메뉴 건너뛰기




Volumn 4, Issue 1, 2012, Pages 21-26

Application of microarray in breast cancer: An overview

Author keywords

Breast cancer; DNA; genome; microarray

Indexed keywords

ARTIFICIAL NEURAL NETWORK; BREAST CANCER; CHROMOSOME REARRANGEMENT; CLINICAL DECISION MAKING; DNA METHYLATION; DNA MICROARRAY; EPIGENETICS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC HETEROGENEITY; GENOMICS; HUMAN; KARYOTYPE; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; MICROARRAY ANALYSIS; MOLECULAR DYNAMICS; ONCOGENE; PRIORITY JOURNAL; REVIEW; SINGLE NUCLEOTIDE POLYMORPHISM; TAXONOMY; TISSUE MICROARRAY;

EID: 84863399749     PISSN: None     EISSN: 09757406     Source Type: Journal    
DOI: 10.4103/0975-7406.92726     Document Type: Review
Times cited : (51)

References (56)
  • 2
    • 17144363256 scopus 로고    scopus 로고
    • Understanding breast cancer risk-Where do we stand in 2005?
    • Dumitrescu RG, Cotarla I. Understanding breast cancer risk-where do we stand in 2005? J Cell Mol Med 2005;9:208-21.
    • (2005) J Cell Mol Med , vol.9 , pp. 208-221
    • Dumitrescu, R.G.1    Cotarla, I.2
  • 3
    • 33749025026 scopus 로고    scopus 로고
    • Pathology and gene expression of hereditary breast tumors associated with BRCA1, BRCA2 and CHEK2 gene mutations
    • DOI 10.1038/sj.onc.1209875, PII 1209875
    • Honrado E, Osorio A, Palacios J, Benitez J. Pathology and gene expression of hereditary breast tumors associated with BRCA1, BRCA2 and CHEK2 gene mutations. Oncogene 2006;25:5837-45. (Pubitemid 44453439)
    • (2006) Oncogene , vol.25 , Issue.43 , pp. 5837-5845
    • Honrado, E.1    Osorio, A.2    Palacios, J.3    Benitez, J.4
  • 4
    • 0035845511 scopus 로고    scopus 로고
    • Gene experimentation pattern of breast carcinomas distinguish tumor subclasses with clinical implications
    • Sorliiea T, Peroua CM, Tibshiranie R, Aasf T, Geislerg S, Johnsenb H, et al. Gene experimentation pattern of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci USA 2001;98:10869-74.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 10869-10874
    • Sorliiea, T.1    Peroua, C.M.2    Tibshiranie, R.3    Aasf, T.4    Geislerg, S.5    Johnsenb, H.6
  • 6
    • 18844483267 scopus 로고    scopus 로고
    • The promise of microarrays in the management and treatment of breast cancer
    • DOI 10.1186/bcr1018, 100
    • Chang J, Hilsenbeck S, Fuqua S. The promise of microarrays in the management and treatment of breast cancer. Breast Cancer Res 2005;7:100-4. (Pubitemid 40704129)
    • (2005) Breast Cancer Research , vol.7 , Issue.3 , pp. 100-104
    • Chang, J.C.1    Hilsenbeck, S.G.2    Fuqua, S.A.W.3
  • 8
    • 79955391807 scopus 로고    scopus 로고
    • Microarray based class discovery for molecular classification of breast cancer: Analysis of interobserver agreement
    • Mackay A, Weigett B, Grigoriadis A, Kreike B, Natrajan R, A'Hern R, et al. Microarray based class discovery for molecular classification of breast cancer: Analysis of interobserver agreement. J Natl Cancer Inst 2011;103:662-73.
    • (2011) J Natl Cancer Inst , vol.103 , pp. 662-673
    • MacKay, A.1    Weigett, B.2    Grigoriadis, A.3    Kreike, B.4    Natrajan, R.5    A'Hern, R.6
  • 9
    • 79960198194 scopus 로고    scopus 로고
    • Distinct distribution and prognostic significance of molecular subtypes of breast cancer in chinese women: A population-based cohort study
    • Su Y, Zheng Y, Zheng W, Gu K, Chen Z, Li G, et al. Distinct distribution and prognostic significance of molecular subtypes of breast cancer in Chinese women: A population-based cohort study. BMC Cancer 2011;11:292.
    • (2011) BMC Cancer , vol.11 , pp. 292
    • Su, Y.1    Zheng, Y.2    Zheng, W.3    Gu, K.4    Chen, Z.5    Li, G.6
  • 12
    • 64949122409 scopus 로고    scopus 로고
    • Insulin-like growth factor-binding protein-3 in breast cancer: Analysis with tissue microarray
    • Sheen-Chen SM, Zhang H, Huang CC, Tang RP. Insulin-like growth factor-binding protein-3 in breast cancer: Analysis with tissue microarray. Anticancer Res 2009;29:1131-5.
    • (2009) Anticancer Res , vol.29 , pp. 1131-1135
    • Sheen-Chen, S.M.1    Zhang, H.2    Huang, C.C.3    Tang, R.P.4
  • 13
    • 79955121426 scopus 로고    scopus 로고
    • Correlation of microarray-based breast cancer molecular subtypes and clinical outcomes: Implications for treatment optimization
    • Kao KJ, Chang KM, Hsu HC, Huang AT. Correlation of microarray-based breast cancer molecular subtypes and clinical outcomes: Implications for treatment optimization. BMC Cancer 2011;18:143.
    • (2011) BMC Cancer , vol.18 , pp. 143
    • Kao, K.J.1    Chang, K.M.2    Hsu, H.C.3    Huang, A.T.4
  • 14
    • 38849101680 scopus 로고    scopus 로고
    • Molecular cytogenetic characterization of human breast cancer cell line MDA-MB-468 and its variant 468LN, which displays aggressive lymphatic metastasis
    • DOI 10.1016/j.cancergencyto.2007.05.030, PII S0165460807005894
    • Xu J, Chambers AF, Tuck AB, Rodenhiser DI. Molecular cytogenetic characterization of human breast cancer cell line MDA-MB-468 and its variant 468LN, which displays aggressive lymphatic metastasis. Cancer Genet Cytogenet 2008;181:1-7. (Pubitemid 351192030)
    • (2008) Cancer Genetics and Cytogenetics , vol.181 , Issue.1 , pp. 1-7
    • Xu, J.1    Chambers, A.F.2    Tuck, A.B.3    Rodenhiser, D.I.4
  • 16
    • 42949163130 scopus 로고    scopus 로고
    • Genome wide h3k9 histone acetylation profiles are altered in benzopyrene treated mcf7 breast cancer cells
    • Sadikovic B, Andrews J, Carter D, Robinson J, Rodenhiser DI. Genome wide H3K9 histone acetylation profiles are altered in benzopyrene treated MCF7 breast cancer cells. J Biol Chem 2008;283:4051-60.
    • (2008) J Biol Chem , vol.283 , pp. 4051-4060
    • Sadikovic, B.1    Andrews, J.2    Carter, D.3    Robinson, J.4    Rodenhiser, D.I.5
  • 17
    • 65849265065 scopus 로고    scopus 로고
    • Epigenetic mapping and functional analysis in a breast cancer metastasis model using whole-genome promoter tiling microarrays
    • Rodenhiser DI, Andrews J, Kennette W, Sadikovic B, Mendlowitz A, Tuck AB, et al. Epigenetic mapping and functional analysis in a breast cancer metastasis model using whole-genome promoter tiling microarrays. Breast Cancer Res 2008;10:R62.
    • (2008) Breast Cancer Res , vol.10
    • Rodenhiser, D.I.1    Andrews, J.2    Kennette, W.3    Sadikovic, B.4    Mendlowitz, A.5    Tuck, A.B.6
  • 19
    • 27144488136 scopus 로고    scopus 로고
    • Molecular portraits and 70-gene prognosis signature are preserved throughout the metastatic process of breast cancer
    • DOI 10.1158/0008-5472.CAN-05-2553
    • Weigelt B, Hu Z, He X, Livasy C, Carey LA, Evend MG, et al. Molecular portraits and 70-gene prognosis signature are preserved throughout the metastatic process of breast cancer. Cancer Res 2005;65:9155-8. (Pubitemid 41507977)
    • (2005) Cancer Research , vol.65 , Issue.20 , pp. 9155-9158
    • Weigelt, B.1    Hu, Z.2    He, X.3    Livasy, C.4    Carey, L.A.5    Ewend, M.G.6    Glas, A.M.7    Perou, C.M.8    Van't Veer, L.J.9
  • 21
    • 1542316051 scopus 로고    scopus 로고
    • Microarrays bring new insights into understanding of breast cancer metastasis to bone
    • DOI 10.1186/bcr736
    • Welch DR. Microarrays bring new insights into understanding of breast cancer metastasis to bone. Breast Cancer Res 2004;6:61-4. (Pubitemid 38324843)
    • (2004) Breast Cancer Research , vol.6 , Issue.2 , pp. 61-64
    • Welch, D.R.1
  • 24
    • 33646874546 scopus 로고    scopus 로고
    • The molecular portraits of breast tumors are conserved across microarray platforms
    • Hu Z, Fan C, Oh DS, Marron JS, He X, Qaqish BF, et al. The molecular portraits of breast tumors are conserved across microarray platforms. BMC Genomics 2006;7:96.
    • (2006) BMC Genomics , vol.7 , pp. 96
    • Hu, Z.1    Fan, C.2    Oh, D.S.3    Marron, J.S.4    He, X.5    Qaqish, B.F.6
  • 28
    • 33748286796 scopus 로고    scopus 로고
    • A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers
    • DOI 10.1038/ng1861, PII NG1861
    • Carter SL, Eklund AC, Kohane IS, Harris LN, Szallasi Z. A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers. Nat Genet 2006;38:1043-8. (Pubitemid 44325930)
    • (2006) Nature Genetics , vol.38 , Issue.9 , pp. 1043-1048
    • Carter, S.L.1    Eklund, A.C.2    Kohane, I.S.3    Harris, L.N.4    Szallasi, Z.5
  • 30
    • 40849139208 scopus 로고    scopus 로고
    • Epigenetics in cancer
    • Esteller M. Epigenetics in cancer. N Engl J Med 2008;358:1148-59.
    • (2008) N Engl J Med , vol.358 , pp. 1148-1159
    • Esteller, M.1
  • 31
    • 33947315736 scopus 로고    scopus 로고
    • Cancer epigenomics: DNA methylomes and histone-modification maps
    • DOI 10.1038/nrg2005, PII NRG2005
    • Esteller M. Cancer epigenomics: DNA methylomes and histone modification maps. Nat Rev Genet 2007;8:286-98. (Pubitemid 46439286)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.4 , pp. 286-298
    • Esteller, M.1
  • 32
    • 77952499379 scopus 로고    scopus 로고
    • Mutli-platform whole-genome microarray analyses refine the epigenetic signature of breast cancer metastasis with gene expression and copy number
    • Rodenhiser DI, Andrews J, Kennette W, Pilon J, Hodgson A, Tuck AB, et al. Mutli-platform whole-genome microarray analyses refine the epigenetic signature of breast cancer metastasis with gene expression and copy number. PLoS ONE 2010;5:e8665.
    • (2010) PLoS ONE , vol.5
    • Rodenhiser, D.I.1    Andrews, J.2    Kennette, W.3    Pilon, J.4    Hodgson, A.5    Tuck, A.B.6
  • 33
    • 70249124197 scopus 로고    scopus 로고
    • Development of a microarray platrform for FFPET profiling: Application to the classification of human tumors
    • Duenwald S, Zhou M, Wang Y, Lejnines S, Kulkarin A, Graves J, et al. Development of a microarray platrform for FFPET profiling: Application to the classification of human tumors. J Transl Med 2009;7:65.
    • (2009) J Transl Med , vol.7 , pp. 65
    • Duenwald, S.1    Zhou, M.2    Wang, Y.3    Lejnines, S.4    Kulkarin, A.5    Graves, J.6
  • 34
    • 84863397554 scopus 로고    scopus 로고
    • Breast cancer patients stratification by microarray-based gene expression profiling from FFPET samples
    • Lih C, Li Y, Trinh L, Chien S, Wu X, Liu W, et al. Breast cancer patients stratification by microarray-based gene expression profiling from FFPET samples. J Clin Oncol 2009;27:e22041.
    • (2009) J Clin Oncol , vol.27
    • Lih, C.1    Li, Y.2    Trinh, L.3    Chien, S.4    Wu, X.5    Liu, W.6
  • 35
    • 2342631260 scopus 로고    scopus 로고
    • Translating cancer genomics into clinical oncology
    • DOI 10.1056/NEJMp048059
    • Ramaswamy S. Translating cancer genomics into clinical oncology. N Engl J Med 2004;350:1814-6. (Pubitemid 38917246)
    • (2004) New England Journal of Medicine , vol.350 , Issue.18 , pp. 1814-1816
    • Ramaswamy, S.1
  • 36
    • 77949529725 scopus 로고    scopus 로고
    • Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples
    • April C, Klotzle B, Royce T, Wickham-Garcia E, Boyaniwsky T, Izzo J, et al. Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples. PLoS One 2009;4:e8162.
    • (2009) PLoS One , vol.4
    • April, C.1    Klotzle, B.2    Royce, T.3    Wickham-Garcia, E.4    Boyaniwsky, T.5    Izzo, J.6
  • 37
    • 0033932514 scopus 로고    scopus 로고
    • Effect of formalin tissue fixation and processing on immunohistochemistry
    • DOI 10.1097/00000478-200007000-00014
    • Werner M, Chott A, Fabiano A, Battifora H. Effect of formalin tissue fixation and processing on immunohistochemistry. Am J Surg Pathol 2000;24:1016-9. (Pubitemid 30430490)
    • (2000) American Journal of Surgical Pathology , vol.24 , Issue.7 , pp. 1016-1019
    • Werner, M.1    Chott, A.2    Fabiano, A.3    Battifora, H.4
  • 39
    • 0033571272 scopus 로고    scopus 로고
    • Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples
    • DOI 10.1093/nar/27.22.4436
    • Masuda N, Ohnishi T, Kawamoto S, Monden M, Okubo K. Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples. Nucleic Acids Res 1999;27:4436-43. (Pubitemid 29533185)
    • (1999) Nucleic Acids Research , vol.27 , Issue.22 , pp. 4436-4443
    • Masuda, N.1    Ohnishi, T.2    Kawamoto, S.3    Monden, M.4    Okubo, K.5
  • 41
    • 39049088082 scopus 로고    scopus 로고
    • Protein expression profiling of breast cancer cells by dissociable antibody microarray (DAMA) staining
    • DOI 10.1074/mcp.M700115-MCP200
    • Song XC, Fu G, Yang X, Jiang Z, Wang Y, Zhou WG. Protein expression profiling of breast cancer cells by dissociable antibody microarray (DAMA) staining. Mol Cell Proteomics 2008;7:163-9. (Pubitemid 351248241)
    • (2008) Molecular and Cellular Proteomics , vol.7 , Issue.1 , pp. 163-169
    • Song, X.C.1    Fu, G.2    Yang, X.3    Jiang, Z.4    Wang, Y.5    Zhou, G.W.6
  • 43
    • 30944442856 scopus 로고    scopus 로고
    • The Akt pathway in human breast cancer: A tissue-array-based analysis
    • DOI 10.1038/modpathol.3800525, PII 3800525
    • Bose S, Chandran S, Mirocha JM, Bose N. The Akt pathway in human breast cancer: A tissue-array-based analysis. Mod Pathol 2006;19:238-45. (Pubitemid 43117608)
    • (2006) Modern Pathology , vol.19 , Issue.2 , pp. 238-245
    • Bose, S.1    Chandran, S.2    Mirocha, J.M.3    Bose, N.4
  • 47
    • 41349115501 scopus 로고    scopus 로고
    • Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation
    • Smith DD, Saetrom P, Snove O Jr, Lundberg C, Rivas GE, Glackin C, et al. Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation. BMC Bioinformatics 2008;9:63.
    • (2008) BMC Bioinformatics , vol.9 , pp. 63
    • Smith, D.D.1    Saetrom, P.2    Snove Jr., O.3    Lundberg, C.4    Rivas, G.E.5    Glackin, C.6
  • 48
    • 58149229504 scopus 로고    scopus 로고
    • Gene expression meta-analysis identifies chromosomal regions and candidate genes involved in breast cancer metastasis
    • Thomassen M, Tan Q, Kruse TA. Gene expression meta-analysis identifies chromosomal regions and candidate genes involved in breast cancer metastasis. Breast Cancer Res Treat 2009;113:239-49.
    • (2009) Breast Cancer Res Treat , vol.113 , pp. 239-249
    • Thomassen, M.1    Tan, Q.2    Kruse, T.A.3
  • 49
    • 0141450348 scopus 로고    scopus 로고
    • Comparison and meta-analysis of microarray data: From the bench to the computer desk
    • DOI 10.1016/j.tig.2003.08.006
    • Moreau Y, Aerts S, De Moor B, De Strooper B, Dabrowski M. Comparison and meta-analysis of microarray data: From the bench to the computer desk. Trends Genet 2003;19:570-7. (Pubitemid 37204916)
    • (2003) Trends in Genetics , vol.19 , Issue.10 , pp. 570-577
    • Moreau, Y.1    Aerts, S.2    De Moor, B.3    De Strooper, B.4    Dabrowski, M.5
  • 50
    • 0036682376 scopus 로고    scopus 로고
    • Meta-analysis of microarrays: Interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer
    • Rhodes DR, Barrette TR, Rubin MA, Ghosh D, Chinnaiyan AM. Meta-analysis of microarrays: Interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer. Cancer Res 2002;62:4427-33. (Pubitemid 34827303)
    • (2002) Cancer Research , vol.62 , Issue.15 , pp. 4427-4433
    • Rhodes, D.R.1    Barrette, T.R.2    Rubin, M.A.3    Ghosh, D.4    Chinnaiyan, A.M.5
  • 51
    • 4944232237 scopus 로고    scopus 로고
    • Combining multiple microarray studies and modeling interstudy variation
    • DOI 10.1093/bioinformatics/btg1010
    • Choi JK, Yu U, Kim S, Yoo OJ. Combining multiple microarray studies and modeling interstudy variation. Bioinformatics 2003;19 Suppl 1:i84-90. (Pubitemid 41185603)
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1
    • Choi, J.K.1    Yu, U.2    Kim, S.3    Yoo, O.J.4
  • 52
    • 27844594381 scopus 로고    scopus 로고
    • Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes
    • Warnat P, Eils R, Brors B. Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. BMC Bioinformatics 2005;6:265.
    • (2005) BMC Bioinformatics , vol.6 , pp. 265
    • Warnat, P.1    Eils, R.2    Brors, B.3
  • 53
    • 60649092138 scopus 로고    scopus 로고
    • Resampling-based meta-analysis for detection of differential gene expression in breast cancer
    • Gur-Dedeoglu B, Konu O, Kir S, Ozturk AR, Bozkurt B, Ergul G, et al. Resampling-based meta-analysis for detection of differential gene expression in breast cancer. BMC Cancer 2008;8:396.
    • (2008) BMC Cancer , vol.8 , pp. 396
    • Gur-Dedeoglu, B.1    Konu, O.2    Kir, S.3    Ozturk, A.R.4    Bozkurt, B.5    Ergul, G.6
  • 55
    • 84864037760 scopus 로고    scopus 로고
    • Recurrence online: An online analysis tool to determine breast cancer recurrence and hormone receptor status using microarray data
    • In press
    • Gyorffy B, Benke Z, Lanczky A, Balazs B, Szallasi Z, Timar J, et al. Recurrence online: An online analysis tool to determine breast cancer recurrence and hormone receptor status using microarray data. Breast Cancer Res Treat 2011 In press.
    • (2011) Breast Cancer Res Treat
    • Gyorffy, B.1    Benke, Z.2    Lanczky, A.3    Balazs, B.4    Szallasi, Z.5    Timar, J.6
  • 56
    • 79151483638 scopus 로고    scopus 로고
    • An online survival analysis tool to rapidly assess the effect of 22,277 genes on breast cancer prognosis using microarray data of 1,809 patients
    • Gyorffy B, Lanczky A, Eklund AC, Denkert C, Budczies J, Li Q, et al. An online survival analysis tool to rapidly assess the effect of 22,277 genes on breast cancer prognosis using microarray data of 1,809 patients. Breast Cancer Res Treat 2010;123:725-31.
    • (2010) Breast Cancer Res Treat , vol.123 , pp. 725-731
    • Gyorffy, B.1    Lanczky, A.2    Eklund, A.C.3    Denkert, C.4    Budczies, J.5    Li, Q.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.