Patterns of nuclear genetic variation in the poecilogonous polychaete Streblospio benedicti

Integrative and Comparative Biology

Volumn 52, Issue 1, 2012, Pages 173-180

  Rockman, Matthew V ^a  

^a NEW YORK UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE;

ALLELE; ANIMAL; AT RICH SEQUENCE; CELL NUCLEUS; CONFERENCE PAPER; DNA SEQUENCE; FEMALE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; HETEROZYGOTE; MUTATION RATE; POLYCHAETA; POPULATION GENETICS; SPECIES DIFFERENCE;

ALLELES; ANIMALS; AT RICH SEQUENCE; CELL NUCLEUS; FEMALE; GENE FREQUENCY; GENETIC LOCI; GENETIC VARIATION; GENETICS, POPULATION; HAPLOTYPES; HETEROZYGOTE; LINKAGE DISEQUILIBRIUM; MUTATION RATE; NUCLEOTIDES; POLYCHAETA; RECOMBINATION, GENETIC; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

ANIMALIA; LOPHOTROCHOZOA; POLYCHAETA; STREBLOSPIO BENEDICTI;

EID: 84863439113     PISSN: 15407063     EISSN: 15577023     Source Type: Journal    
DOI: 10.1093/icb/ics083     Document Type: Conference Paper

References (29)

1. Allen JD, Pernet B. 2007. Intermediate modes of larval development: Bridging the gap between planktotrophy and lecithotrophy. Evol Develop 9:643-53.
2. Barrett JC, Fry B, Maller J, Daly MJ. 2005. Haploview: Analysis and visualization of LD and haplotype maps. Bioinformatics 21:263-5.
3. Etter PD, Bassham S, Hohenlohe PA, Johnson EA, Cresko WA. 2011. SNP discovery and genotyping for evolutionary genetics using RAD sequencing. Methods Mol Biol 772:157-78.
4. Gibson G, MacDonald K, Dufton M. 2010. Morphogenesis and phenotypic divergence in two developmental morphs of Streblospio benedicti (Annelida, Spionidae). Invert Biol 129:328-43.
5. Levin LA. 1984. Multiple patterns of development in Streblospio benedicti Webster (Spionidae) from three coasts of North America. Biol Bull 166:494-508.
6. Levin LA, Bridges TS. 1994. Control and consequences of alternative developmental modes in a poecilogonous polychaete. Am Zool 34:323-32.
7. Levin LA, Huggett DV. 1990. Implications of alternative reproductive modes for seasonality and demography in an estuarine polychaete. Ecology 71:2191-208.
8. Li N, Stephens M. 2003. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165:2213-33.
9. Levin LA, Zhu J, Creed E. 1991. The genetic basis of life-history characteristics in a polychaete exhibiting planktotrophy and lecithotrophy. Evolution 45:380-97.
10. Lynch M. 2007. The origins of genome architecture. Sunderland (MA): Sinauer Associates
11. Mahon AR, Mahon HK, Dauer DM, Halanych KM. 2009. Discrete genetic boundaries of three Streblospio (Spionidae, Annelida) species and the status of S. shrubsolii. Marine Biol Res 5:172-8.
12. Marsh AG, Fielman KT. 2005. Transcriptome profiling of individual larvae of two different developmental modes in the poecilogonous polychaete Streblospio benedicti (Spionidae). J Exp Zool (Mol Dev Evol) 304B:238-49.
13. McCain ER. 2008. Poecilogony as a tool for understanding speciation: Early development of Streblospio benedicti and Streblospio gynobranciata (Polychaeta: Spionidae). Invert Repr Dev 51:91-101.
14. Pernet B, McArthur L. 2006. Feeding by larvae of two different developmental modes in Streblospio benedicti (Polychaeta: Spionidae). Mar Biol 149:803-11.
15. Pernet B, McHugh D. 2010. Evolutionary changes in the timing of gut morphogenesis in larvae of the marine annelid Streblospio benedicti. Evol Develop 12:618-27.
16. Pritchard JK, Przeworski M. 2001. Linkage disequilibrium in humans: Models and data. Am J Hum Genet 69:1-14.
17. R Development Core Team. 2011. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing, http://cran.r-project. org/doc/FAQ/R-FAQ.html#Citing-R.
18. Rice SA, Rice KA. 2009. Variable modes of larval development in the Polydora cornuta complex (Polychaeta: Spionidae) are directly related to stored sperm availability. Zoosymposia 2:397-414.
19. Rozen S, Skaletsky H. 2000. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, editors. Bioinformatics methods and protocols: Methods in molecular biology. Totowa (NJ): Humana Press. p. 365-86.
20. Schulze SR, Rice SA, Simon JL, Karl SA. 2000. Evolution of poecilogony and the biogeography of North American populations of the polychaete Streblospio. Evolution 54:1247-59.
21. Smith MS, Zigler KS, Raff RA. 2007. Evolution of directdeveloping larvae: Selection vs loss. BioEssays 29:566-71.
22. Stehlik LL, Wilk SJ, Pikanowski RA, McMillan DG, MacHaffie EM. 2005. Benthic macrofauna and associated hydrographic observations collected in Newark Bay, New Jersey, between June 1993 and March 1994. US Department of Commerce, Northeast Fisheries Science Center Reference Document 05-07.
23. Stephens M, Donnelly P. 2003. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet 73:1162-9.
24. Stephens M, Smith NJ, Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-89.
25. Strathmann RR. 1978. The evolution and loss of feeding larval stages of marine invertebrates. Evolution 32:894-906.
26. Thornton K. 2003. libsequence: A C++ class library for evolutionary genetic analysis. Bioinformatics 19:2325-7.
27. Weir BS, Hill WG. 1986. Nonuniform recombination within the human beta-globin gene cluster. Am J Hum Genet 38:776-81.
28. Wray GA, Raff RA. 1991. The evolution of developmental strategy in marine invertebrates. Trends Ecol Evol 6:45-50.
29. Zakas C, Schult N, McHugh D, Jones KL, Wares JP. 2012. Transcriptome analysis and SNP development can resolve population differentiation of Streblospio benedicti, a developmentally dimorphic marine annelid. PLoS One 7:e31613.