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Volumn 1, Issue , 2010, Pages

Simple tricks for improving pattern-based information extraction from the biomedical literature

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EID: 84863237864     PISSN: None     EISSN: 20411480     Source Type: Journal    
DOI: 10.1186/2041-1480-1-9     Document Type: Article
Times cited : (12)

References (33)
  • 1
    • 17244380380 scopus 로고    scopus 로고
    • A survey of current work in biomedical text mining
    • 10.1093/bib/6.1.57, 15826357
    • Cohen AM, Hersh WR. A survey of current work in biomedical text mining. Brief Bioinform 2005, 6:57-71. 10.1093/bib/6.1.57, 15826357.
    • (2005) Brief Bioinform , vol.6 , pp. 57-71
    • Cohen, A.M.1    Hersh, W.R.2
  • 2
    • 36348990139 scopus 로고    scopus 로고
    • Frontiers of biomedical text mining: current progress
    • 10.1093/bib/bbm045, 2516302, 17977867
    • Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB. Frontiers of biomedical text mining: current progress. Brief Bioinform 2007, 8:358-375. 10.1093/bib/bbm045, 2516302, 17977867.
    • (2007) Brief Bioinform , vol.8 , pp. 358-375
    • Zweigenbaum, P.1    Demner-Fushman, D.2    Yu, H.3    Cohen, K.B.4
  • 4
    • 0038017587 scopus 로고    scopus 로고
    • Mining microarray expression data by literature profiling
    • research0055, 10.1186/gb-2002-3-10-research0055, 134484, 12372143
    • Chaussabel D, Sher A. Mining microarray expression data by literature profiling. Genome Biol 2002, 3:research0055. 10.1186/gb-2002-3-10-research0055, 134484, 12372143.
    • (2002) Genome Biol , vol.3
    • Chaussabel, D.1    Sher, A.2
  • 5
    • 0033655017 scopus 로고    scopus 로고
    • Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts
    • Stapley BJ, Benoit G. Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts. Pac Symp Biocomput 2000, 529-540.
    • (2000) Pac Symp Biocomput , pp. 529-540
    • Stapley, B.J.1    Benoit, G.2
  • 8
    • 78049245506 scopus 로고    scopus 로고
    • A comprehensive benchmark of kernel methods to extract protein-protein interaction from literature
    • Tikk D, Thomas P, Palaga P, Hakenberg J, Leser U. A comprehensive benchmark of kernel methods to extract protein-protein interaction from literature. PLoS Compl Biology 2010, 6(7):e1000837.
    • (2010) PLoS Compl Biology , vol.6 , Issue.7
    • Tikk, D.1    Thomas, P.2    Palaga, P.3    Hakenberg, J.4    Leser, U.5
  • 9
    • 49549095524 scopus 로고    scopus 로고
    • Gene mention normalization and interaction extraction with context models and sentence motifs
    • 10.1186/gb-2008-9-s2-s14, 2559985, 18834492
    • Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M. Gene mention normalization and interaction extraction with context models and sentence motifs. Genome Biology 2008, (Suppl 2):S14. 10.1186/gb-2008-9-s2-s14, 2559985, 18834492.
    • (2008) Genome Biology , Issue.SUPPL. 2
    • Hakenberg, J.1    Plake, C.2    Royer, L.3    Strobelt, H.4    Leser, U.5    Schroeder, M.6
  • 10
    • 25144508650 scopus 로고    scopus 로고
    • Discovering patterns to extract protein-protein interactions from the literature: Part II
    • 10.1093/bioinformatics/bti493, 15890744
    • Hao Y, Zhu X, Huang M, Li M. Discovering patterns to extract protein-protein interactions from the literature: Part II. Bioinformatics 2005, 21:3294-3300. 10.1093/bioinformatics/bti493, 15890744.
    • (2005) Bioinformatics , vol.21 , pp. 3294-3300
    • Hao, Y.1    Zhu, X.2    Huang, M.3    Li, M.4
  • 12
    • 33645104154 scopus 로고    scopus 로고
    • Extraction of regulatory gene/protein networks from Medline
    • 10.1093/bioinformatics/bti597, 16046493
    • Saric J, Jensen LJ, Ouzounova R, Rojas I, Bork P. Extraction of regulatory gene/protein networks from Medline. Bioinformatics 2006, 22:645-650. 10.1093/bioinformatics/bti597, 16046493.
    • (2006) Bioinformatics , vol.22 , pp. 645-650
    • Saric, J.1    Jensen, L.J.2    Ouzounova, R.3    Rojas, I.4    Bork, P.5
  • 13
    • 33847294345 scopus 로고    scopus 로고
    • RelEx - relation extraction using dependency parse trees
    • 10.1093/bioinformatics/btl616, 17142812
    • Fundel K, Kuffner R, Zimmer R. RelEx - relation extraction using dependency parse trees. Bioinformatics 2007, 23:365-371. 10.1093/bioinformatics/btl616, 17142812.
    • (2007) Bioinformatics , vol.23 , pp. 365-371
    • Fundel, K.1    Kuffner, R.2    Zimmer, R.3
  • 14
    • 0001413266 scopus 로고    scopus 로고
    • Toward routine automatic pathway discovery from on-line scientific text abstracts
    • Ng SK, Wong M. Toward routine automatic pathway discovery from on-line scientific text abstracts. Genome Inform Ser Workshop Genome Inform 1999, 10:104-112.
    • (1999) Genome Inform Ser Workshop Genome Inform , vol.10 , pp. 104-112
    • Ng, S.K.1    Wong, M.2
  • 15
    • 0036594916 scopus 로고    scopus 로고
    • Information extraction in molecular biology
    • 10.1093/bib/3.2.154, 12139435
    • Blaschke C, Hirschman L, Valencia A. Information extraction in molecular biology. Brief Bioinform 2002, 3:154-165. 10.1093/bib/3.2.154, 12139435.
    • (2002) Brief Bioinform , vol.3 , pp. 154-165
    • Blaschke, C.1    Hirschman, L.2    Valencia, A.3
  • 17
    • 0018015137 scopus 로고
    • Modelling by shortest data description
    • Rissanen J. Modelling by shortest data description. Automatica 1978, 14:465-471.
    • (1978) Automatica , vol.14 , pp. 465-471
    • Rissanen, J.1
  • 20
    • 51049088875 scopus 로고    scopus 로고
    • Overview of the protein-protein interaction annotation extraction task of BioCreative II
    • 10.1186/gb-2008-9-s2-s4, 2559988, 18834495
    • Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A. Overview of the protein-protein interaction annotation extraction task of BioCreative II. Genome Biol 2008, 9(Suppl 2):S4. 10.1186/gb-2008-9-s2-s4, 2559988, 18834495.
    • (2008) Genome Biol , vol.9 , Issue.SUPPL. 2
    • Krallinger, M.1    Leitner, F.2    Rodriguez-Penagos, C.3    Valencia, A.4
  • 22
    • 84901209586 scopus 로고    scopus 로고
    • Mining Relations from the Biomedical Literature
    • Humboldt-Universität zu Berlin
    • Hakenberg J. Mining Relations from the Biomedical Literature. PhD thesis 2009, Humboldt-Universität zu Berlin.
    • (2009) PhD thesis
    • Hakenberg, J.1
  • 23
    • 68649115793 scopus 로고    scopus 로고
    • A realistic assessment of methods for extracting gene/protein interactions from free text
    • 10.1186/1471-2105-10-233, 2723093, 19635172
    • Kabiljo R, Clegg A, Sheperd A. A realistic assessment of methods for extracting gene/protein interactions from free text. BMC Bioinformatics 2009, 10:233. 10.1186/1471-2105-10-233, 2723093, 19635172.
    • (2009) BMC Bioinformatics , vol.10 , pp. 233
    • Kabiljo, R.1    Clegg, A.2    Sheperd, A.3
  • 24
    • 40749087717 scopus 로고    scopus 로고
    • Corpus annotation for mining biomedical events from literature
    • 10.1186/1471-2105-9-10, 2267702, 18182099
    • Kim JD, Ohta T, Tsujii J. Corpus annotation for mining biomedical events from literature. BMC Bioinformatics 2008, 9:10. 10.1186/1471-2105-9-10, 2267702, 18182099.
    • (2008) BMC Bioinformatics , vol.9 , pp. 10
    • Kim, J.D.1    Ohta, T.2    Tsujii, J.3
  • 27
    • 84901209587 scopus 로고    scopus 로고
    • Syntactic simplification and semantic enrichment - trimming dependency graphs for event extraction
    • Buyko E, Faessler E, Wermter J, Hahn U. Syntactic simplification and semantic enrichment - trimming dependency graphs for event extraction. Computational Intelligence
    • Computational Intelligence
    • Buyko, E.1    Faessler, E.2    Wermter, J.3    Hahn, U.4
  • 29
    • 41349107398 scopus 로고    scopus 로고
    • OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression
    • 10.1186/1471-2105-9-78, 2275248, 18237434
    • Hunter L, Lu Z, Firby J, AB W, Johnson HL. OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinformatics 2008, 9:78. 10.1186/1471-2105-9-78, 2275248, 18237434.
    • (2008) BMC Bioinformatics , vol.9 , pp. 78
    • Hunter, L.1    Lu, Z.2    Firby, J.3    AB, W.4    Johnson, H.L.5
  • 30
    • 77954190136 scopus 로고    scopus 로고
    • Complex event extraction at PubMed scale
    • 10.1093/bioinformatics/btq180, 2881365, 20529932
    • Björne J, Ginter F, Pyysalo S, Tsujii J, Salakoski T. Complex event extraction at PubMed scale. Bioinformatics 2010, 26(12):i382-390. 10.1093/bioinformatics/btq180, 2881365, 20529932.
    • (2010) Bioinformatics , vol.26 , Issue.12
    • Björne, J.1    Ginter, F.2    Pyysalo, S.3    Tsujii, J.4    Salakoski, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.