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Volumn 35, Issue 2, 2012, Pages 530-537

Combination of meta-analysis and graph clustering to identify prognostic markers of ESCC

Author keywords

Esophageal squamous cell carcinoma; Graph clustering; Meta analysis

Indexed keywords

CALGRANULIN B; CYTOCHROME P450 2C9; STROMAL CELL DERIVED FACTOR 1;

EID: 84863671316     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/S1415-47572012000300021     Document Type: Article
Times cited : (8)

References (46)
  • 1
    • 0029842889 scopus 로고    scopus 로고
    • Esophagin cDNA cloning and characterization: A tissue-specific member of the small proline-rich protein family that is not expressed in esophageal tumors
    • Abraham JM, Wang S, Suzuki H, Jiang HY, Rosenblum-Vos LS, Yin J and Meltzer SJ (1996) Esophagin cDNA cloning and characterization: A tissue-specific member of the small proline-rich protein family that is not expressed in esophageal tumors. Cell Growth Diff 7:855-860.
    • (1996) Cell Growth Diff , vol.7 , pp. 855-860
    • Abraham, J.M.1    Wang, S.2    Suzuki, H.3    Jiang, H.Y.4    Rosenblum-Vos, L.S.5    Yin, J.6    Meltzer, S.J.7
  • 2
    • 0004183876 scopus 로고
    • cDNA cloning and sequence of MAL, a hydrophobic protein associated with human T-cell differentiation
    • Alonso MA and Weissman SM (1987) cDNA cloning and sequence of MAL, a hydrophobic protein associated with human T-cell differentiation. Proc Natl Acad Sci USA 84:1997-2001.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 1997-2001
    • Alonso, M.A.1    Weissman, S.M.2
  • 3
    • 33744805096 scopus 로고    scopus 로고
    • Development and implementation of an algorithm for detection of protein complexes in large interaction networks
    • Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K and Kanaya S (2006) Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinformatics 7:e207.
    • (2006) BMC Bioinformatics , vol.7
    • Altaf-Ul-Amin, M.1    Shinbo, Y.2    Mihara, K.3    Kurokawa, K.4    Kanaya, S.5
  • 4
    • 31544478789 scopus 로고    scopus 로고
    • Activation of Vav/Rho GTPase signaling by CXCL12 controls membrane-type matrix metalloproteinase-dependent melanoma cell invasion
    • Bartolomé RA, Molina-Ortiz I, Samaniego R, Sánchez-Mateos P, Bustelo XR and Teixidó J (2006) Activation of Vav/Rho GTPase signaling by CXCL12 controls membrane-type matrix metalloproteinase-dependent melanoma cell invasion. Cancer Res 66:248-258.
    • (2006) Cancer Res , vol.66 , pp. 248-258
    • Bartolomé, R.A.1    Molina-Ortiz, I.2    Samaniego, R.3    Sánchez-Mateos, P.4    Bustelo, X.R.5    Teixidó, J.6
  • 5
    • 12344269924 scopus 로고    scopus 로고
    • GO: TermFinder-Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    • Boyle EI, Weng S, Gollub J, Jin H, Botstein D, Cherry JM and Sherlock G (2004) GO: TermFinder-Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20:3710-3715.
    • (2004) Bioinformatics , vol.20 , pp. 3710-3715
    • Boyle, E.I.1    Weng, S.2    Gollub, J.3    Jin, H.4    Botstein, D.5    Cherry, J.M.6    Sherlock, G.7
  • 8
    • 70349641918 scopus 로고    scopus 로고
    • Beclin-1 expression is a predictor of clinical outcome in patients with esophageal squamous cell carcinoma and correlated to Hypoxia-Inducible Factor (HIF)-1A expression
    • Chen Y, Lu Y, Lu C and Zhang L (2009) Beclin-1 expression is a predictor of clinical outcome in patients with esophageal squamous cell carcinoma and correlated to Hypoxia-Inducible Factor (HIF)-1A expression. Pathol Oncol Res 15:487-493.
    • (2009) Pathol Oncol Res , vol.15 , pp. 487-493
    • Chen, Y.1    Lu, Y.2    Lu, C.3    Zhang, L.4
  • 9
    • 0013798978 scopus 로고
    • The average Spearman rank correlation when ties are present: A correction
    • Cureton EE (1965) The average Spearman rank correlation when ties are present: A correction. Psychometrika 30:377.
    • (1965) Psychometrika , vol.30 , pp. 377
    • Cureton, E.E.1
  • 12
    • 78650676139 scopus 로고    scopus 로고
    • Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach
    • Fukushima A, Kusano M, Redestig H, AritaMand Saito K (2011) Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach. BMCSyst Biol 5:e1.
    • (2011) BMCSyst Biol , vol.5
    • Fukushima, A.1    Kusano, M.2    Redestig, H.3    Arita, M.4    Saito, K.5
  • 14
    • 33751006151 scopus 로고    scopus 로고
    • RankProd: A bioconductor package for detecting differentially expressed genes in meta-analysis
    • Hong F, Breitling R, McEntee CW, Wittner BS, Nemhauser JL and Chory J (2006) RankProd: A bioconductor package for detecting differentially expressed genes in meta-analysis. Bioinformatics 22:2825-2827.
    • (2006) Bioinformatics , vol.22 , pp. 2825-2827
    • Hong, F.1    Breitling, R.2    McEntee, C.W.3    Wittner, B.S.4    Nemhauser, J.L.5    Chory, J.6
  • 15
    • 77957924361 scopus 로고    scopus 로고
    • Genome wide analysis of DNA copy number neutral loss of heterozygosity (CNNLOH) and its relation to gene expression in esophageal squamous cell carcinoma
    • Hu N, Clifford RJ, Yang HH, Wang C, Goldstein AM, Ding T, Taylor PR and Lee MP (2010) Genome wide analysis of DNA copy number neutral loss of heterozygosity (CNNLOH) and its relation to gene expression in esophageal squamous cell carcinoma. BMC Genomics 11:e576.
    • (2010) BMC Genomics , vol.11
    • Hu, N.1    Clifford, R.J.2    Yang, H.H.3    Wang, C.4    Goldstein, A.M.5    Ding, T.6    Taylor, P.R.7    Lee, M.P.8
  • 16
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT and Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Prot 4:44-57.
    • (2009) Nat Prot , vol.4 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 18
    • 0037083622 scopus 로고    scopus 로고
    • Overexpression of caveolin-1 in esophageal squamous cell carcinoma correlates with lymph node metastasis and pathologic stage
    • Kato K, Hida Y, Miyamoto M, Hashida H, Shinohara T, Itoh T, Okushiba S, Kondo S and Katoh H (2002) Overexpression of caveolin-1 in esophageal squamous cell carcinoma correlates with lymph node metastasis and pathologic stage. Cancer 94:929-933.
    • (2002) Cancer , vol.94 , pp. 929-933
    • Kato, K.1    Hida, Y.2    Miyamoto, M.3    Hashida, H.4    Shinohara, T.5    Itoh, T.6    Okushiba, S.7    Kondo, S.8    Katoh, H.9
  • 19
    • 3142706730 scopus 로고    scopus 로고
    • Differential gene expression between squamous cell carcinoma of esophagus and its normal epithelium; altered pattern of mal, akr1c2, and rab11a expression
    • Kazemi-Noureini S, Colonna-Romano S, Ziaee AA, Malboobi MA, Yazdanbod M, Setayeshgar P and Maresca B (2004) Differential gene expression between squamous cell carcinoma of esophagus and its normal epithelium; altered pattern of mal, akr1c2, and rab11a expression. World J Gastroenterol 10:1716-1721.
    • (2004) World J Gastroenterol , vol.10 , pp. 1716-1721
    • Kazemi-Noureini, S.1    Colonna-Romano, S.2    Ziaee, A.A.3    Malboobi, M.A.4    Yazdanbod, M.5    Setayeshgar, P.6    Maresca, B.7
  • 20
    • 2342433557 scopus 로고    scopus 로고
    • Loss of myeloid-related proteins 8 and myeloidrelated proteins 14 expression in human esophageal squamous cell carcinoma correlates with poor differentiation
    • Kong JP, Ding F, Zhou CN, Wang XQ, Miao XP, Wu M and Liu ZH (2004) Loss of myeloid-related proteins 8 and myeloidrelated proteins 14 expression in human esophageal squamous cell carcinoma correlates with poor differentiation. World J Gastroenterol 10:1093-1097.
    • (2004) World J Gastroenterol , vol.10 , pp. 1093-1097
    • Kong, J.P.1    Ding, F.2    Zhou, C.N.3    Wang, X.Q.4    Miao, X.P.5    Wu, M.6    Liu, Z.H.7
  • 21
    • 2442585463 scopus 로고    scopus 로고
    • Molecular aspects of esophageal squamous cell carcinoma carcinogenesis
    • Lehrbach DM, Nita ME and Cecconello I (2003) Molecular aspects of esophageal squamous cell carcinoma carcinogenesis. Arq Gastroenterol 40:256-261.
    • (2003) Arq Gastroenterol , vol.40 , pp. 256-261
    • Lehrbach, D.M.1    Nita, M.E.2    Cecconello, I.3
  • 22
    • 33745817066 scopus 로고    scopus 로고
    • Functional studies of a novel oncogene TGM3 in human esophageal squamous cell carcinoma
    • Liu W, Yu ZC, Cao WF, Ding F and Liu ZH (2006) Functional studies of a novel oncogene TGM3 in human esophageal squamous cell carcinoma. World J Gastroenterol 12:3929-3932.
    • (2006) World J Gastroenterol , vol.12 , pp. 3929-3932
    • Liu, W.1    Yu, Z.C.2    Cao, W.F.3    Ding, F.4    Liu, Z.H.5
  • 23
    • 79956204168 scopus 로고    scopus 로고
    • The expression of CXCR4 and its relationship with matrix metalloproteina-se9/vascular endothelial growth factor in esophageal squamous cell cancer
    • Lu C, Ji Y, Ge D, Guo J and Ding J (2010) The expression of CXCR4 and its relationship with matrix metalloproteina-se9/vascular endothelial growth factor in esophageal squamous cell cancer. Dis Esophagus 24:283-290.
    • (2010) Dis Esophagus , vol.24 , pp. 283-290
    • Lu, C.1    Ji, Y.2    Ge, D.3    Guo, J.4    Ding, J.5
  • 24
    • 1442351994 scopus 로고    scopus 로고
    • Discovery of Ca2+-relevant and differentiation-associated genes downregulated in esophageal squamous cell carcinoma using cDNA microarray
    • Luo A, Kong J, Hu G, Liew CC, Xiong M, Wang X, Ji J, Wang T, Zhi H, Wu M, et al. (2004) Discovery of Ca2+-relevant and differentiation-associated genes downregulated in esophageal squamous cell carcinoma using cDNA microarray. Oncogene 23:1291-1299.
    • (2004) Oncogene , vol.23 , pp. 1291-1299
    • Luo, A.1    Kong, J.2    Hu, G.3    Liew, C.C.4    Xiong, M.5    Wang, X.6    Ji, J.7    Wang, T.8    Zhi, H.9    Wu, M.10
  • 30
    • 79955495946 scopus 로고    scopus 로고
    • Global gene expression profiling and validation in esophageal squamous cell carcinoma and its association with clinical phenotypes
    • Su H, Hu N, Yang HH, Wang C, Takikita M, Wang QH, Giffen C, Clifford R, Hewitt SM, Shou JZ, et al. (2011) Global gene expression profiling and validation in esophageal squamous cell carcinoma and its association with clinical phenotypes. Clin Cancer Res 17:2955-2966.
    • (2011) Clin Cancer Res , vol.17 , pp. 2955-2966
    • Su, H.1    Hu, N.2    Yang, H.H.3    Wang, C.4    Takikita, M.5    Wang, Q.H.6    Giffen, C.7    Clifford, R.8    Hewitt, S.M.9    Shou, J.Z.10
  • 31
    • 78651364770 scopus 로고    scopus 로고
    • Low expression of claudin-4 is associated with poor prognosis in esophageal squamous cell carcinoma
    • Sung CO, Han SY and Kim SH (2011) Low expression of claudin-4 is associated with poor prognosis in esophageal squamous cell carcinoma. Ann Surg Oncol 18:273-281.
    • (2011) Ann Surg Oncol , vol.18 , pp. 273-281
    • Sung, C.O.1    Han, S.Y.2    Kim, S.H.3
  • 34
    • 34047236041 scopus 로고    scopus 로고
    • Assessment of clinical outcome in patients with esophageal squamous cell carcinoma using TNM classification score and molecular biological classification
    • Takeno S, Noguchi T, Takahashi Y, Fumoto S, Shibata T and Kawahara K (2007) Assessment of clinical outcome in patients with esophageal squamous cell carcinoma using TNM classification score and molecular biological classification. Ann Surg Oncol 14:1431-1438.
    • (2007) Ann Surg Oncol , vol.14 , pp. 1431-1438
    • Takeno, S.1    Noguchi, T.2    Takahashi, Y.3    Fumoto, S.4    Shibata, T.5    Kawahara, K.6
  • 35
    • 70349506738 scopus 로고    scopus 로고
    • Expression of CXCL12/CXCR4 and its correlation to prognosis in esophageal squamous cell carcinoma
    • Wang DF, Lou N, Zeng CG, Zhang X and Chen FJ (2009) Expression of CXCL12/CXCR4 and its correlation to prognosis in esophageal squamous cell carcinoma. Ai Zheng 28:154-158.
    • (2009) Ai Zheng , vol.28 , pp. 154-158
    • Wang, D.F.1    Lou, N.2    Zeng, C.G.3    Zhang, X.4    Chen, F.J.5
  • 37
    • 79960189577 scopus 로고    scopus 로고
    • Expression of cysteine-rich 61 is correlated with poor prognosis in patients with esophageal squamous cell carcinoma
    • Xie J, Xu L, Wu Z, Li L, Xu X, Wu J, Huang Q and Li E (2011) Expression of cysteine-rich 61 is correlated with poor prognosis in patients with esophageal squamous cell carcinoma. Eur J Surg Oncol 37:669-674.
    • (2011) Eur J Surg Oncol , vol.37 , pp. 669-674
    • Xie, J.1    Xu, L.2    Wu, Z.3    Li, L.4    Xu, X.5    Wu, J.6    Huang, Q.7    Li, E.8
  • 38
  • 39
    • 40949137792 scopus 로고    scopus 로고
    • Sonic hedgehog signaling promotes motility and invasiveness of gastric cancer cells through TGF-beta-mediated activation of the ALK5-Smad 3 pathway
    • Yoo YA, Kang MH, Kim JS and Oh SC (2008) Sonic hedgehog signaling promotes motility and invasiveness of gastric cancer cells through TGF-beta-mediated activation of the ALK5-Smad 3 pathway. Carcinogenesis 29:480-490.
    • (2008) Carcinogenesis , vol.29 , pp. 480-490
    • Yoo, Y.A.1    Kang, M.H.2    Kim, J.S.3    Oh, S.C.4
  • 40
    • 84863666013 scopus 로고    scopus 로고
    • Expression of phosphatase regenerating Liver-1 in esophageal squamous cell carcinoma associated with metastasis
    • Yuqiong L, Xi L, Ke G, Jun-Yi L and Huixiang L (2011) Expression of phosphatase regenerating Liver-1 in esophageal squamous cell carcinoma associated with metastasis. ISRN Pathology 2011:5402-5408.
    • (2011) ISRN Pathology , vol.2011 , pp. 5402-5408
    • Yuqiong, L.1    Xi, L.2    Ke, G.3    Jun-Yi, L.4    Huixiang, L.5
  • 41
    • 27944455701 scopus 로고    scopus 로고
    • The chemokine stromal cell derived factor-1 (CXCL12) promotes glioma invasiveness through MT2-matrix metalloproteinase
    • Zhang J, Sarkar S and Yong VW (2005a) The chemokine stromal cell derived factor-1 (CXCL12) promotes glioma invasiveness through MT2-matrix metalloproteinase. Carcinogenesis 26:2069-2077.
    • (2005) Carcinogenesis , vol.26 , pp. 2069-2077
    • Zhang, J.1    Sarkar, S.2    Yong, V.W.3
  • 42
    • 18944379855 scopus 로고    scopus 로고
    • Transglutaminase 3 expression in C57BL/6J mouse embryo epidermis and the correlation with its differentiation
    • Zhang J, Hui Ying Z, Fang D, Ai Ping L and Liu ZH (2005b) Transglutaminase 3 expression in C57BL/6J mouse embryo epidermis and the correlation with its differentiation. Cell Res 15:105-110.
    • (2005) Cell Res , vol.15 , pp. 105-110
    • Zhang, J.1    Hui Ying, Z.2    Fang, D.3    Ai Ping, L.4    Liu, Z.H.5
  • 43
    • 36849064807 scopus 로고    scopus 로고
    • Exogenous expression of Esophagin/SPRR3 attenuates the tumorigenicity of esophageal squamous cell carcinoma cells via promoting apoptosis
    • Zhang Y, Feng YB, Shen XM, Chen BS, Du XL, Luo ML, Cai Y, Han YL, Xu X, Zhan QM, et al. (2008) Exogenous expression of Esophagin/SPRR3 attenuates the tumorigenicity of esophageal squamous cell carcinoma cells via promoting apoptosis. Int J Cancer 122:260-266.
    • (2008) Int J Cancer , vol.122 , pp. 260-266
    • Zhang, Y.1    Feng, Y.B.2    Shen, X.M.3    Chen, B.S.4    Du, X.L.5    Luo, M.L.6    Cai, Y.7    Han, Y.L.8    Xu, X.9    Zhan, Q.M.10
  • 44
    • 0038167016 scopus 로고    scopus 로고
    • The deregulation of arachidonic acid metabolismrelated genes in human esophageal squamous cell carcinoma
    • Zhi H, Zhang J, Hu G, Lu J, Wang X, Zhou C, Wu M and Liu Z (2003) The deregulation of arachidonic acid metabolismrelated genes in human esophageal squamous cell carcinoma. Int J Cancer 106:327-333.
    • (2003) Int J Cancer , vol.106 , pp. 327-333
    • Zhi, H.1    Zhang, J.2    Hu, G.3    Lu, J.4    Wang, X.5    Zhou, C.6    Wu, M.7    Liu, Z.8
  • 45
    • 25844517518 scopus 로고    scopus 로고
    • Proteomic analysis of global alteration of protein expression in squamous cell carcinoma of the esophagus
    • Zhou G, Li H, Gong Y, Zhao Y, Cheng J and Lee P (2005) Proteomic analysis of global alteration of protein expression in squamous cell carcinoma of the esophagus. Proteomics 5:3814-3821.
    • (2005) Proteomics , vol.5 , pp. 3814-3821
    • Zhou, G.1    Li, H.2    Gong, Y.3    Zhao, Y.4    Cheng, J.5    Lee, P.6


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