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Volumn 5, Issue , 2012, Pages

NgLOC: Software and web server for predicting protein subcellular localization in prokaryotes and eukaryotes

Author keywords

Bayesian method; Machine learning algorithm; N gram based approach; ngLOC; Protein sequence classification; Protein subcellular localization prediction

Indexed keywords

ANIMALIA; BACTERIA (MICROORGANISMS); EUKARYOTA; NEGIBACTERIA; POSIBACTERIA; PROKARYOTA;

EID: 84863601391     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-5-351     Document Type: Article
Times cited : (41)

References (10)
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    • Prediction of subcellular locations of proteins: where to proceed? Imai K, Nakai K, Proteomics 2010 10 3970 3983 10.1002/pmic.201000274 21080490
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  • 2
    • 60349123328 scopus 로고    scopus 로고
    • Protein subcellular localization prediction using artificial intelligence technology
    • 10.1007/978-1-59745-398-1-27
    • Protein subcellular localization prediction using artificial intelligence technology. Nair R, Rost B, Methods in molecular biology (Clifton, N.J.) 2008 484 435 63 10.1007/978-1-59745-398-1-27
    • (2008) Methods in Molecular Biology (Clifton, N.J.) , vol.484 , pp. 435-463
    • Nair, R.1    Rost, B.2
  • 3
    • 34548832558 scopus 로고    scopus 로고
    • NgLOC: An n-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes
    • 10.1186/gb-2007-8-5-r68 17472741
    • ngLOC: an n-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes. King BR, Guda C, Genome Biol 2007 8 68 10.1186/gb-2007-8-5-r68 17472741
    • (2007) Genome Biol , vol.8 , pp. 1868
    • King, B.R.1    Guda, C.2
  • 6
    • 70449428562 scopus 로고    scopus 로고
    • SherLoc2: A high-accuracy hybrid method for predicting subcellular localization of proteins
    • 10.1021/pr900665y 19764776
    • SherLoc2: a high-accuracy hybrid method for predicting subcellular localization of proteins. Briesemeister S, Blum T, Brady S, Lam Y, Kohlbacher O, Shatkay H, Journal of proteome research 2009 8 5363 6 10.1021/pr900665y 19764776
    • (2009) Journal of Proteome Research , vol.8 , pp. 5363-5366
    • Briesemeister, S.1    Blum, T.2    Brady, S.3    Lam, Y.4    Kohlbacher, O.5    Shatkay, H.6
  • 7
    • 84859263222 scopus 로고    scopus 로고
    • WegoLoc: Accurate prediction of protein subcellular localization using weighted Gene Ontology terms
    • 10.1093/bioinformatics/bts062 22296788
    • WegoLoc: accurate prediction of protein subcellular localization using weighted Gene Ontology terms. Chi S-M, Nam D, Bioinformatics 2012 28 1028 1030 10.1093/bioinformatics/bts062 22296788
    • (2012) Bioinformatics , vol.28 , pp. 1028-1030
    • Chi, S.-M.1    Nam, D.2
  • 8
    • 33646861792 scopus 로고    scopus 로고
    • MultiLoc: Prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition
    • 10.1093/bioinformatics/btl002 16428265
    • MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition. Hoglund A, Donnes P, Blum T, Adolph HW, Kohlbacher O, Bioinformatics 2006 22 1158 65 10.1093/bioinformatics/btl002 16428265
    • (2006) Bioinformatics , vol.22 , pp. 1158-1165
    • Hoglund, A.1    Donnes, P.2    Blum, T.3    Adolph, H.W.4    Kohlbacher, O.5
  • 9
    • 84871725897 scopus 로고    scopus 로고
    • Towards Cataloguing the Subcellular Proteomes of Eukaryotic Organisms
    • iConcept Press Ltd, Zhao Z
    • Towards Cataloguing the Subcellular Proteomes of Eukaryotic Organisms. Guda C, Sequence and Genome Analysis: Methods and Applications iConcept Press Ltd, Zhao Z, 2010 259 269 http://www.iconceptpress.com/web/site/aboutUs. contactUs.php
    • (2010) Sequence and Genome Analysis: Methods and Applications , pp. 259-269
    • Guda, C.1
  • 10
    • 78650997356 scopus 로고    scopus 로고
    • N-gram analysis of 970 microbial organisms reveals presence of biological language models
    • 10.1186/1471-2105-12-12
    • N-gram analysis of 970 microbial organisms reveals presence of biological language models. Osmanbeyoglu HU, Ganapathiraju MK, BMC Bioinforma 2011 12 12 10.1186/1471-2105-12-12
    • (2011) BMC Bioinforma , vol.12 , pp. 12
    • Osmanbeyoglu, H.U.1    Ganapathiraju, M.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.