-
1
-
-
40849097775
-
Rates of evolutionary change in viruses: patterns and determinants
-
Duffy S, Shackelton LA, Holmes EC, (2008) Rates of evolutionary change in viruses: patterns and determinants. Nat Rev Genet 9: 267-276.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 267-276
-
-
Duffy, S.1
Shackelton, L.A.2
Holmes, E.C.3
-
3
-
-
0036147047
-
Rates of molecular evolution in RNA viruses: A quantitative phylogenetic analysis
-
Jenkins GM, Rambaut A, Pybus OG, Holmes EC, (2002) Rates of molecular evolution in RNA viruses: A quantitative phylogenetic analysis. Mol Evol 54: 156-165.
-
(2002)
Mol Evol
, vol.54
, pp. 156-165
-
-
Jenkins, G.M.1
Rambaut, A.2
Pybus, O.G.3
Holmes, E.C.4
-
4
-
-
2442658990
-
A large variation in the rates of synonymous substitution for RNA viruses and its relationship to a diversity of viral infection and transmission modes
-
Hanada K, Suzuki Y, Gojobori T, (2004) A large variation in the rates of synonymous substitution for RNA viruses and its relationship to a diversity of viral infection and transmission modes. Mol Biol Evol 21: 1074-1080.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1074-1080
-
-
Hanada, K.1
Suzuki, Y.2
Gojobori, T.3
-
5
-
-
0036897701
-
Reduced positive selection in vector-borne RNA viruses
-
Woelk CH, Holmes EC, (2002) Reduced positive selection in vector-borne RNA viruses. Mol Biol Evol 19: 2333.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 2333
-
-
Woelk, C.H.1
Holmes, E.C.2
-
6
-
-
0033539645
-
Different population dynamics of human T cell lymphotropic virus type II in intravenous drug users compared with endemically infected tribes
-
Salemi M, Lewis M, Egan JF, Hall WW, Desmyter J, et al. (1999) Different population dynamics of human T cell lymphotropic virus type II in intravenous drug users compared with endemically infected tribes. Proc Natl Acad Sci U S A 96: 13253.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 13253
-
-
Salemi, M.1
Lewis, M.2
Egan, J.F.3
Hall, W.W.4
Desmyter, J.5
-
7
-
-
0037383742
-
Phylogeography of infectious haematopoietic necrosis virus in North America
-
Kurath G, Garver KA, Troyer RM, Emmenegger EJ, Einer-Jensen K, et al. (2003) Phylogeography of infectious haematopoietic necrosis virus in North America. J Gen Virol 84: 803.
-
(2003)
J Gen Virol
, vol.84
, pp. 803
-
-
Kurath, G.1
Garver, K.A.2
Troyer, R.M.3
Emmenegger, E.J.4
Einer-Jensen, K.5
-
8
-
-
79955417630
-
Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intra-host evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models
-
Edo-Matas D, Lemey P, Tom JA, Serna-Bolea CL, van den Blink AE, et al. (2010) Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intra-host evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models. Mol Biol Evol 28: 1605-1616.
-
(2010)
Mol Biol Evol
, vol.28
, pp. 1605-1616
-
-
Edo-Matas, D.1
Lemey, P.2
Tom, J.A.3
Serna-Bolea, C.L.4
van den Blink, A.E.5
-
9
-
-
77953297262
-
Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates
-
Volk SM, Chen R, Tsetsarkin KA, Adams AP, Garcia TI, et al. (2010) Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates. J Virol 84: 6497.
-
(2010)
J Virol
, vol.84
, pp. 6497
-
-
Volk, S.M.1
Chen, R.2
Tsetsarkin, K.A.3
Adams, A.P.4
Garcia, T.I.5
-
10
-
-
33644831181
-
Host range and emerging and reemerging infectious diseases
-
Woolhouse MEJ, Gowtage-Sequeria S, (2005) Host range and emerging and reemerging infectious diseases. Emerg Infect Dis 11: 1842-1847.
-
(2005)
Emerg Infect Dis
, vol.11
, pp. 1842-1847
-
-
Woolhouse, M.E.J.1
Gowtage-Sequeria, S.2
-
11
-
-
78651065709
-
Family level phylogenies reveal modes of macroevolution in RNA viruses
-
Kitchen A, Shackelton LA, Holmes EC, (2011) Family level phylogenies reveal modes of macroevolution in RNA viruses. Proc Natl Acad Sci U S A 108: 238-243.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 238-243
-
-
Kitchen, A.1
Shackelton, L.A.2
Holmes, E.C.3
-
12
-
-
33750930708
-
Avian influenza virus exhibits rapid evolutionary dynamics
-
Chen RB, Holmes EC, (2006) Avian influenza virus exhibits rapid evolutionary dynamics. Mol Biol Evol 23: 2336-2341.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 2336-2341
-
-
Chen, R.B.1
Holmes, E.C.2
-
13
-
-
33744498515
-
-
World Health Organization, Geneva, World Health Organization, Tech Rep Ser 931
-
World Health Organization (2005) WHO expert consultation on rabies: first report 5-8 Oct 2004 Geneva World Health Organization Tech Rep Ser 931 Available from: WHO, Geneva, Switzerland; ISSN 0512-3054.
-
(2005)
WHO Expert Consultation on Rabies: First Report 5-8 Oct 2004
-
-
-
14
-
-
80052090805
-
-
Reston, VA, U.S. Geological Survey Circular 1329, Available from: National Wildlife Health Center; Madison, WI; RA644.R3C665
-
Constantine DG, (2009) Bat rabies and other lyssavirus infections Reston, VA U.S. Geological Survey Circular 1329 Available from: National Wildlife Health Center; Madison, WI; RA644.R3C665.
-
(2009)
Bat Rabies and Other Lyssavirus Infections
-
-
Constantine, D.G.1
-
15
-
-
18144416501
-
Evolutionary timescale of rabies virus adaptation to North American bats inferred from the substitution rate of the nucleoprotein gene
-
Hughes GJ, Orciari LA, Rupprecht CE, (2005) Evolutionary timescale of rabies virus adaptation to North American bats inferred from the substitution rate of the nucleoprotein gene. J Gen Virol 86: 1467-1474.
-
(2005)
J Gen Virol
, vol.86
, pp. 1467-1474
-
-
Hughes, G.J.1
Orciari, L.A.2
Rupprecht, C.E.3
-
16
-
-
77955288981
-
Host phylogeny constrains cross-species emergence and establishment of rabies virus in bats
-
Streicker DG, Turmelle AS, Vonhof MJ, Kuzmin IV, McCracken GF, et al. (2010) Host phylogeny constrains cross-species emergence and establishment of rabies virus in bats. Science 329: 676-679.
-
(2010)
Science
, vol.329
, pp. 676-679
-
-
Streicker, D.G.1
Turmelle, A.S.2
Vonhof, M.J.3
Kuzmin, I.V.4
McCracken, G.F.5
-
17
-
-
33746492785
-
Bats: important reservoir hosts of emerging viruses
-
Calisher CH, Childs JE, Field HE, Holmes KV, Schountz T, (2006) Bats: important reservoir hosts of emerging viruses. Clin Microbiol Rev 19: 531-545.
-
(2006)
Clin Microbiol Rev
, vol.19
, pp. 531-545
-
-
Calisher, C.H.1
Childs, J.E.2
Field, H.E.3
Holmes, K.V.4
Schountz, T.5
-
18
-
-
0002140143
-
Effect of metabolic level of the host upon the pathogenesis of rabies in the bat
-
Sadler WW, Enright JB, (1959) Effect of metabolic level of the host upon the pathogenesis of rabies in the bat. J Infect Dis 106: 267-273.
-
(1959)
J Infect Dis
, vol.106
, pp. 267-273
-
-
Sadler, W.W.1
Enright, J.B.2
-
19
-
-
79960013613
-
Host and viral ecology determine bat rabies seasonality and maintenance
-
George DB, Webb CT, Farnsworth ML, O'Shea TJ, Bowen RA, et al. (2011) Host and viral ecology determine bat rabies seasonality and maintenance. Proc Natl Acad Sci U S A 108: 10208.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 10208
-
-
George, D.B.1
Webb, C.T.2
Farnsworth, M.L.3
O'Shea, T.J.4
Bowen, R.A.5
-
20
-
-
0035823192
-
Arbovirus infection increases with group size
-
Brown CR, Komar N, Quick SB, Sethi RA, Panella NA, et al. (2001) Arbovirus infection increases with group size. Proc R Soc Lond B 268: 1833-1840.
-
(2001)
Proc R Soc Lond B
, vol.268
, pp. 1833-1840
-
-
Brown, C.R.1
Komar, N.2
Quick, S.B.3
Sethi, R.A.4
Panella, N.A.5
-
21
-
-
78751682227
-
Animal migration and infectious disease risk
-
Altizer S, Bartel R, Han BA, (2011) Animal migration and infectious disease risk. Science 311: 296-302.
-
(2011)
Science
, vol.311
, pp. 296-302
-
-
Altizer, S.1
Bartel, R.2
Han, B.A.3
-
23
-
-
0242404116
-
Hierarchical phylogenetic models for analyzing multipartite sequence data
-
Suchard MA, Kitchen CMR, Sinsheimer JS, Weiss RE, (2003) Hierarchical phylogenetic models for analyzing multipartite sequence data. Syst Biol 52: 649-664.
-
(2003)
Syst Biol
, vol.52
, pp. 649-664
-
-
Suchard, M.A.1
Kitchen, C.M.R.2
Sinsheimer, J.S.3
Weiss, R.E.4
-
24
-
-
67649204837
-
The seven deadly sins of comparative analysis
-
Freckleton R, (2009) The seven deadly sins of comparative analysis. J Evol Biol 22: 1367-1375.
-
(2009)
J Evol Biol
, vol.22
, pp. 1367-1375
-
-
Freckleton, R.1
-
25
-
-
0038325772
-
Testing for phylogenetic signal in comparative data: Behavioral traits are more labile
-
Blomberg SP, Garland T, Ives AR, (2003) Testing for phylogenetic signal in comparative data: Behavioral traits are more labile. Evolution 57: 717-745.
-
(2003)
Evolution
, vol.57
, pp. 717-745
-
-
Blomberg, S.P.1
Garland, T.2
Ives, A.R.3
-
26
-
-
0027308854
-
Body size, metabolic rate, generation time, and the molecular clock
-
Martin AP, Palumbi SR, (1993) Body size, metabolic rate, generation time, and the molecular clock. Proc Natl Acad Sci U S A 90: 4087-4091.
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 4087-4091
-
-
Martin, A.P.1
Palumbi, S.R.2
-
27
-
-
0018116861
-
Latitudinal gradients in species diversity and their causes. I. A review of the hypotheses explaining the gradients
-
Rohde K, (1978) Latitudinal gradients in species diversity and their causes. I. A review of the hypotheses explaining the gradients. Biologisches Zentralblatt 97: 393-403.
-
(1978)
Biologisches Zentralblatt
, vol.97
, pp. 393-403
-
-
Rohde, K.1
-
28
-
-
1542430731
-
Physiological Ecology and Energetics of Bats
-
In: Kunz TH, Fenton MB, editors, Chicago, The University of Chicago Press
-
Speakman JR, Thomas DW, (2003) Physiological Ecology and Energetics of Bats. In: Kunz TH, Fenton MB, editors. Bat Ecology Chicago The University of Chicago Press pp. 430-490.
-
(2003)
Bat Ecology
, pp. 430-490
-
-
Speakman, J.R.1
Thomas, D.W.2
-
29
-
-
77954468488
-
Thermoregulatory variation among populations of bats along a latitudinal gradient
-
Dunbar MB, Brigham RM, (2010) Thermoregulatory variation among populations of bats along a latitudinal gradient. Comp Physiol B 180: 1-9.
-
(2010)
Comp Physiol B
, vol.180
, pp. 1-9
-
-
Dunbar, M.B.1
Brigham, R.M.2
-
30
-
-
0001749998
-
The behavior of temperate cave bats in a subtropical environment
-
McNab BK, (1974) The behavior of temperate cave bats in a subtropical environment. Ecology 55: 943-958.
-
(1974)
Ecology
, vol.55
, pp. 943-958
-
-
McNab, B.K.1
-
31
-
-
0034990080
-
Genetic diversity in RNA virus quasispecies is controlled by host-virus interactions
-
Schneider WL, Roossinck MJ, (2001) Genetic diversity in RNA virus quasispecies is controlled by host-virus interactions. J Virol 75: 6566-6571.
-
(2001)
J Virol
, vol.75
, pp. 6566-6571
-
-
Schneider, W.L.1
Roossinck, M.J.2
-
33
-
-
33947288482
-
Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography
-
Mittelbach GG, Schemske DW, Cornell HV, Allen AP, Brown JM, et al. (2007) Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography. Ecol Lett 10: 315-331.
-
(2007)
Ecol Lett
, vol.10
, pp. 315-331
-
-
Mittelbach, G.G.1
Schemske, D.W.2
Cornell, H.V.3
Allen, A.P.4
Brown, J.M.5
-
34
-
-
23044492863
-
Ecology of Bat Migration
-
In: Kunz TH, editors, Chicago, University of Chicago Press
-
Fleming TH, Eby P, (2003) Ecology of Bat Migration. In: Kunz TH, editors. Bat Ecology Chicago University of Chicago Press pp. 156-208.
-
(2003)
Bat Ecology
, pp. 156-208
-
-
Fleming, T.H.1
Eby, P.2
-
35
-
-
80051711183
-
Hibernation and Torpor in Tropical and Subtropical Bats in Relation to Energetics, Extinctions, and the Evolution of Endothermy
-
Geiser F, Stawski C, (2011) Hibernation and Torpor in Tropical and Subtropical Bats in Relation to Energetics, Extinctions, and the Evolution of Endothermy. Integr Comp Biol 51: 337-348.
-
(2011)
Integr Comp Biol
, vol.51
, pp. 337-348
-
-
Geiser, F.1
Stawski, C.2
-
36
-
-
33845491269
-
Activity following arousal in winter in North American vespertilionid bats
-
Boyles JG, Dunbar MB, Whitaker JO, (2006) Activity following arousal in winter in North American vespertilionid bats. Mamm Rev 36: 267-280.
-
(2006)
Mamm Rev
, vol.36
, pp. 267-280
-
-
Boyles, J.G.1
Dunbar, M.B.2
Whitaker, J.O.3
-
37
-
-
0029768948
-
The NCEP/NCAR 40-year reanalysis project
-
Kalnay E, Kanamitsu M, Kistler R, Collins W, Deaven D, et al. (1996) The NCEP/NCAR 40-year reanalysis project. Bull Amer Meteor Soc 77: 437-471.
-
(1996)
Bull Amer Meteor Soc
, vol.77
, pp. 437-471
-
-
Kalnay, E.1
Kanamitsu, M.2
Kistler, R.3
Collins, W.4
Deaven, D.5
-
39
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
40
-
-
45849154165
-
jModelTest: Phylogenetic model averaging
-
Posada D, (2008) jModelTest: Phylogenetic model averaging. Mol Biol and Evol 25: 1253-1256.
-
(2008)
Mol Biol and Evol
, vol.25
, pp. 1253-1256
-
-
Posada, D.1
-
41
-
-
84892148784
-
glmulti: GLM model selection and multimodel inference made easy, R package version 1.0.3
-
Available:. Accessed 29 November 2011
-
Calcagno V, (2011) glmulti: GLM model selection and multimodel inference made easy, R package version 1.0.3. Available: http://CRAN.R-project.org/package=glmulti. Accessed 29 November 2011.
-
(2011)
-
-
Calcagno, V.1
-
42
-
-
5344244656
-
-
R Development Core Team, R Foundation for Statistical Computing (Vienna, Austria). Available:. Accessed 17 January 2012
-
R Development Core Team (2011) R: A language and environment for statistical computing, version 2.14.1. R Foundation for Statistical Computing (Vienna, Austria). Available: http://www.R-project.org. Accessed 17 January 2012.
-
(2011)
R: A language and environment for statistical computing, version 2.14.1
-
-
-
43
-
-
84864697738
-
caper: Comparative Analysis of Phylogenetics and Evolution in R, R package version 0.4
-
Available:. Accessed 25 October 2011
-
Orme CDL, Freckleton RP, Thomas G, Petzoldt T, Fritz SA, et al. (2011) caper: Comparative Analysis of Phylogenetics and Evolution in R, R package version 0.4. Available: http://CRAN.R-project.org/package=caper. Accessed 25 October 2011.
-
(2011)
-
-
Orme, C.D.L.1
Freckleton, R.P.2
Thomas, G.3
Petzoldt, T.4
Fritz, S.A.5
-
44
-
-
77953882250
-
Picante: R tools for integrating phylogenies and ecology
-
Kembel SW, Cowan PD, Helmus MR, Cornwell WK, Morlon H, et al. (2010) Picante: R tools for integrating phylogenies and ecology. Bioinformatics 26: 1463-1464.
-
(2010)
Bioinformatics
, vol.26
, pp. 1463-1464
-
-
Kembel, S.W.1
Cowan, P.D.2
Helmus, M.R.3
Cornwell, W.K.4
Morlon, H.5
|