Characterization and identification of cold tolerant near-isogenic lines in rice

Breeding Science

Volumn 62, Issue 2, 2012, Pages 196-201

  Zhou, Lei ^a,c   Zeng, Yawen ^b   Hu, Guanglong ^a,d   Pan, Yinghua ^a   Yang, Shuming ^b   You, Aiqing ^c   Zhang, Hongliang ^a   Li, Jinjie ^a   Li, Zichao ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF MEDICINAL PLANTS   (China)

^c INSTITUTE OF PLANT PROTECTION   (China)

^d INSTITUTE OF PLANT AND ENVIRONMENT PROTECTION   (China)

Author keywords

Booting stage; Cold tolerance; Near isogenic lines; Oryza sativa

Indexed keywords

JAPONICA; ORYZA SATIVA;

EID: 84863466973     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.62.196     Document Type: Note

References (38)

1. Abe, N., S. Kotaka, K. Toriyama and M. Kobayashi (1989) Development of the "Rice Norin PL 8" with high tolerance to cool temperature at the booting stage. Res. Bull. Hokkaido Natl. Agr. Exp. Stn. 152: 9-17.
2. Andaya, V.C. and D.J. Mackill (2003) QTLs conferring cold tolerance at the booting stage of rice using recombinant inbred lines from a japonica × indica cross. Theor. Appl. Genet. 106: 1084-1090.
3. Ashikari, M., H. Sakakibara, S. Lin, T. Yamamoto, T. Takashi, A. Nishimura, E.R. Angeles, Q. Qian, H. Kitano and M. Matsuoka (2005) Cytokinin oxidase regulates rice grain production. Science 309: 741-745.
4. Bertin, P., J.M. Kinet and J. Bouharmont (1996) Evaluation of chilling sensitivity in diferent rice varieties. Relationship between screening procedures applied during germination and vegetative growth. Euphytica 89: 201-210.
5. Cheng, K.S. (1993) Rice genetic resources in Yunnan. Wu Zhengyi Symposium on Biodiversity in Yunnan. Yunnan Presshouse Science and Technology, Kunming, China, pp. 90-94.
6. Chung, G.S. (1979) The rice cold tolerance program in Korea. In: Report of a Rice Cold Tolerance Workshop, Manila: IRRI, 7-20.
7. Dai, L., X. Lin, C. Ye, K. Ise, K. Saito, A. Kato, F. Xu, T. Yu and D. Zhang (2004) Identification of quantitative trait loci controlling cold tolerance at the reproductive stage in Yunnan landrace of rice, Kunmingxiaobaigu. Breed. Sci. 54: 253-258.
8. Farrell, T.C. and L.G. Lewin (2006) Minimising cold damage during reproductive development among temperate rice genotypes. II. Genotypic variation and flowering traits related to cold tolerance screening. Aust. J. Agric. Res. 57: 89-100.
9. Futsuhara, Y. and K. Toriyama (1966) Genetic studies on cool tolerance in rice. III. Linkage relations between genes controlling cool tolerance and marker genes of Nagao and Takahashi. Jpn. J. Breed. 16: 19-30.
10. Han, L.Z., Y.L. Qiao, Y.Y. Zhang, G.L. Cao, J.D. Yea and H.J. Koh (2005) Identification of QTLs for cold tolerance at the booting stage in rice. Acta Agron. Sin. 31: 653-657.
11. Harr, B., M. Kauer and C. Schlötterer (2002) Hitchhiking mapping: a population based fine mapping strategy for adaptive mutations in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 99: 12949-12954.
12. He, G.M., X.J. Luo, F. Tian, K. Li, Z.F. Zhu, W. Su, X. Qian, Y.C. Fu, X.K. Wang, C.Q. Sun et al. (2006) Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in rice. Genome Res. 16: 618-626.
13. Horisue, N., Y. Kunihiro, T. Higashi, Z. Oyamada, H. Wang, J. Xiong, S. Zhang,
14. International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-799.
15. Konishi, S., T. Izawa, S.Y. Lin, K. Ebana, Y. Fukuta, T. Sasaki and M. Yano (2006) An SNP caused loss of seed shattering during rice domestication. Science 312: 1392-1396.
16. Kuroki, M., K. Saito, S. Matsuba, N. Yokogami, H. Shimizu, I. Ando and Y. Sato (2007) A quantitative trait locus for cold tolerance at the booting stage on rice chromosome 8. Theor. Appl. Genet. 115: 593-600.
17. Li, T.G., R.M. Visperas and B.S. Vergara (1981) The relationship between rice cold tolerance and different growth stages. J. Integr. Plant Biol. 23: 203-207.
18. Li, T. G. and W.M. Guo (1993) Identification and study on tolerance in main stresses of China cultivated rice germplasm resource. In: Ying,C.S. (ed.) Rice Germplasm Resources in China. China Agricultural Science and Technology Press, Beijing, pp. 71-75.
19. Li, X., C.C. Dai, Y. Cheng, T. Chen and D.M. Jiao (2006) Identification for cold tolerance at different growth stages in rice (Oryza sativa L.) and physiological mechanism of differential cold tolerance. Acta Agron. Sin. 32: 76-83.
20. Liu, F.X., C.Q. Sun, L.B. Tan, Y.C. Fu, D.J. Li and X.K. Wang (2003) Identification and mapping of quantitative trait loci controlling cold tolerance of Chinese common wild rice (O. rufipogon Griff.) at booting to flowering stages. Chin. Sci. Bull. 48: 2068-2071.
21. McCouch, S.R., G. Kochert, Z.H. Yu, Z.Y. Wang, G.S. Khush, W.R. Coffman and S.D. Tanksley (1988) Molecular mapping of rice chromosomes. Theor. Appl. Genet. 76: 815-829.
22. McCouch, S.R., L. Teytelman, Y. Xu, K. B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li, Y. Xing et al. (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) (Supplement). DNA Res. 9: 199-207.
23. Mori, M., K. Onishi, Y. Tokizono, H. Shinada, T. Yoshimura, Y. Numao, H. Miura and T. Sato (2011) Detection of a novel quantitative trait locus for cold tolerance at the booting stage derived from a tropical japonica rice variety Silewah. Breed. Sci. 61: 61-68.
24. Oh, C.S., Y.H. Choi, S.J. Lee, D.B. Yoon, H.P. Moon and S.N. Ahn (2004) Mapping quantitative trait loci for cold tolerance in weedy rice. Breed. Sci. 54: 373-380.
25. Rogers, O.S. and A.J. Bendich (1988) Extraction of DNA from plant tissues. Plant Mol. Biol. Manual A6: 1-10.
26. Saito, K., K. Miura, K. Nagano, Y. Hayano-Saito, A. Saito, H. Araki and A. Kato (1995) Chromosomal location of quantitative trait loci for cool tolerance at the booting stage in rice variety 'Norin-PL8'. Breed. Sci. 45: 337-340.
27. Saito, K., K. Miura, K. Nagano, Y. Hayano-Saito, H. Araki and A. Kato (2001) Identification of two closely linked quantitative trait loci for cold tolerance on chromosome 4 of rice and their association with anther length. Theor. Appl. Genet. 103: 862-868.
28. Saito, K., Y. Hayano-Saito, W. Maruyama-Funatsuki, Y. Sato and A. Kato (2004) Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice. Theor. Appl. Genet. 109: 515-522.
29. Satake, T. (1976) Determination of the most sensitive stage to sterile-type cool injury in rice plants. Res. Bull. Hokkaido Natl. Agric. Exp. Stn. 113: 1-33.
30. Shen, S.Q., Y.W. Zeng, S. C.Li, G.S. Wen and X.Y. Pu (2005) Mapping cold tolerance gene by near-isogenic lines at booting stage in japonica rice. Chin. J. Rice Sci. 19: 217-222.
31. Smith, J.M. and J. Haish (1974) The hitch-hiking effect of a favourable gene. Genet. Res. 23: 23-35.
32. SPSS 11.0 for Macintosh. Chicago, IL: SPSS Inc.
33. Suh, J.P., J.U. Jeung, J.I. Lee, Y.H. Choi, J.D. Yea, P.S. Virk, D.J. Mackill and K.K. Jena (2010) Identification and analysis of QTLs controlling cold tolerance at the reproductive stage and validation of effective QTLs in cold-tolerant genotypes of rice (Oryza sativa L.). Theor. Appl. Genet. 120: 985-995.
34. Takeuchi, Y., H. Hayasaka, B. Chiba, I. Tanaka, T. Shimano, M. Yamagishi, K. Nagano, T. Sasaki and M. Yano (2001) Mapping quantitative trait loci controlling cool-temperature tolerance at booting stage in temperate japonica rice. Breed. Sci. 51: 191-197.
35. Temnykh, S., W.D. Park, N. Ayres, S. Cartinhour, N. Hauck, L. Lipovich, Y.G. Cho, T. Ishii and S.R. McCouch (2000) Mapping and genome organization of microsatellite sequence in rice (Oryza sativa L.). Theor. Appl. Genet. 100: 697-712.
36. Xu, L.M., L. Zhou, Y.W. Zeng, F.M. Wang, H.L. Zhang, S.Q. Shen and Z.C. Li (2008) Identification and mapping of quantitative trait loci for cold tolerance at the booting stage in a japonica rice near-isogenic line. Plant Sci. 174: 340-347.
37. Zhan, Q.C., K.Y. Zhu, Z.W. Chen and S.Z. Zeng (2004) Mapping QTLs controlling seedling cold tolerance in rice using F2 population, J. Hunan Agric. Univ (Nat. Sci.). 30: 303-306.
38. Zhou, L., Y.W. Zeng, W.W. Zheng, B. Tang, S.M. Yang, H.L. Zhang, J.J. Li and Z. C. Li (2010) Fine mapping a QTL qCTB7 for cold tolerance at the booting stage on rice chromosome 7 using a near-isogenic line. Theor. Appl. Genet. 121: 895-905.