Database support for exploring scientific workflow provenance graphs

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 7338 LNCS, Issue , 2012, Pages 343-360

  Anand, Manish Kumar ^a   Bowers, Shawn ^b   Ludäscher, Bertram ^c  

^a MICROSOFT   (United States)

^b GONZAGA UNIVERSITY   (United States)

^c University of California Davis   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DATABASE SUPPORT; EXPERIMENTAL EVALUATION; RELATIONAL DATABASE; RELATIONAL QUERIES; SCIENTIFIC WORKFLOWS; UNIQUE FEATURES; WORK-FLOW SYSTEMS;

ARTIFICIAL INTELLIGENCE;

GRAPHIC METHODS;

EID: 84863429325     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-31235-9_23     Document Type: Conference Paper

References (21)

1. Oinn, T., Addis, M., Ferris, J., Marvin, D., Senger, M., Greenwood, R., Carver, K., Pocock, M.G., Wipat, A., Li, P.: Taverna: a tool for the composition and enactment of bioinformatics workflow. Bioinformatics 20(1), 3045-3054 (2003)
2. Bowers, S., Ludäscher, B.: Actor-oriented design of scientific workflows. In: 24th Int. Conf. on Conceptual Modeling (2005)
3. Freire, J., Silva, C.T., Callahan, S.P., Santos, E., Scheidegger, C.E., Vo, H.T.: Managing Rapidly-Evolving Scientific Workflows. In: Moreau, L., Foster, I. (eds.) IPAW 2006. LNCS, vol. 4145, pp. 10-18. Springer, Heidelberg (2006)
4. Goecks, J., Nekrutenko, A., Taylor, J.: Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology 11, R86 (2010)
5. Cohen-Boulakia, S., Leser, U.: Search, Adapt, and Reuse: The Future of Scientific Workflow Management Systems. SIGMOD Record 40(2) (2011)
6. Berners-Lee, T., Hendler, J.: Publishing on the Semantic Web. Nature, 1023-1025 (2001)
7. Roure, D.D., Goble, C.A., Stevens, R.: The design and realisation of the myexperiment virtual research environment for social sharing of workflows. Future Generation Computer Systems 25(5), 561-567 (2009)
8. Mates, P., Santos, E., Freire, J., Silva, C.T.: CrowdLabs: Social Analysis and Visualization for the Sciences. In: Bayard Cushing, J., French, J., Bowers, S. (eds.) SSDBM 2011. LNCS, vol. 6809, pp. 555-564. Springer, Heidelberg (2011)
9. Goderis, A., Sattler, U., Lord, P., Goble, C.A.: Seven Bottlenecks to Workflow Reuse and Repurposing. In: Gil, Y., Motta, E., Benjamins, V.R., Musen, M.A. (eds.) ISWC 2005. LNCS, vol. 3729, pp. 323-337. Springer, Heidelberg (2005)
10. Xiang, X., Madley, G.: Improving the Reuse of Scientific Workflows and Their By-products. In: IEEE Int. Conf. on Web Services (2007)
11. Tversky, A.: Features of Similarity. Psychological Review 84, 327-352 (1977)
12. Tan, W., Zhang, J., Foster, I.: Network Analysis of Scientific Workflows: a Gateway to Reuse. IEEE Computer 43(9), 54-61 (2010)
13. Wassink, I., Vet, P.E.V.D., Wolstencroft, K., Neerincx, P.B.T., Roos, M., Rauwerda, H., Breit, T.M.: Analysing Scientific Workflows: Why Workflows Not Only Connect Web Services. In: IEEE Congress on Services (2009)
14. Stoyanovich, J., Taskar, B., Davidson, S.: Exploring repositories of scientific workflows. In: 1st Int. Workshop on Workflow Approaches to New Data-centric Science (2010)
15. Goderis, A., Li, P., Goble, C.: Workflow discovery: the problem, a case study from e-Science and a graph-based solution. In: IEEE Int. Conf. on Web Services (2006)
16. Zipf, G.: The Psycho-Biology of Language. MIT Press, Cambridge (1935)
17. Silva, V., Chirigati, F., Maia, K., Ogasawara, E., Oliveira, D., Braganholo, V., Murta, L., Mattoso, M.: Similarity-basedWorkflow Clustering. J. of Computational Interdisciplinary Science (2010)
18. Gil, Y., Kim, J., Florez, G., Ratnakar, V., Gonzalez-Calero, P.A.: Workflow matching using semantic metadata. In: 5th Int. Conf. on Knowledge Capture (2009)
19. Missier, P., Ludaescher, B., Dey, S., Wang, M., McPhillips, T., Bowers, S., Agun, M.: Golden-Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository. In: 7th Int. Digital Curation Conf. (2011)
20. Salton, G., McGill, M. (eds.): Introduction to Modern Information Retrieval. McGraw-Hill (1983)
21. Zhang, J., Tan, W., Alexander, J., Foster, I., Madduri, R.: Recommend-As-You- Go: A Novel Approach Supporting Services-Oriented Scientific Workflow Reuse. In: IEEE Int. Conf. on Services Computing (2011)