메뉴 건너뛰기




Volumn 7, Issue 3, 2012, Pages

Genome-wide DNA methylation indicates silencing of tumor suppressor genes in uterine leiomyoma

Author keywords

[No Author keywords available]

Indexed keywords

CYTOKERATIN 19; DELETED IN LUNG AND ESOPHAGEAL CANCER 1; DNA; DNA METHYLTRANSFERASE INHIBITOR; KRUPPEL LIKE FACTOR 11; MESSENGER RNA; TUMOR SUPPRESSOR PROTEIN; UNCLASSIFIED DRUG; PRIMER DNA;

EID: 84863281534     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0033284     Document Type: Article
Times cited : (111)

References (46)
  • 1
    • 0029125227 scopus 로고
    • Abnormal gene expression in uterine leiomyomas
    • Andersen J, Barbieri RL, (1995) Abnormal gene expression in uterine leiomyomas. J Soc Gynecol Investig 2: 663-672.
    • (1995) J Soc Gynecol Investig , vol.2 , pp. 663-672
    • Andersen, J.1    Barbieri, R.L.2
  • 2
  • 3
    • 0037245894 scopus 로고    scopus 로고
    • High cumulative incidence of uterine leiomyoma in black and white women: ultrasound evidence
    • Baird DD, Dunson DB, Hill MC, Cousins D, Schectman JM, (2003) High cumulative incidence of uterine leiomyoma in black and white women: ultrasound evidence. Am J Obstet Gynecol 188 (1): 100-7.
    • (2003) Am J Obstet Gynecol , vol.188 , Issue.1 , pp. 100-107
    • Baird, D.D.1    Dunson, D.B.2    Hill, M.C.3    Cousins, D.4    Schectman, J.M.5
  • 4
    • 0033669987 scopus 로고    scopus 로고
    • Clinical decision making regarding leiomyomata: what we need in the next millenium
    • Haney AF, (2000) Clinical decision making regarding leiomyomata: what we need in the next millenium. Environ Health Perspect 108 (Suppl 5): 835-839.
    • (2000) Environ Health Perspect , vol.108 , Issue.SUPPL. 5 , pp. 835-839
    • Haney, A.F.1
  • 5
    • 33748779351 scopus 로고    scopus 로고
    • Health care resource use for uterine fibroid tumors in the United States
    • Flynn M, Jamison M, Datta S, Myers E, (2006) Health care resource use for uterine fibroid tumors in the United States. Am J Obstet Gynecol 195: 955-964.
    • (2006) Am J Obstet Gynecol , vol.195 , pp. 955-964
    • Flynn, M.1    Jamison, M.2    Datta, S.3    Myers, E.4
  • 6
    • 77957866076 scopus 로고    scopus 로고
    • Profiling and functional analyses of microRNAs and their target gene products in human uterine leiomyomas
    • Zavadil J, Ye H, Liu Z, Wu J, Lee P, et al. (2010) Profiling and functional analyses of microRNAs and their target gene products in human uterine leiomyomas. PLoS One 5: e12362.
    • (2010) PLoS One , vol.5
    • Zavadil, J.1    Ye, H.2    Liu, Z.3    Wu, J.4    Lee, P.5
  • 7
    • 0035139934 scopus 로고    scopus 로고
    • Leiomyomata: heritability and cytogenetic studies
    • Ligon AH, Morton CC, (2001) Leiomyomata: heritability and cytogenetic studies. Hum Reprod Update 7: 8-14.
    • (2001) Hum Reprod Update , vol.7 , pp. 8-14
    • Ligon, A.H.1    Morton, C.C.2
  • 8
    • 34249803559 scopus 로고    scopus 로고
    • Methyl-CpG-binding domain (MBD) proteins in plants
    • Grafi G, Zemach A, Pitto L, (2007) Methyl-CpG-binding domain (MBD) proteins in plants. Biochim Biophys Acta 1769: 287-294.
    • (2007) Biochim Biophys Acta , vol.1769 , pp. 287-294
    • Grafi, G.1    Zemach, A.2    Pitto, L.3
  • 9
    • 0037486949 scopus 로고    scopus 로고
    • DNA hypomethylation and imbalanced expression of DNA methyltransferases (DNMT1, 3A, and 3B) in human uterine leiomyoma
    • Li S, Chiang TC, Richard-Davis G, Barrett JC, McLachlan JA, (2003) DNA hypomethylation and imbalanced expression of DNA methyltransferases (DNMT1, 3A, and 3B) in human uterine leiomyoma. Gynecol Oncol 90: 123-130.
    • (2003) Gynecol Oncol , vol.90 , pp. 123-130
    • Li, S.1    Chiang, T.C.2    Richard-Davis, G.3    Barrett, J.C.4    McLachlan, J.A.5
  • 10
    • 67449138538 scopus 로고    scopus 로고
    • DNA methyltransferase expression in the human endometrium: down-regulation by progesterone and estrogen
    • Yamagata Y, Asada H, Tamura I, Lee L, Maekawa R, et al. (2009) DNA methyltransferase expression in the human endometrium: down-regulation by progesterone and estrogen. Hum Reprod 24: 1126-1132.
    • (2009) Hum Reprod , vol.24 , pp. 1126-1132
    • Yamagata, Y.1    Asada, H.2    Tamura, I.3    Lee, L.4    Maekawa, R.5
  • 11
    • 53049107302 scopus 로고    scopus 로고
    • Potential link between estrogen receptor-alpha gene hypomethylation and uterine fibroid formation
    • Asada H, Yamagata Y, Taketani T, Matsuoka A, Tamura H, et al. (2008) Potential link between estrogen receptor-alpha gene hypomethylation and uterine fibroid formation. Mol Hum Reprod 14: 539-545.
    • (2008) Mol Hum Reprod , vol.14 , pp. 539-545
    • Asada, H.1    Yamagata, Y.2    Taketani, T.3    Matsuoka, A.4    Tamura, H.5
  • 12
    • 61449477534 scopus 로고    scopus 로고
    • GoldenGate assay for DNA methylation profiling
    • Bibikova M, Fan JB, (2009) GoldenGate assay for DNA methylation profiling. Methods Mol Biol 507: 149-163.
    • (2009) Methods Mol Biol , vol.507 , pp. 149-163
    • Bibikova, M.1    Fan, J.B.2
  • 13
    • 77949533751 scopus 로고    scopus 로고
    • A collection of bioconductor methods to visualize gene-list annotations
    • Feng G, Du P, Krett NL, Tessel M, Rosen S, et al. (2010) A collection of bioconductor methods to visualize gene-list annotations. BMC Res Notes 3: 10.
    • (2010) BMC Res Notes , vol.3 , pp. 10
    • Feng, G.1    Du, P.2    Krett, N.L.3    Tessel, M.4    Rosen, S.5
  • 14
    • 66149147445 scopus 로고    scopus 로고
    • High aromatase expression in uterine leiomyoma tissues of African-American women
    • Ishikawa H, Reierstad S, et al. (2009) High aromatase expression in uterine leiomyoma tissues of African-American women. J Clin Endocrinol Metab 94 (5): 1752-1756.
    • (2009) J Clin Endocrinol Metab , vol.94 , Issue.5 , pp. 1752-1756
    • Ishikawa, H.1    Reierstad, S.2
  • 15
    • 80355127216 scopus 로고    scopus 로고
    • Disease-dependent Differently Methylated Regions (D-DMRs) of DNA are Enriched on the X Chromosome in Uterine Leiomyoma
    • Maekawa R, Yagi S, Ohgane J, Yamagata Y, Asada H, et al. (2011) Disease-dependent Differently Methylated Regions (D-DMRs) of DNA are Enriched on the X Chromosome in Uterine Leiomyoma. J Reprod Dev.
    • (2011) J Reprod Dev
    • Maekawa, R.1    Yagi, S.2    Ohgane, J.3    Yamagata, Y.4    Asada, H.5
  • 16
    • 80052873130 scopus 로고    scopus 로고
    • Does aberrant DNA methylation occur in human uterine leiomyomas? An attempt of genome-wide screening by MS-RDA
    • Cai LY, Izumi S, et al. (2011) Does aberrant DNA methylation occur in human uterine leiomyomas? An attempt of genome-wide screening by MS-RDA. Tokai J Exp Clin Med 36 (3): 84-90.
    • (2011) Tokai J Exp Clin Med , vol.36 , Issue.3 , pp. 84-90
    • Cai, L.Y.1    Izumi, S.2
  • 17
    • 34547784612 scopus 로고    scopus 로고
    • Transcriptional activation of steroidogenic factor-1 by hypomethylation of the 5′ CpG island in endometriosis
    • Xue Q, Lin Z, Yin P, Milad MP, Cheng YH, et al. (2007) Transcriptional activation of steroidogenic factor-1 by hypomethylation of the 5′ CpG island in endometriosis. J Clin Endocrinol Metab 92: 3261-3267.
    • (2007) J Clin Endocrinol Metab , vol.92 , pp. 3261-3267
    • Xue, Q.1    Lin, Z.2    Yin, P.3    Milad, M.P.4    Cheng, Y.H.5
  • 18
    • 18744410984 scopus 로고    scopus 로고
    • Gene expression studies provide clues to the pathogenesis of uterine leiomyoma: new evidence and a systematic review
    • Arslan AA, Gold LI, Mittal K, Suen TC, Belitskaya-Levy I, et al. (2005) Gene expression studies provide clues to the pathogenesis of uterine leiomyoma: new evidence and a systematic review. Hum Reprod 20: 852-863.
    • (2005) Hum Reprod , vol.20 , pp. 852-863
    • Arslan, A.A.1    Gold, L.I.2    Mittal, K.3    Suen, T.C.4    Belitskaya-Levy, I.5
  • 19
    • 34247268492 scopus 로고    scopus 로고
    • DNA microarray data integration by ortholog gene analysis reveals potential molecular mechanisms of estrogen-dependent growth of human uterine fibroids
    • Wei T, Geiser AG, Qian HR, Su C, Helvering LM, et al. (2007) DNA microarray data integration by ortholog gene analysis reveals potential molecular mechanisms of estrogen-dependent growth of human uterine fibroids. BMC Womens Health 7: 5.
    • (2007) BMC Womens Health , vol.7 , pp. 5
    • Wei, T.1    Geiser, A.G.2    Qian, H.R.3    Su, C.4    Helvering, L.M.5
  • 20
    • 0036295999 scopus 로고    scopus 로고
    • Insights from gene arrays on the development and growth regulation of uterine leiomyomata
    • Tsibris JC, Segars J, Coppola D, Mane S, Wilbanks GD, et al. (2002) Insights from gene arrays on the development and growth regulation of uterine leiomyomata. Fertil Steril 78: 114-121.
    • (2002) Fertil Steril , vol.78 , pp. 114-121
    • Tsibris, J.C.1    Segars, J.2    Coppola, D.3    Mane, S.4    Wilbanks, G.D.5
  • 21
    • 0042354626 scopus 로고    scopus 로고
    • Strategy for elucidating differentially expressed genes in leiomyomata identified by microarray technology
    • Catherino WH, Prupas C, Tsibris JC, Leppert PC, Payson M, et al. (2003) Strategy for elucidating differentially expressed genes in leiomyomata identified by microarray technology. Fertil Steril 80: 282-290.
    • (2003) Fertil Steril , vol.80 , pp. 282-290
    • Catherino, W.H.1    Prupas, C.2    Tsibris, J.C.3    Leppert, P.C.4    Payson, M.5
  • 22
    • 0042855699 scopus 로고    scopus 로고
    • New and old regulators of uterine leiomyoma growth from screening with DNA arrays
    • Tsibris JC, Segars J, Enkemann S, Coppola D, Wilbanks GD, et al. (2003) New and old regulators of uterine leiomyoma growth from screening with DNA arrays. Fertil Steril 80: 279-281.
    • (2003) Fertil Steril , vol.80 , pp. 279-281
    • Tsibris, J.C.1    Segars, J.2    Enkemann, S.3    Coppola, D.4    Wilbanks, G.D.5
  • 23
    • 1242314757 scopus 로고    scopus 로고
    • Targeted cellular process profiling approach for uterine leiomyoma using cDNA microarray, proteomics and gene ontology analysis
    • Ahn WS, Kim KW, Bae SM, Yoon JH, Lee JM, et al. (2003) Targeted cellular process profiling approach for uterine leiomyoma using cDNA microarray, proteomics and gene ontology analysis. Int J Exp Pathol 84: 267-279.
    • (2003) Int J Exp Pathol , vol.84 , pp. 267-279
    • Ahn, W.S.1    Kim, K.W.2    Bae, S.M.3    Yoon, J.H.4    Lee, J.M.5
  • 24
    • 4544307523 scopus 로고    scopus 로고
    • Molecular characterization of uterine fibroids and its implication for underlying mechanisms of pathogenesis
    • Hoffman PF, Milliken DB, Gregg LC, Davis RR, Gregg JP, (2004) Molecular characterization of uterine fibroids and its implication for underlying mechanisms of pathogenesis. Fertil Steril 82: 639-649.
    • (2004) Fertil Steril , vol.82 , pp. 639-649
    • Hoffman, P.F.1    Milliken, D.B.2    Gregg, L.C.3    Davis, R.R.4    Gregg, J.P.5
  • 26
    • 0037717021 scopus 로고    scopus 로고
    • Differential gene expression in uterine leiomyoma
    • Skubitz KM, Skubitz AP, (2003) Differential gene expression in uterine leiomyoma. J Lab Clin Med 141: 297-308.
    • (2003) J Lab Clin Med , vol.141 , pp. 297-308
    • Skubitz, K.M.1    Skubitz, A.P.2
  • 27
    • 80054979013 scopus 로고    scopus 로고
    • Hypermethylation of the CpG island spanning from exon II to intron III is associated with steroidogenic factor 1 expression in stromal cells of endometriosis
    • Xue Q, Zhou YF, et al. (2011) Hypermethylation of the CpG island spanning from exon II to intron III is associated with steroidogenic factor 1 expression in stromal cells of endometriosis. Reprod Sci 18 (11): 1080-1084.
    • (2011) Reprod Sci , vol.18 , Issue.11 , pp. 1080-1084
    • Xue, Q.1    Zhou, Y.F.2
  • 28
    • 0042855701 scopus 로고    scopus 로고
    • Distinctive proliferative phase differences in gene expression in human myometrium and leiomyomata
    • Wang H, Mahadevappa M, Yamamoto K, Wen Y, Chen B, et al. (2003) Distinctive proliferative phase differences in gene expression in human myometrium and leiomyomata. Fertil Steril 80: 266-276.
    • (2003) Fertil Steril , vol.80 , pp. 266-276
    • Wang, H.1    Mahadevappa, M.2    Yamamoto, K.3    Wen, Y.4    Chen, B.5
  • 29
    • 45949086682 scopus 로고    scopus 로고
    • TGFbeta regulated gene expression by Smads and Sp1/KLF-like transcription factors in cancer
    • Ellenrieder V, (2008) TGFbeta regulated gene expression by Smads and Sp1/KLF-like transcription factors in cancer. Anticancer Res 28: 1531-1539.
    • (2008) Anticancer Res , vol.28 , pp. 1531-1539
    • Ellenrieder, V.1
  • 30
    • 0141625268 scopus 로고    scopus 로고
    • An mSin3A interaction domain links the transcriptional activity of KLF11 with its role in growth regulation
    • Fernandez-Zapico ME, Mladek A, Ellenrieder V, Folch-Puy E, Miller L, et al. (2003) An mSin3A interaction domain links the transcriptional activity of KLF11 with its role in growth regulation. EMBO J 22: 4748-4758.
    • (2003) EMBO J , vol.22 , pp. 4748-4758
    • Fernandez-Zapico, M.E.1    Mladek, A.2    Ellenrieder, V.3    Folch-Puy, E.4    Miller, L.5
  • 31
    • 76749167058 scopus 로고    scopus 로고
    • Transcription factor KLF11 integrates progesterone receptor signaling and proliferation in uterine leiomyoma cells
    • Yin P, Lin Z, Reierstad S, Wu J, Ishikawa H, et al. (2010) Transcription factor KLF11 integrates progesterone receptor signaling and proliferation in uterine leiomyoma cells. Cancer Res 70: 1722-1730.
    • (2010) Cancer Res , vol.70 , pp. 1722-1730
    • Yin, P.1    Lin, Z.2    Reierstad, S.3    Wu, J.4    Ishikawa, H.5
  • 32
    • 0034954161 scopus 로고    scopus 로고
    • A conserved alpha-helical motif mediates the interaction of Sp1-like transcriptional repressors with the corepressor mSin3A
    • Zhang JS, Moncrieffe MC, Kaczynski J, Ellenrieder V, Prendergast FG, et al. (2001) A conserved alpha-helical motif mediates the interaction of Sp1-like transcriptional repressors with the corepressor mSin3A. Mol Cell Biol 21: 5041-5049.
    • (2001) Mol Cell Biol , vol.21 , pp. 5041-5049
    • Zhang, J.S.1    Moncrieffe, M.C.2    Kaczynski, J.3    Ellenrieder, V.4    Prendergast, F.G.5
  • 33
    • 0033561527 scopus 로고    scopus 로고
    • Molecular cloning of a candidate tumor suppressor gene, DLC1, from chromosome 3p21.3
    • Daigo Y, Nishiwaki T, Kawasoe T, Tamari M, Tsuchiya E, et al. (1999) Molecular cloning of a candidate tumor suppressor gene, DLC1, from chromosome 3p21.3. Cancer Res 59: 1966-1972.
    • (1999) Cancer Res , vol.59 , pp. 1966-1972
    • Daigo, Y.1    Nishiwaki, T.2    Kawasoe, T.3    Tamari, M.4    Tsuchiya, E.5
  • 34
    • 33646434223 scopus 로고    scopus 로고
    • Candidate tumor-suppressor gene DLEC1 is frequently downregulated by promoter hypermethylation and histone hypoacetylation in human epithelial ovarian cancer
    • Kwong J, Lee JY, Wong KK, Zhou X, Wong DT, et al. (2006) Candidate tumor-suppressor gene DLEC1 is frequently downregulated by promoter hypermethylation and histone hypoacetylation in human epithelial ovarian cancer. Neoplasia 8: 268-278.
    • (2006) Neoplasia , vol.8 , pp. 268-278
    • Kwong, J.1    Lee, J.Y.2    Wong, K.K.3    Zhou, X.4    Wong, D.T.5
  • 35
    • 0023854888 scopus 로고
    • Sequence of the human 40-kDa keratin reveals an unusual structure with very high sequence identity to the corresponding bovine keratin
    • Eckert LR, (1988) Sequence of the human 40-kDa keratin reveals an unusual structure with very high sequence identity to the corresponding bovine keratin. Proc Natl Acad Sci USA 85 (4): 1114-1118.
    • (1988) Proc Natl Acad Sci USA , vol.85 , Issue.4 , pp. 1114-1118
    • Eckert, L.R.1
  • 36
    • 0033278007 scopus 로고    scopus 로고
    • Keratin 19 downregulation by oral squamous cell carcinoma lines increases invasive potential
    • Crowe DL, Milo GE, et al. (1999) Keratin 19 downregulation by oral squamous cell carcinoma lines increases invasive potential. J Dent Res 78 (6): 1256-1263.
    • (1999) J Dent Res , vol.78 , Issue.6 , pp. 1256-1263
    • Crowe, D.L.1    Milo, G.E.2
  • 37
    • 79751526520 scopus 로고    scopus 로고
    • Identification of epigenetically regulated genes that predict patient outcome in neuroblastoma
    • Caren H, Djos A, et al. (2011) Identification of epigenetically regulated genes that predict patient outcome in neuroblastoma. BMC Cancer 11: 66.
    • (2011) BMC Cancer , vol.11 , pp. 66
    • Caren, H.1    Djos, A.2
  • 38
    • 38549126847 scopus 로고    scopus 로고
    • Functional epigenomics approach to identify methylated candidate tumour suppressor genes in renal cell carcinoma
    • Morris MR, Gentle D, et al. (2008) Functional epigenomics approach to identify methylated candidate tumour suppressor genes in renal cell carcinoma. Br J Cancer 98 (2): 496-501.
    • (2008) Br J Cancer , vol.98 , Issue.2 , pp. 496-501
    • Morris, M.R.1    Gentle, D.2
  • 39
    • 33846815517 scopus 로고    scopus 로고
    • Significance, detection and markers of disseminated breast cancer cells
    • Lacroix M, (2006) Significance, detection and markers of disseminated breast cancer cells. Endocr Relat Cancer 13 (4): 1033-1067.
    • (2006) Endocr Relat Cancer , vol.13 , Issue.4 , pp. 1033-1067
    • Lacroix, M.1
  • 40
    • 84655174913 scopus 로고    scopus 로고
    • Utility of urothelial mRNA markers in blood for staging and monitoring bladder cancer
    • Marin-Aguilera M, Mengual L, et al. (2012) Utility of urothelial mRNA markers in blood for staging and monitoring bladder cancer. Urology 79 (1): 240 e249-240 e215.
    • (2012) Urology , vol.79 , Issue.1 , pp. 240-249
    • Marin-Aguilera, M.1    Mengual, L.2
  • 41
    • 4544298732 scopus 로고    scopus 로고
    • Sample size for identifying differentially expressed genes in microarray experiments
    • Wang SJ, Chen JJ, (2004) Sample size for identifying differentially expressed genes in microarray experiments. J Comput Biol 11: 714-726.
    • (2004) J Comput Biol , vol.11 , pp. 714-726
    • Wang, S.J.1    Chen, J.J.2
  • 42
    • 0026560240 scopus 로고
    • Presence of epidermal growth factor, platelet-derived growth factor, and their receptors in human myometrial tissue and smooth muscle cells: their action in smooth muscle cells in vitro
    • Rossi MJ, Chegini N, Masterson BJ, (1992) Presence of epidermal growth factor, platelet-derived growth factor, and their receptors in human myometrial tissue and smooth muscle cells: their action in smooth muscle cells in vitro. Endocrinology 130: 1716-1727.
    • (1992) Endocrinology , vol.130 , pp. 1716-1727
    • Rossi, M.J.1    Chegini, N.2    Masterson, B.J.3
  • 43
    • 46249088370 scopus 로고    scopus 로고
    • lumi: a pipeline for processing Illumina microarray
    • Du P, Kibbe WA, Lin SM, (2008) lumi: a pipeline for processing Illumina microarray. Bioinformatics 24: 1547-1548.
    • (2008) Bioinformatics , vol.24 , pp. 1547-1548
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3
  • 44
    • 39149111937 scopus 로고    scopus 로고
    • Model-based variance-stabilizing transformation for Illumina microarray data
    • Lin SM, Du P, Huber W, Kibbe WA, (2008) Model-based variance-stabilizing transformation for Illumina microarray data. Nucleic Acids Res 36: e11.
    • (2008) Nucleic Acids Res , vol.36
    • Lin, S.M.1    Du, P.2    Huber, W.3    Kibbe, W.A.4
  • 45
    • 78649475003 scopus 로고    scopus 로고
    • Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
    • Du P, Zhang X, Huang CC, Jafari N, Kibbe WA, et al. (2010) Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics 11: 587.
    • (2010) BMC Bioinformatics , vol.11 , pp. 587
    • Du, P.1    Zhang, X.2    Huang, C.C.3    Jafari, N.4    Kibbe, W.A.5
  • 46
    • 77949533751 scopus 로고    scopus 로고
    • A collection of bioconductor methods to visualize gene-list annotations
    • Feng G, Du P, Krett NL, Tessel M, Rosen S, et al. (2010) A collection of bioconductor methods to visualize gene-list annotations. BMC Res Notes 3: 10.
    • (2010) BMC Res Notes , vol.3 , pp. 10
    • Feng, G.1    Du, P.2    Krett, N.L.3    Tessel, M.4    Rosen, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.