Validation of a major QTL for salinity tolerance on chromosome 1 of rice in three different breeding populations

Agrochimica

Volumn 55, Issue 6, 2011, Pages 355-366

  Islam, M R ^a   Gregorio, G B ^b   Salam, M A ^a   Collard, B C Y ^b   Tumimbangraiz, E ^b   Adorada, D L ^b   Mendoza, R D ^b   Singh, R K ^b   Hassan, L ^c  

^a BANGLADESH RICE RESEARCH INSTITUTE   (Bangladesh)

^b INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^c BANGLADESH AGRICULTURAL UNIVERSITY   (Bangladesh)

Author keywords

Microsatellite marker; QTL; Rice; Salinity tolerance; Validation

Indexed keywords

EID: 84863350878     PISSN: 00021857     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (25)

1. BASTEN, C, WEIR, B. and ZENG, Z.B.: QTL Cartographer. Department of Statistics, North Carolina State University, Raleigh, NC (2001).
2. BONILLA, P.S., DVORAK, J., MACKILL, D., DEAL, K. and GRECORIO, G.: RFLP and SSLP mapping of salinity tolerance genes in chromosome 1 of rice (Oryzo saliva L.) using recombinant inbred lines. The Philippines Agricultural Scientist, 85(1), 64-74 (2002)
3. CAKIR, M., GUPTA, S., PLATZ, G.J., ABLETT, G.A., LOUGHMAN, R., EMEBIRI, L.C., POULSEN, D., LI, CD., LANCE, R.C.M., GALWEY, N. W., JONES, M.G.K and APPELS, R.: Mapping and validation of the genes for resistance to Pyrenophora teres f. teres in barley (Hordeum vulgare L.). Aust J Agric Res., 54,1369-1377 (2003). (Pubitemid 38106419)
4. COLLINS, H.M., PANOZZO, J.F., LOGUE, S.J., JEFFERIES, S. and BARR, A.R.: Mapping and validation of chromosome regions associated with high malt extract in barley (Hordeum vulgare L.). Aust J Agric Res., 54, 1223-1240 (2003). (Pubitemid 38106407)
5. GREGORIO, G.B., SENADHIRA, D.R., MENDOZA, D., MANIGBAS, N.L., ROXAS, J.P. and GUERTA, C.Q.: Progress in breeding for salinity tolerance and other abiotic associated stresses in rice. Field Crops Res, 76, 91-101 (2002). (Pubitemid 34623093)
6. GREGORIO, G.B.: Tagging salinity tolerance genes in rice using amplified fragment length polymorphism (AFLP). [Ph.D. dissertation. College, Laguna, Philippines: University of the Philippines Los Baños, Laguna, pp. 118 (1997).
7. GREGORIO, G.B., Senadhira D. and Mendoza R D.: Screening rice for salinity tolerance. IRRI discussion paper series no. 22. IRRI, DAPO Box 7777, Metro Manila, The Philippines, pp 3-19 (1997).
8. GREGORIO, G.B. and SENADHIRA, D.: Genetics analysis of salinity tolerance in rice. Theor Appl Gen., 86, 333-338 (1993).
9. IRRI (International Rice Research Institute): Annual Report for 1997. Manila (Philippines): International Rice Research Institute, p. 308 (2007).
10. st Asia and World. Population Research Institute, Ninon University, Japan (1997).
11. LANG, NT., ZHIKANG, L.I. and Bui C.B.: Microsatellite markers linked to salt tolerance in rice. Omonrice, 9, 9-21,(2001).
12. LANG, N.T., YANAGIHARA, S. and Buu, B.C.: Quantitative trait loci for salt tolerance in rice via molecular markers. Omonrice, 8, 37-48 (2000).
13. LIN, H.X., YANAGIHARA, S., ZHUANG, J.Y., SENBOKU, T., ZHENG, K.L. and YASHIMA, S.: Identification of QTL for salt tolerance in rice via molecular markers. Chinese J. Rice Sci., 12 (2), 72-78 (1998).
14. MACKILL, D J., NGUYEN, H.T. and ZHAN, J.: Use of molecular markers in plant improvement programs for rainfed lowland rice. Field Crops Res., 64, 177-185 (1999).
15. MANLY, K.F., CUDMORE, H., ROBERT, Jr and MEER, J.M.: Map Manager QTX, cross-platform software for genetic mapping. Genome, 12, 930-932 (2001). (Pubitemid 33064378)
16. MORI, I. and KINOSHITA, T.: Salt tolerance of rice callus clones. Rice genetics newsletter, 4, 112-113 (1987).
17. NIONES, J.M.: Fine mapping of the salinity tolerance gene on chromosome I of rice (Oryza sativa L.) using near isogenic lines. MS dissertation. College, Laguna, Philippines: University of the Philippines Los Bafios, Laguna (2004).
18. SENADHIRA, D.: Salinity as a constraint to increasing rice production in Asia. Required workshop on maintenance of life support species in Asia Pacific Region, 4-7 April (1987).
19. SHANNON, M.C.: Principles and strategies in breeding for higher salt tolerance. Plant and soil, 89, 227-241 (1985).
20. TEMNYKH, S., PARK, W.D., AYRES, N., CARTHINOUR, S., HAUCK, N., LIPOVICH, L., CHO, Y.G., ISHII, T. and MCCOUCH, S.R.: Mapping and genome organization of microsatellites sequences in rice (Oryza sativa L). Theor Appl Genet., 100, 697-712 (2000). (Pubitemid 30217884)
21. Tuan, V.D., FUKUTA, Y., TANO, M. and BAN, T.: Mapping quantitative trait loci for salinity tolerance in rice. OmonRice, 8, 27-35 (2000).
22. Ware, D.H., JAISWAL, P.J., Ni, J.J., YAP, I., PAN, X.K., CLARK, K.Y., TEYTELMAN, L., SCHMIDT, S.C., ZHAO, W., CHANG, K., CARTINHOUR, S., STEIN, L.D. and MCCOUCH, S.R.: Gramene, a tool for grass Genomics. Plant Physiology, 130, 1606-1613(2002). (Pubitemid 36035161)
23. YEO, A R. and FLOWESR, T.J.: The physiology of salinity tolerance in rice (O. sativa) and a pyramiding approach to breeding varieties for saline soils. Aust. J. Plant Physiol, 13,75-91 (1986).
24. YOSHIDA, S., FORNO, D.A., COCK, J.H. and GOMEZ, K.A.: Laboratory manual for physiological studies of rice. International Rice Research Institute (IRRI), Los Banos, The Philippines (1976).
25. ZHENG, K., HUANG, N., BENNETT, J. and KHUSH, G.S.: PCR-based marker assisted selection in rice breeding. IRRI. Manila, pp. 16-18 (1995).