Lipidomic profiling and discovery of lipid biomarkers in snow alga Chlamydomonas nivalis under salt stress

European Journal of Lipid Science and Technology

Volumn 114, Issue 3, 2012, Pages 253-265

  Lu, Na ^a   Wei, Dong ^a   Chen, Feng ^a,b   Yang, Shang Tian ^a,c  

^a SOUTH CHINA UNIVERSITY OF TECHNOLOGY   (China)

^b PEKING UNIVERSITY   (China)

^c Ohio State University   (United States)

Author keywords

Biomarker; Chlamydomonas nivalis; Lipidomic; Multivariate statistical analysis; Salt stress; UPLC Q TOF MS

Indexed keywords

ALGAE; CHLAMYDOMONAS; CHLAMYDOMONAS NIVALIS;

EID: 84863229273     PISSN: 14387697     EISSN: 14389312     Source Type: Journal    
DOI: 10.1002/ejlt.201100248     Document Type: Article

References (54)

1. Roberts, L. D., McCombie, G., Titman, C. M., Griffin, J. L., A matter of fat: An introduction to lipidomic profiling methods. J. Chromatogr. B 2008, 871, 174-181.
2. Hazel, J. R., Williams, E. E., The role of alterations in membrane lipid composition in enabling physiological adaptation of organisms to their physical environment. Prog. Lipid Res. 1990, 29, 167-227.
3. Sajbidor, J., Effect of some environmental factors on the content and composition of microbial membrane lipids. Crit. Rev. Biotechnol. 1997, 17, 87-103.
4. Chihib, N. E., Tierny, Y., Mary, P., Hornez, J. P., Adaptational changes in cellular fatty acid branching and unsaturation of Aeromonas species as a response to growth temperature and salinity. Int. J. Food Microbiol. 2005, 102, 113-119.
5. Xu, Y. N., Wang, Z. N., Yan, X. J., Lin, W. et al., Positional distribution of fatty acids on the glycerol backbone during the biosynthesis of glycerolipids in Ectocarpus fasciculatus. Chin. Sci. Bull. 2002, 47, 1802-1806.
6. DeLong, C. J., Baker, P. R., Samuel, M., Cui, Z., Thomas, M. J., Molecular species composition of rat liver phospholipids by ESI-MS/MS: The effect of chromatography. J. Lipid Res. 2001, 42, 1959-1968.
7. Han, X. L., Gross, R. W., Global analyses of cellular lipidomes directly from crude extracts of biological samples by ESI mass spectrometry: A bridge to lipidomics. J. Lipid Res. 2003, 44, 1071-1079.
8. Watson, A. D., Lipidomics: A global approach to lipid analysis in biological systems. J. Lipid Res. 2006, 47, 2101-2111.
9. Welti, R., Shah, J., Li, W. Q., Li, M. Y. et al., Plant lipidomics: Discerning biological function by profiling plant complex lipids using mass spectrometry. Front. Biosci. 2007, 12, 2494-2506.
10. Nicolaou, A., Peng, Y. H., Lipidomics: Current developments, challenges and opportunities. Lipid Technol. 2006, 18, 53-57.
11. Gross, R. W., Han, X., Lipidomics at the interface of structure and function in systems biology. Chem. Biol. 2011, 18, 284-291.
12. Wenk, M. R., Lipidomics: New tools and applications. Cell 2010, 143, 888-895.
13. O'Connor, D., Mortishire-Smith, R., High-throughput bioanalysis with simultaneous acquisition of metabolic route data using ultra performance liquid chromatography coupled with time-of-flight mass spectrometry. Anal. Bioanal. Chem. 2006, 385, 114-121.
14. Toh, D., New, L., Koh, H., Chan, E. C., Ultra-high performance liquid chromatography/time-of-flight mass spectrometry (UHPLC/TOFMS) for time-dependent profiling of raw and steamed Panax notoginseng. J. Pharm. Biomed. 2010, 52, 43-50.
15. Trygg, J., Holmes, E., Lundstedt, T., Chemometrics in metabonomics. J. Proteome Res. 2007, 6, 469-479.
16. Orešič, M., Bioinformatics and computational approaches applicable to lipidomics. Eur. J. Lipid Sci. Technol. 2009, 111, 99-106.
17. Wiklund, S., Johansson, E., Sjostrom, L., Mellerowicz, E. J. et al., Visualization of GC/TOF-MS-based metabolomics data for identification of biochemically interesting compounds using OPLS class models. Anal. Chem. 2008, 80, 115-122.
18. Hu, C. X., van der Heijden, R., Mei, W., van der Greef, J. et al., Analytical strategies in lipidomics and applications in disease biomarker discovery. J. Chromatogr. B 2009, 877, 2836-2846.
19. Navas-Iglesias, N., Carrasco-Pancorbo, A., Cuadros-Rodríguez, L., From lipids analysis towards lipidomics, a new challenge for the analytical chemistry of the 21st century. Part II: Analytical lipidomics. Trends Anal. Chem. 2009, 28, 393-403.
20. Orešič, M., Metabolomics, a novel tool for studies of nutrition, metabolism and lipid dysfunction. Nutr. Metab. Cardiovas. 2009, 19, 816-824.
21. Postle, A. D., Phospholipid lipidomics in health and disease. Eur. J. Lipid Sci. Technol. 2009, 111, 2-13.
22. Kawecka, B., Bert, G. D., Biology and ecology of snow algae. 1. the sexual reproduction of Chlamydomonas nivalis (Bauer) Wille (Chlorophyta, Volvocales). Acta Hydrobiol. 1978, 20, 111-116.
23. Kawecka, B., Biology and ecology of snow algae 2. formation of aplanospores in Chlamydomonas nivalis (Bauer) Wille (Chlorophyta, Volvocales). Acta Hydrobiol. 1981, 23, 211-215.
24. Grinde, B., Vertical distribution of the snow alga Chlamydomonas nivalis (Chlorophyta volvocates). Polar Biol. 1983, 2, 159-162.
25. Mosser, J. L., Mosser, A. G., Brock, T. D., Photosynthests in the snow: The alga Chlamydomonas nivalis (Chlorophyceae). J. Phycol. 1977, 13, 22-27.
26. Wiencke, C., Clayton, M. N., Biology of polar benthic algae introduction. Bot. Mar. 2009, 52, 479-481.
27. Kirst, G. O., Salinity tolerance of eukaryotic marine algae. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1990, 41, 21-53.
28. Hoham, R. W., Duval, B., in: Jones, H. G., Pomeroy, J. W., Walker, D. A., Hoham, R. W. (Eds.), Snow Ecology: An Interdisciplinary Examination of Snow-covered Ecosystems, Cambridge University Press, Cambridge 2001, pp. 168-228.
29. Elenkov, I., Stefanov, K., Dimitrova-Konaklieva, S., Popov, S., Effect of salinity on lipid composition of Cladophora vagabunda. Phytochemistry 1996, 42, 39-44.
30. Elkahoui, S., Smaoui, A., Zarrouk, M., Ghrir, R., Limam, F., Salt-induced lipid changes in Catharanthus roseus cultured cell suspensions. Phytochemistry 2004, 65, 1911-1917.
31. Guschina, I. A., Harwood, J. L., Lipids and lipid metabolism in eukaryotic algae. Prog. Lipid Res. 2006, 45, 160-186.
32. Takagi, M., Karseno, S., Yoshida, T., Effect of salt concentration on intracellular accumulation of lipids and triacylglyceride in marine microalgae Dunaliella cells. J. Biosci. Bioeng. 2006, 101, 223-226.
33. Chen, G. Q., Jiang, Y., Chen, F., Salt-induced alterations in lipid composition of diatom Nitzschia laevis (Bacillariophyceae) under heterotrophic culture condition. J. Phycol. 2008, 44, 1309-1314.
34. Weiss, R. L., Fine structure of the snow algae (Chlamydomonas nivalis) and associated bacteria. J. Phycol. 1983, 19, 200-204.
35. Gorton, H. L., William, E. W., Vogelmann, T. C., The light environment and cellular optics of the snow alga Chlamydomonas nivalis (Bauer) Wille. Photochem. Photobiol. 2003, 73, 611-620.
36. Remias, D., Lütz-Meindl, U., Lütz, C., Photosynthesis, pigments and ultrastructure of the alpine snow alga Chlamydomonas nivalis. Eur. J. Phycol. 2005, 40, 259-268.
37. Bligh, E. G., Dyer, W. J., A rapid method of total lipid extraction and purification. Can. J. Biochem. Physiol. 1959, 37, 911-917.
38. 1H nuclear magnetic resonance (NMR) metabolomics approach combined with orthogonal projections to latent structure-discriminant analysis as an efficient tool for discriminating between Korean and Chinese herbal medicines. J. Agric. Food. Chem. 2008, 56, 11589-11595.
39. Ni, Y., Su, M. M., Lin, J. C., Wang, X. Y. et al., Metabolic profiling reveals disorder of amino acid metabolism in four brain regions from a rat model of chronic unpredictable mild stress. FEBS Lett. 2008, 582, 2627-2636.
40. Xu, J. L., Chen, D. Y., Yan, X. J., Chen, J. J., Zhou, C. X., Global characterization of the photosynthetic glycerolipids from a marine diatom Stephanodiscus sp. by ultra performance liquid chromatography coupled with electrospray ionization-quadrupole-time of flight mass spectrometry. Ana. Chim. Acta 2010, 663, 60-68.
41. Roche, S. A., Leblond, J. D., Betaine lipids in chlorarachniophytes. Phycol. Res. 2010, 58, 298-305.
42. Yan, X. J., Li, H. Y., Xu, J. L., Zhou, C. X., Analysis of phospholipids in microalga Nitzschia closterium by UPLC-Q-TOF-MS. Chin. J. Oceanol. Limnol. 2010, 28, 106-112.
43. Pulfer, M., Murphy, R. C., Electrospray mass spectometry of phospholipids. Mass spectrom. Rev. 2003, 22, 332-364.
44. Haigh, W. G., Yoder, T. F., Ericson, L., Pratum, T., Winget, R. R., The characterisation and cyclic production of a highly unsaturated homoserine lipid in Chlorella minutissima. Biochim. Biophys. Acta 1996, 1299, 183-190.
45. Guella, G., Frassanito, R., Mancini, I., A new solution for an old problem: The regiochemical distribution of the acyl chains in galactolipids can be established by electrospray ionization tandem mass spectrometry. Rapid Commun. Mass Spectrom. 2003, 17, 1982-1994.
46. Arisz, S. A., Valianpour, F., van Gennip, A. H., Munnik, T., Substrate preference of stress-activated phospholipase D in Chlamydomonas and its contribution to PA formation. Plant J. 2003, 34, 595-604.
47. Vogel, G., Eichenberger, W., Betaine lipids in lower plants. Biosynthesis of DGTS and DGTA in Ochromonas danica (Chrysophyceae) and the possible role of DGTS in lipid metabolism. Plant Cell Physiol. 1992, 33, 427-436.
48. Kuiper, P. J. C., in: Siegenthaler, P. A., Eichenberger, W. (Eds.), Structure, Function and Metabolism of Plant Lipids, Elsevier, New York 1984, pp. 525-530.
49. Dubertret, G., Gerard-Hirne, C., Trémolières, A., Importance of trans-delta(3)-hexadecenoic acid containing phosphatidylglycerol in the formation of the trimeric light-harvesting complex in Chlamydomonas. Plant Physiol. Biochem. 2002, 40, 829-836.
50. Hamed, K. B., Youssef, N. B., Ranieri, A., Zarrouk, M., Abdelly, C., Changes in content and fatty acid profiles of total lipids and sulfolipids in the halophyte Crithmum maritimum under salt stress. J. Plant Physiol. 2005, 16, 599-602.
51. Minoda, A., Sonoike, K., Okada, K., Sato, N., Tsuzuki, M., Decrease in the efficiency of the electron donation to tyrosine Z of photosystem II in an SQDG-deficient mutant of Chlamydomonas. FEBS Lett. 2003, 553, 109-112.
52. Holzl, G., Dormann, P., Structure and function, of glycoglycerolipids in plants and bacteria. Prog. Lipid Res. 2007, 46, 225-243.
53. Corvera, S., D'Arrigo, A., Stenmark, H., Phosphoinositides in membrane traffic. Curr. Opin. Cell Biol. 1999, 11, 460-465.
54. Darwish, E., Testerink, C., Khalil, M., El-Shihy, O., Munnik, T., Phospholipid signaling responses in salt-stressed rice leaves. Plant Cell Physiol. 2009, 50, 986-997.