-
1
-
-
76749134307
-
Many families of C. elegans microRNAs are not essential for development or viability
-
Alvarez-Saavedra E, Horvitz HR. 2010. Many families of C. elegans microRNAs are not essential for development or viability. Curr Biol 20: 367-373.
-
(2010)
Curr Biol
, vol.20
, pp. 367-373
-
-
Alvarez-Saavedra, E.1
Horvitz, H.R.2
-
2
-
-
49949116902
-
The impact of microRNAs on protein output
-
BaekD, Villén J, Shin C, Camargo FD, Gygi SP, Bartel DP. 2008. The impact of microRNAs on protein output. Nature 455: 64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villén, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
-
3
-
-
23944514849
-
Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation
-
DOI 10.1016/j.cell.2005.07.031, PII S0092867405008019
-
Bagga S, Bracht J, Hunter S, Massirer K, Holtz J, Eachus R, Pasquinelli AE. 2005. Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell 122: 553-563. (Pubitemid 41191154)
-
(2005)
Cell
, vol.122
, Issue.4
, pp. 553-563
-
-
Bagga, S.1
Bracht, J.2
Hunter, S.3
Massirer, K.4
Holtz, J.5
Eachus, R.6
Pasquinelli, A.E.7
-
4
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
5
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel DP. 2009. MicroRNAs: Target recognition and regulatory functions. Cell 136: 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
6
-
-
37649021046
-
Identification of human microRNA targets from isolated argonaute protein complexes
-
Beitzinger M, Peters L, Zhu JY, Kremmer E, Meister G. 2007. Identification of human microRNA targets from isolated argonaute protein complexes. RNA Biol 4: 76-84.
-
(2007)
RNA Biol
, vol.4
, pp. 76-84
-
-
Beitzinger, M.1
Peters, L.2
Zhu, J.Y.3
Kremmer, E.4
Meister, G.5
-
7
-
-
0016063911
-
The genetics of Caenorhabditis elegans
-
Brenner S. 1974. The genetics of Caenorhabditis elegans. Genetics 77: 71-94.
-
(1974)
Genetics
, vol.77
, pp. 71-94
-
-
Brenner, S.1
-
8
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
Carthew RW, Sontheimer EJ. 2009. Origins and mechanisms of miRNAs and siRNAs. Cell 136: 642-655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
9
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
-
Chi SW, Zang JB, Mele A, Darnell RB. 2009. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 460: 479-486.
-
(2009)
Nature
, vol.460
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
10
-
-
70349320158
-
Causes and consequences of microRNA dysregulation in cancer
-
Croce CM. 2009. Causes and consequences of microRNA dysregulation in cancer. Nat Rev Genet 10: 704-714.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 704-714
-
-
Croce, C.M.1
-
11
-
-
34447521718
-
Isolation of microRNA targets by miRNP immunopurification
-
DOI 10.1261/rna.563707
-
Easow G, Teleman AA, Cohen SM. 2007. Isolation of microRNA targets by miRNP immunopurification. RNA 13: 1198-1204. (Pubitemid 47080465)
-
(2007)
RNA
, vol.13
, Issue.8
, pp. 1198-1204
-
-
Easow, G.1
Teleman, A.A.2
Cohen, S.M.3
-
12
-
-
38349169664
-
Mechanisms of posttranscriptional regulation by microRNAs: Are the answers in sight?
-
Filipowicz W, Bhattacharyya SN, Sonenberg N. 2008. Mechanisms of posttranscriptional regulation by microRNAs: Are the answers in sight? Nat Rev Genet 9: 102-114.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
13
-
-
1342288026
-
Affy - Analysis of Affymetrix GeneChip data at the probe level
-
DOI 10.1093/bioinformatics/btg405
-
Gautier L, Cope L, Bolstad BM, Irizarry RA. 2004. affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20: 307-315. (Pubitemid 38262761)
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 307-315
-
-
Gautier, L.1
Cope, L.2
Bolstad, B.M.3
Irizarry, R.A.4
-
14
-
-
19344365947
-
Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast
-
doi: 10.1371/journal.pbio.0020079
-
Gerber AP, Herschlag D, Brown PO. 2004. Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol 2: E79. doi: 10.1371/journal.pbio.0020079.
-
(2004)
PLoS Biol
, vol.2
-
-
Gerber, A.P.1
Herschlag, D.2
Brown, P.O.3
-
16
-
-
14644398601
-
The temporal patterning microRNA let-7 regulates several transcription factors at the larval to adult transition in C. elegans
-
DOI 10.1016/j.devcel.2004.12.019, PII S1534580705000122
-
Grosshans H, Johnson T, Reinert K, Gerstein M, Slack F. 2005. The temporal patterning microRNA regulates several transcription factors at the larval to adult transition in C. elegans. Dev Cell 8: 321-330. (Pubitemid 40309803)
-
(2005)
Developmental Cell
, vol.8
, Issue.3
, pp. 321-330
-
-
Grosshans, H.1
Johnson, T.2
Reinert, K.L.3
Gerstein, M.4
Slack, F.J.5
-
17
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo H, Ingolia NT, Weissman JS, Bartel DP. 2010. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466: 835-840.
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
18
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp A-C, Munschauer M, et al. 2010. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano, M.8
Jungkamp, A.-C.9
Munschauer, M.10
-
19
-
-
47749154078
-
Systematic identification of mRNAs recruited to Argonaute 2 by specific microRNAs and corresponding changes in transcript abundance
-
doi: 10.1371/journal.pone.0002126
-
Hendrickson DG, Hogan DJ, Herschlag D, Ferrell JE, Brown PO, Bähler J. 2008. Systematic identification of mRNAs recruited to Argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. PLoS ONE 3: e2126. doi: 10.1371/journal.pone.0002126.
-
(2008)
PLoS ONE
, vol.3
-
-
Hendrickson, D.G.1
Hogan, D.J.2
Herschlag, D.3
Ferrell, J.E.4
Brown, P.O.5
Bähler, J.6
-
20
-
-
72949115517
-
Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA
-
doi: 10.1371/journal.pbio.1000238
-
Hendrickson DG, Hogan DJ, McCullough HL, Myers JW, Herschlag D, Ferrell JE, Brown PO. 2009. Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA. PLoS Biol 7: e1000238. doi: 10.1371/journal.pbio.1000238.
-
(2009)
PLoS Biol
, vol.7
-
-
Hendrickson, D.G.1
Hogan, D.J.2
McCullough, H.L.3
Myers, J.W.4
Herschlag, D.5
Ferrell, J.E.6
Brown, P.O.7
-
21
-
-
78751477191
-
Gene silencing by microRNAs: Contributions of translational repression and mRNA decay
-
Huntzinger E, Izaurralde E. 2011. Gene silencing by microRNAs: Contributions of translational repression and mRNA decay. Nat Rev Genet 12: 99-110.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 99-110
-
-
Huntzinger, E.1
Izaurralde, E.2
-
22
-
-
37549014207
-
Argonaute proteins: Key players in RNA silencing
-
Hutvagner G, Simard MJ. 2008. Argonaute proteins: Key players in RNA silencing. Nat Rev Mol Cell Biol 9: 22-32.
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 22-32
-
-
Hutvagner, G.1
Simard, M.J.2
-
23
-
-
33749528151
-
miRNAs and apoptosis: RNAs to die for
-
DOI 10.1038/sj.onc.1209912, PII 1209912
-
Jovanovic M, Hengartner MO. 2006. miRNAs and apoptosis: RNAs to die for. Oncogene 25: 6176-6187. (Pubitemid 44527848)
-
(2006)
Oncogene
, vol.25
, Issue.46
, pp. 6176-6187
-
-
Jovanovic, M.1
Hengartner, M.O.2
-
24
-
-
77957665187
-
A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans
-
Jovanovic M, Reiter L, Picotti P, Lange V, Bogan E, Hurschler BA, Blenkiron C, Lehrbach NJ, Ding XC, Weiss M, et al. 2010. A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans. Nat Methods 7: 837-842.
-
(2010)
Nat Methods
, vol.7
, pp. 837-842
-
-
Jovanovic, M.1
Reiter, L.2
Picotti, P.3
Lange, V.4
Bogan, E.5
Hurschler, B.A.6
Blenkiron, C.7
Lehrbach, N.J.8
Ding, X.C.9
Weiss, M.10
-
25
-
-
83455219453
-
In vivo and transcriptome-wide identification of RNA binding protein target sites
-
Jungkamp A-C, Stoeckius M, Mecenas D, Grün D, Mastrobuoni G, Kempa S, Rajewsky N. 2011. In vivo and transcriptome-wide identification of RNA binding protein target sites. Mol Cell 44: 828-840.
-
(2011)
Mol Cell
, vol.44
, pp. 828-840
-
-
Jungkamp, A.-C.1
Stoeckius, M.2
Mecenas, D.3
Grün, D.4
Mastrobuoni, G.5
Kempa, S.6
Rajewsky, N.7
-
26
-
-
37648999735
-
A biochemical approach to identifying microRNA targets
-
Karginov FV, Conaco C, Xuan Z, Schmidt BH, Parker JS, Mandel G, Hannon GJ. 2007. A biochemical approach to identifying microRNA targets. Proc Natl Acad Sci 104: 19291-19296.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 19291-19296
-
-
Karginov, F.V.1
Conaco, C.2
Xuan, Z.3
Schmidt, B.H.4
Parker, J.S.5
Mandel, G.6
Hannon, G.J.7
-
27
-
-
67649663873
-
Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
-
doi: 10.1186/gb-2009-10-5-r54
-
Kato M, de Lencastre A, Pincus Z, Slack FJ. 2009. Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development. Genome Biol 10: R54. doi: 10.1186/gb-2009-10-5-r54.
-
(2009)
Genome Biol
, vol.10
-
-
Kato, M.1
De Lencastre, A.2
Pincus, Z.3
Slack, F.J.4
-
28
-
-
28444469246
-
Silencing of microRNAs in vivo with "antagomirs"
-
Krützfeldt J, Rajewsky N, Braich R, Rajeev KG, Tuschl T, Manoharan M, Stoffel M. 2005. Silencing of microRNAs in vivo with "antagomirs." Nature 438: 685-689.
-
(2005)
Nature
, vol.438
, pp. 685-689
-
-
Krützfeldt, J.1
Rajewsky, N.2
Braich, R.3
Rajeev, K.G.4
Tuschl, T.5
Manoharan, M.6
Stoffel, M.7
-
29
-
-
33644756532
-
A genome-wide map of conserved MicroRNA targets in C. elegans
-
DOI 10.1016/j.cub.2006.01.050, PII S0960982206010591
-
Lall S, Grun D, Krek A, Chen K,Wang Y, Dewey C, Sood P, Colombo T, Bray N, Macmenamin P. 2006. A genome-wide map of conserved microRNA targets in C. elegans. Curr Biol 16: 460-471. (Pubitemid 43343706)
-
(2006)
Current Biology
, vol.16
, Issue.5
, pp. 460-471
-
-
Lall, S.1
Grun, D.2
Krek, A.3
Chen, K.4
Wang, Y.-L.5
Dewey, C.N.6
Sood, P.7
Colombo, T.8
Bray, N.9
MacMenamin, P.10
Kao, H.-L.11
Gunsalus, K.C.12
Pachter, L.13
Piano, F.14
Rajewsky, N.15
-
30
-
-
57049148002
-
Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs
-
Landthaler M, Gaidatzis D, Rothballer A, Chen PY, Soll SJ, Dinic L, Ojo T, Hafner M, Zavolan M, Tuschl T. 2008. Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs. RNA 14: 2580-2596.
-
(2008)
RNA
, vol.14
, pp. 2580-2596
-
-
Landthaler, M.1
Gaidatzis, D.2
Rothballer, A.3
Chen, P.Y.4
Soll, S.J.5
Dinic, L.6
Ojo, T.7
Hafner, M.8
Zavolan, M.9
Tuschl, T.10
-
31
-
-
43049090085
-
Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring
-
Lange V, Malmström JA, Didion J, King NL, Johansson BP, Schäfer J, Rameseder J, Wong C-H, Deutsch EW, Brusniak M-Y, et al. 2008a. Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring. Mol Cell Proteomics 7: 1489-1500.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 1489-1500
-
-
Lange, V.1
Malmström, J.A.2
Didion, J.3
King, N.L.4
Johansson, B.P.5
Schäfer, J.6
Rameseder, J.7
Wong, C.-H.8
Deutsch, E.W.9
Brusniak, M.-Y.10
-
32
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: A tutorial
-
doi: 10.1038/msb.2008.61.
-
Lange V, Picotti P, Domon B, Aebersold R. 2008b. Selected reaction monitoring for quantitative proteomics: A tutorial. Mol Syst Biol 4: 222. doi: 10.1038/msb.2008.61.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
33
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
DOI 10.1016/0092-8674(93)90529-Y
-
Lee RC, Feinbaum RL, Ambros V. 1993. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854. (Pubitemid 24014542)
-
(1993)
Cell
, vol.75
, Issue.5
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
34
-
-
70349810911
-
LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans
-
Lehrbach NJ, Armisen J, Lightfoot HL, Murfitt KJ, Bugaut A, Balasubramanian S, Miska EA. 2009. LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans. Nat Struct Mol Biol 16: 1016-1020.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1016-1020
-
-
Lehrbach, N.J.1
Armisen, J.2
Lightfoot, H.L.3
Murfitt, K.J.4
Bugaut, A.5
Balasubramanian, S.6
Miska, E.A.7
-
35
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
DOI 10.1016/j.cell.2004.12.035, PII S0092867404012607
-
Lewis BP, Burge CB, Bartel DP. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20. (Pubitemid 40094598)
-
(2005)
Cell
, vol.120
, Issue.1
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
36
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of-target mRNAs
-
DOI 10.1038/nature03315
-
Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, Castle J, BartelDP, Linsley PS, Johnson JM. 2005. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773. (Pubitemid 40292988)
-
(2005)
Nature
, vol.433
, Issue.7027
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
Bartel, D.P.7
Linsley, P.S.8
Johnson, J.M.9
-
37
-
-
77954847055
-
The landscape of C. elegans 3′UTRs
-
Mangone M, Manoharan AP, Thierry-Mieg D, Thierry-Mieg J, Han T, Mackowiak S, Mis E, Zegar C, Gutwein MR, Khivansara V, et al. 2010. The landscape of C. elegans 3′UTRs. Science 329: 432-435.
-
(2010)
Science
, vol.329
, pp. 432-435
-
-
Mangone, M.1
Manoharan, A.P.2
Thierry-Mieg, D.3
Thierry-Mieg, J.4
Han, T.5
Mackowiak, S.6
Mis, E.7
Zegar, C.8
Gutwein, M.R.9
Khivansara, V.10
-
38
-
-
5344273958
-
Microarray analysis of microRNA expression in the developing mammalian brain
-
doi: 10.1186/gb-2004-5-9-r68
-
Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR. 2004. Microarray analysis of microRNA expression in the developing mammalian brain. Genome Biol 5: R68. doi: 10.1186/gb-2004-5-9-r68.
-
(2004)
Genome Biol
, vol.5
-
-
Miska, E.A.1
Alvarez-Saavedra, E.2
Townsend, M.3
Yoshii, A.4
Sestan, N.5
Rakic, P.6
Constantine-Paton, M.7
Horvitz, H.R.8
-
39
-
-
37749036293
-
Most Caenorhabditis elegans microRNAs are individually not essential for development or viability
-
doi: 10.1371/journal.pgen.0030215
-
Miska EA, Alvarez-Saavedra E, Abbott AL, Lau NC, Hellman AB, McGonagle SM, Bartel DP, Ambros VR, Horvitz HR. 2007. Most Caenorhabditis elegans microRNAs are individually not essential for development or viability. PLoS Genet 3: e215. doi: 10.1371/journal.pgen.0030215.
-
(2007)
PLoS Genet
, vol.3
-
-
Miska, E.A.1
Alvarez-Saavedra, E.2
Abbott, A.L.3
Lau, N.C.4
Hellman, A.B.5
McGonagle, S.M.6
Bartel, D.P.7
Ambros, V.R.8
Horvitz, H.R.9
-
40
-
-
78650512821
-
Loss of the RhoGAP SRGP-1 promotes the clearance of dead and injured cells in Caenorhabditis elegans
-
Neukomm LJ, Frei AP, Cabello J, Kinchen JM, Zaidel-Bar R, Ma Z, Haney LB, Hardin J, Ravichandran KS, Moreno S, et al. 2011. Loss of the RhoGAP SRGP-1 promotes the clearance of dead and injured cells in Caenorhabditis elegans. Nat Cell Biol 13: 79-86.
-
(2011)
Nat Cell Biol
, vol.13
, pp. 79-86
-
-
Neukomm, L.J.1
Frei, A.P.2
Cabello, J.3
Kinchen, J.M.4
Zaidel-Bar, R.5
Ma, Z.6
Haney, L.B.7
Hardin, J.8
Ravichandran, K.S.9
Moreno, S.10
-
41
-
-
73249140580
-
Experimental identification of microRNA targets
-
Ørom UA, Lund AH. 2010. Experimental identification of microRNA targets. Gene 451: 1-5.
-
(2010)
Gene
, vol.451
, pp. 1-5
-
-
Ørom, U.A.1
Lund, A.H.2
-
42
-
-
58149203235
-
The database of experimentally supported targets: A functional update of TarBase
-
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG. 2009. The database of experimentally supported targets: A functional update of TarBase. Nucleic Acids Res 37: D155-D158.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Papadopoulos, G.L.1
Reczko, M.2
Simossis, V.A.3
Sethupathy, P.4
Hatzigeorgiou, A.G.5
-
43
-
-
54049095667
-
A database of mass spectrometric assays for the yeast proteome
-
Picotti P, Lam H, Campbell D, Deutsch EW, Mirzaei H, Ranish J, Domon B, Aebersold R. 2008. A database of mass spectrometric assays for the yeast proteome. Nat Methods 5: 913-914.
-
(2008)
Nat Methods
, vol.5
, pp. 913-914
-
-
Picotti, P.1
Lam, H.2
Campbell, D.3
Deutsch, E.W.4
Mirzaei, H.5
Ranish, J.6
Domon, B.7
Aebersold, R.8
-
44
-
-
68749094119
-
Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
-
Picotti P, Bodenmiller B, Mueller LN, Domon B, Aebersold R. 2009. Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 138: 795-806.
-
(2009)
Cell
, vol.138
, pp. 795-806
-
-
Picotti, P.1
Bodenmiller, B.2
Mueller, L.N.3
Domon, B.4
Aebersold, R.5
-
45
-
-
74049131716
-
High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
-
Picotti P, Rinner O, Stallmach R, Dautel F, Farrah T, Domon B,Wenschuh H, Aebersold R. 2010. High-throughput generation of selected reaction-monitoring assays for proteins and proteomes. Nat Methods 7: 43-46.
-
(2010)
Nat Methods
, vol.7
, pp. 43-46
-
-
Picotti, P.1
Rinner, O.2
Stallmach, R.3
Dautel, F.4
Farrah, T.5
Domon, B.6
Wenschuh, H.7
Aebersold, R.8
-
46
-
-
0035099902
-
Creation of low-copy integrated transgenic lines in Caenorhabditis elegans
-
Praitis V, Casey E, Collar D, Austin J. 2001. Creation of low-copy integrated transgenic lines in Caenorhabditis elegans. Genetics 157: 1217-1226. (Pubitemid 32225014)
-
(2001)
Genetics
, vol.157
, Issue.3
, pp. 1217-1226
-
-
Praitis, V.1
Casey, E.2
Collar, D.3
Austin, J.4
-
48
-
-
79955595074
-
mProphet: Automated data processing and statistical validation for large-scale SRM experiments
-
Reiter L, Rinner O, Picotti P, Hüttenhain R, Beck M, Brusniak M-Y, Hengartner M O, Aebersold R. 2011. mProphet: Automated data processing and statistical validation for large-scale SRM experiments. Nat Methods 8: 430-435.
-
(2011)
Nat Methods
, vol.8
, pp. 430-435
-
-
Reiter, L.1
Rinner, O.2
Picotti, P.3
Hüttenhain, R.4
Beck, M.5
Brusniak, M.-Y.6
Hengartner, M.O.7
Aebersold, R.8
-
49
-
-
0004282618
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Riddle DL, Blumenthal T, Meyer BJ, Priess JR. 1997. C. elegans II. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1997)
C. elegans II
-
-
Riddle, D.L.1
Blumenthal, T.2
Meyer, B.J.3
Priess, J.R.4
-
50
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
DOI 10.1038/13732
-
Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Séraphin B. 1999. A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17: 1030-1032. (Pubitemid 29474865)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
51
-
-
33845436047
-
Large-Scale Sequencing Reveals 21U-RNAs and Additional MicroRNAs and Endogenous siRNAs in C. elegans
-
DOI 10.1016/j.cell.2006.10.040, PII S0092867406014681
-
Ruby J, Jan C, Player C, Axtell M, Lee W, Nusbaum C, Ge H, Bartel D. 2006. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 127: 1193-1207. (Pubitemid 44894525)
-
(2006)
Cell
, vol.127
, Issue.6
, pp. 1193-1207
-
-
Ruby, J.G.1
Jan, C.2
Player, C.3
Axtell, M.J.4
Lee, W.5
Nusbaum, C.6
Ge, H.7
Bartel, D.P.8
-
52
-
-
65949096636
-
Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes
-
doi: 10.1371/journal.pbio.1000048.
-
Schrimpf SP, Weiss M, Reiter L, Ahrens CH, Jovanovic M, Malmström J, Brunner E, Mohanty S, Lercher MJ, Hunziker PE, et al. 2009. Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes. PLoS Biol 7: e48. doi: 10.1371/journal.pbio.1000048.
-
(2009)
PLoS Biol
, vol.7
-
-
Schrimpf, S.P.1
Weiss, M.2
Reiter, L.3
Ahrens, C.H.4
Jovanovic, M.5
Malmström, J.6
Brunner, E.7
Mohanty, S.8
Lercher, M.J.9
Hunziker, P.E.10
-
53
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M, Schwanhäusser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N. 2008. Widespread changes in protein synthesis induced by microRNAs. Nature 455: 58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhäusser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
55
-
-
28944439309
-
Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution
-
DOI 10.1016/j.cell.2005.11.023, PII S0092867405012729
-
Stark A, Brennecke J, Bushati N, Russell R, Cohen S. 2005. Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution. Cell 123: 1133-1146. (Pubitemid 41785426)
-
(2005)
Cell
, vol.123
, Issue.6
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
Russell, R.B.4
Cohen, S.M.5
-
56
-
-
39749110083
-
Small non-coding RNAs in animal development
-
DOI 10.1038/nrm2347, PII NRM2347
-
Stefani G, Slack FJ. 2008. Small non-coding RNAs in animal development. Nat Rev Mol Cell Biol 9: 219-230. (Pubitemid 351301826)
-
(2008)
Nature Reviews Molecular Cell Biology
, vol.9
, Issue.3
, pp. 219-230
-
-
Stefani, G.1
Slack, F.J.2
-
60
-
-
33750000660
-
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture
-
doi: 10.1093/nar/gkl590
-
Vinther J, Hedegaard MM, Gardner PP, Andersen JS, Arctander P. 2006. Identification of miRNA targets with stable isotope labeling by amino acids in cell culture. Nucleic Acids Res 34: e107. doi: 10.1093/nar/gkl590.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Vinther, J.1
Hedegaard, M.M.2
Gardner, P.P.3
Andersen, J.S.4
Arctander, P.5
-
61
-
-
31844442152
-
Computational analysis of microRNA targets in Caenorhabditis elegans
-
DOI 10.1016/j.gene.2005.09.035, PII S0378111905006529
-
Watanabe Y, Yachie N, Numata K, Saito R, Kanai A, Tomita M. 2006. Computational analysis of microRNA targets in Caenorhabditis elegans. Gene 365: 2-10. (Pubitemid 43185217)
-
(2006)
Gene
, vol.365
, Issue.1-2 SPEC. ISS.
, pp. 2-10
-
-
Watanabe, Y.1
Yachie, N.2
Numata, K.3
Saito, R.4
Kanai, A.5
Tomita, M.6
-
62
-
-
59349087552
-
Importin 8 is a gene silencing factor that targets Argonaute proteins to distinct mRNAs
-
Weinmann L, Höck J, Ivacevic T, Ohrt T, Mütze J, Schwille P, Kremmer E, Benes V, Urlaub H, Meister G. 2009. Importin 8 is a gene silencing factor that targets Argonaute proteins to distinct mRNAs. Cell 136: 496-507.
-
(2009)
Cell
, vol.136
, pp. 496-507
-
-
Weinmann, L.1
Höck, J.2
Ivacevic, T.3
Ohrt, T.4
Mütze, J.5
Schwille, P.6
Kremmer, E.7
Benes, V.8
Urlaub, H.9
Meister, G.10
-
63
-
-
0027730383
-
Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
-
DOI 10.1016/0092-8674(93)90530-4
-
Wightman B, Ha I, Ruvkun G. 1993. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 75: 855-862. (Pubitemid 24014543)
-
(1993)
Cell
, vol.75
, Issue.5
, pp. 855-862
-
-
Wightman, B.1
Ha, I.2
Ruvkun, G.3
-
64
-
-
78649254115
-
Pervasive and cooperative deadenylation of 3′UTRs by embryonic microRNA families
-
Wu E, Thivierge C, Flamand M, Mathonnet G, Vashisht AA,Wohlschlegel J, Fabian MR, Sonenberg N, Duchaine TF. 2010. Pervasive and cooperative deadenylation of 3′UTRs by embryonic microRNA families. Mol Cell 40: 558-570.
-
(2010)
Mol Cell
, vol.40
, pp. 558-570
-
-
Wu, E.1
Thivierge, C.2
Flamand, M.3
Mathonnet, G.4
Vashisht, A.A.5
Wohlschlegel, J.6
Fabian, M.R.7
Sonenberg, N.8
Duchaine, T.F.9
-
65
-
-
58149186499
-
MiRecords: An integrated resource for microRNA-target interactions
-
Xiao F, Zuo Z, Cai G, Kang S, Gao X, Li T. 2009. miRecords: An integrated resource for microRNA-target interactions. Nucleic Acids Res 37: D105-D110.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Xiao, F.1
Zuo, Z.2
Cai, G.3
Kang, S.4
Gao, X.5
Li, T.6
-
66
-
-
36249012075
-
Systematic Identification of C. elegans miRISC Proteins, miRNAs, and mRNA Targets by Their Interactions with GW182 Proteins AIN-1 and AIN-2
-
DOI 10.1016/j.molcel.2007.09.014, PII S1097276507006260
-
Zhang L, Ding L, Cheung T, Dong M, Chen J, Sewell A, Liu X, Yatesiii J, Han M. 2007. Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2. Mol Cell 28: 598-613. (Pubitemid 350137791)
-
(2007)
Molecular Cell
, vol.28
, Issue.4
, pp. 598-613
-
-
Zhang, L.1
Ding, L.2
Cheung, T.H.3
Dong, M.-Q.4
Chen, J.5
Sewell, A.K.6
Liu, X.7
Yates III, J.R.8
Han, M.9
-
67
-
-
70350038073
-
Systematic analysis of dynamic miRNA-target interactions during C. elegans development
-
Zhang L, Hammell M, Kudlow BA, Ambros V, Han M. 2009. Systematic analysis of dynamic miRNA-target interactions during C. elegans development. Development 136: 3043-3055.
-
(2009)
Development
, vol.136
, pp. 3043-3055
-
-
Zhang, L.1
Hammell, M.2
Kudlow, B.A.3
Ambros, V.4
Han, M.5
-
68
-
-
77954838957
-
Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls
-
Zhang C, Frias MA, Mele A, Ruggiu M, Eom T, Marney CB,Wang H, Licatalosi DD, Fak JJ, Darnell RB. 2010. Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls. Science 329: 439-443.
-
(2010)
Science
, vol.329
, pp. 439-443
-
-
Zhang, C.1
Frias, M.A.2
Mele, A.3
Ruggiu, M.4
Eom, T.5
Marney, C.B.6
Wang, H.7
Licatalosi, D.D.8
Fak, J.J.9
Darnell, R.B.10
-
69
-
-
76349122201
-
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
-
Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW. 2010. Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans. Nat Struct Mol Biol 17: 173-179.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 173-179
-
-
Zisoulis, D.G.1
Lovci, M.T.2
Wilbert, M.L.3
Hutt, K.R.4
Liang, T.Y.5
Pasquinelli, A.E.6
Yeo, G.W.7
|