Heinemann, R. Seckler, and S. Barbirz Mol. Microbiol. 83 2012 1244 1253
8. T.S. Dhillon, A.P.W. Poon, D. Chan, and A.J. Clark FEMS Microbiol. Lett. 161 1998 129 133
9. A.J. Clark, W. Inwood, T. Cloutier, and T.S. Dhillon J. Mol. Biol. 311 2001 657 679
10. S. Barbirz, J.J. Müller, C. Uetrecht, A.J. Clark, U. Heinemann, and R. Seckler Mol. Microbiol. 69 2008 303 316
11. S. Steinbacher, U. Baxa, S. Miller, A. Weintraub, R. Seckler, and R. Huber Proc. Natl. Acad. Sci. U.S.A. 93 1996 10584 10588
12. J.J. Müller, S. Barbirz, K. Heinle, A. Freiberg, R. Seckler, and U. Heinemann Structure 16 2008 766 775
13. U. Baxa, A. Cooper, A. Weintraub, W. Pfeil, and R. Seckler Biochemistry 40 2001 5144 5150
14. B. Jann, A.S. Shashkov, D.S. Gupta, and K. Jann Eur. J. Biochem. 210 1992 241 248
15. P.-E. Jansson, L. Kenne, and G. Widmalm Carbohydr. Res. 193 1989 322 325
16. D.R. Bundle, and R.U. Lemieux Methods Carbohydr. Chem. 7 1976 79 86
17. P. Söderman, P.-E. Jansson, and G. Widmalm J. Chem. Soc., Perkin Trans. 2 1998 639 648
18. V.V. Krishnamurthy Magn. Reson. Chem. 35 1997 9 12
19. M. Linnerborg, A. Weintraub, and G. Widmalm Eur. J. Biochem. 266 1999 246 251
20. D.J. Harvey Mass Spectrom. Rev. 31 2012 183 311
21. M. Lundborg, and G. Widmalm Anal. Chem. 83 2011 1514 1517
22. M. Lundborg, C. Fontana, and G. Widmalm Biomacromolecules 12 2011 3851 3855
23. P.-E. Jansson, L. Kenne, and G. Widmalm Carbohydr. Res. 188 1989 169 191
24. N.-Y. Hsu, W.-B. Yang, C.-H. Wong, Y.-C. Lee, R.T. Lee, Y.-S. Wang, and C.-H. Chen Rapid Commun. Mass Spectrom. 21 2007 2137 2146
25. J.-R. Brisson, and M.B. Perry Biochem. Cell Biol. 66 1988 1066 1077
26. B. Lindberg, K. Leontein, U. Lindquist, S.B. Svenson, G. Wrangsell, A. Dell, and M. Rogers Carbohydr. Res. 174 1988 313 322
27. M. Staaf, F. Urbina, A. Weintraub, and G. Widmalm Eur. J. Biochem. 262 1999 56 62
28. E. Säwén, J. Östervall, C. Landersjö, M. Edblad, A. Weintraub, M. Ansaruzzaman, and G. Widmalm Carbohydr. Res. 348 2012 99 103
29. P.-E. Jansson, and G. Widmalm Carbohydr. Res. 256 1994 327 330
30. N.S. Kumar, R.M.S.K. Ratnayake, G. Widmalm, and P.-E. Jansson Carbohydr. Res. 291 1996 109 114
31. S. Guan, D.A. Bastin, and N.K. Verma Microbiology 145 1999 1263 1273
32. J. Landström, E.-L. Nordmark, R. Eklund, A. Weintraub, R. Seckler, and G. Widmalm Glycoconjugate J. 25 2008 137 143
33. G.G. Freeman, and J.St.L. Philpot Biochem. J. 36 1942 340 356
34. U. Baxa, S. Steinbacher, S. Miller, A. Weintraub, R. Huber, and R. Seckler Biophys. J. 71 1996 2040 2048
35. K. Leontein, and J. Lönngren Methods Carbohydr. Chem. 9 1993 87 89
36. T. Parella, F. Sánchez-Ferrando, and A. Virgili J. Magn. Reson. 126 1997 274 277
37. L. Braunschweiler, and R.R. Ernst J. Magn. Reson. 53 1983 521 528
38. A. Kumar, R.R. Ernst, and K. Wüthrich Biochem. Biophys. Res. Commun. 95 1980 1 6
39. N.T. Nyberg, J.O. Duus, and O.W. Sorensen J. Am. Chem. Soc. 127 2005 6154 6155
40. K. Stott, J. Stonehouse, J. Keeler, T.L. Hwang, and A.J. Shaka J. Am. Chem. Soc. 117 1995 4199 4200
41. Ē. Kupče Methods Enzymol. 338 2002 82 111
42. M.J. Thrippleton, and J. Keeler Angew. Chem., Int. Ed. 42 2003 3938 3941
43. T. Domke J. Magn. Reson. 95 1991 174 177
44. T. De Beer, C.W.E.M. Van Zuylen, K. Hård, R. Boelens, R. Kaptein, J.P. Kamerling, and J.F.G. Vliegenthart FEBS Lett. 348 1994 1 6
45. A. Bax, and M.F. Summers J. Am. Chem. Soc. 108 1986 2093 2094
46. T.D.W. Claridge, and I. Pérez-Victoria Org. Biomol. Chem. 1 2003 3632 3634