Genome Sequence of the Cycloprodigiosin-Producing Bacterial Strain Pseudoalteromonas rubra ATCC 29570 T

Journal of Bacteriology

Volumn 194, Issue 6, 2012, Pages 1637-1638

  Xie, Bin Bin ^a,b   Qin, Yan Li Shu ^a   Rong, Jin Cheng ^a   Zhang, Xi Ying ^a   Chen, Xiu Lan ^a   Zhou, Bai Cheng ^a   Zhang, Yu Zhong ^a  

^a SHANDONG UNIVERSITY   (China)

^b Shandong University   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOPRODIGIOSIN; PRODIGIOSIN; UNCLASSIFIED DRUG;

BACTERIAL STRAIN; BIOSYNTHESIS; GENE CLUSTER; GENE SEQUENCE; NONHUMAN; NOTE; OPEN READING FRAME; PRIORITY JOURNAL; PSEUDOALTEROMONAS; PSEUDOALTEROMONAS RUBRA ATCC 29570; SEQUENCE HOMOLOGY;

BIOSYNTHETIC PATHWAYS; DNA, BACTERIAL; GENOME, BACTERIAL; INDOLES; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PSEUDOALTEROMONAS; PYRROLES; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); PSEUDOALTEROMONAS RUBRA;

EID: 84863229389     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.06822-11     Document Type: Note

References (17)

1. Bennett S. 2004. Solexa Ltd. Pharmacogenomics 5:433- 438.
2. Bowman JP. 2007. Bioactive compound synthetic capacity and ecological significance of marine bacterial genus Pseudoalteromonas. Mar. Drugs 5:220 -241.
3. Coco EA, Narva KE, Feitelson JS. 1991. New classes of Streptomyces coelicolor A3(2) mutants blocked in undecylprodigiosin (Red) biosynthesis. Mol. Gen. Genet. 227:28 -32.
4. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673- 679.
5. Feitelson JS, Hopwood DA. 1983. Cloning of a Streptomyces gene for an O-methyltransferase involved in antibiotic biosynthesis. Mol. Gen. Genet. 190:394 -398.
6. Feitelson JS, Malpartida F, Hopwood DA. 1985. Genetic and biochemical characterization of the red gene cluster of Streptomyces coelicolor A3(2). J. Gen. Microbiol. 131:2431-2441.
7. Feitelson JS, Sinha AM, Coco EA. 1986. Molecular genetics of Red biosynthesis in Streptomyces. J. Nat. Prod. 49:988 -994.
8. Gerber NN, Gauthier MJ. 1979. New prodigiosin-like pigment from Alteromonas rubra. Appl. Environ. Microbiol. 37:1176 -1179.
9. Harris AK, et al. 2004. The Serratia gene cluster encoding biosynthesis of the red antibiotic, prodigiosin, shows species- and strain-dependent genome context variation. Microbiology 150:3547-3560.
10. Jeong H, et al. 2005. Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent. Nucleic Acids Res. 33:7066 -7073.
11. Kawauchi K, et al. 1997. A possible immunosuppressant, cycloprodigiosin hydrochloride, obtained from Pseudoalteromonas denitrificans. Biochem. Biophys. Res. Commun. 237:543-547.
12. Li R, et al. 2010. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20:265-272.
13. Malpartida F, Niemi J, Navarrete R, Hopwood DA. 1990. Cloning and expression in a heterologous host of the complete set of genes for biosynthesis of the Streptomyces coelicolor antibiotic undecylprodigiosin. Gene 93:91-99.
14. Ogata H, et al. 1999. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 27:29 -34.
15. Rudd BA, Hopwood DA. 1980. A pigmented mycelial antibiotic in Streptomyces coelicolor: control by a chromosomal gene cluster. J. Gen. Microbiol. 119:333-340.
16. Williamson NR, Fineran PC, Leeper FJ, Salmond GP. 2006. The biosynthesis and regulation of bacterial prodiginines. Nat. Rev. Microbiol. 4:887- 899.
17. Williamson NR, et al. 2005. Biosynthesis of the red antibiotic, prodigiosin, in Serratia: identification of a novel 2-methyl-3-n-amyl-pyrrole (MAP) assembly pathway, definition of the terminal condensing enzyme, and implications for undecylprodigiosin biosynthesis in Streptomyces. Mol. Microbiol. 56:971-989.