Cellulases for biomass conversion

Industrial Enzymes: Structure, Function and Applications

Volumn , Issue , 2007, Pages 35-50

  Xu, Qi ^a   Adney, William S ^a   Ding, Shi You ^a   Michael, Himmel E ^a  

^a NATIONAL RENEWABLE ENERGY LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84863205916     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/1-4020-5377-0_3     Document Type: Chapter

References (72)

1. Abuja, P.M., Schmuck, M., Pilz, I., Tomme, P., Claeyssens, M. (1988a) Structural and functional domains of cellobiohydrolase I from T. reesei - a Small-Angle X-Ray-Scattering Study of the Intact Enzyme and Its Core. Eur. Biophys. J. 15, 339-342.
2. Abuja, P.M., Pilz, I., Claeyssens, M. and Tomme, P. (1988b) Domain structure of cellobiohydrolase II as studied by small angle X-ray scattering: close resemblance to cellobiohydrolase I. Biochem. Biophys. Res. Commun. 156, 180-185.
3. Baker, J.O., Ehrman, C.I., Adney, W.S., Thomas, S.R., Himmel, M.E. (1998) Hydrolysis of cellulose using ternary mixtures of purified cellulases. Appl. Biochem. Biotechnol. 70/72, 395-403.
4. de Bary, A. (1886) Ueber einige sclerotinien und sclerotienkrankheiten. Bot. Zeit. XLIV: 377.
5. Bayer, E.A., Morag, E. and Lamed, R. (1994) The cellulosome - a treasure-trove for biotechnology. Trends in Biotechnology 12, 378-386.
6. Bayer, E.A., Ding, S.-Y., Mechaly, A., Shoham, Y. and Lamed, R. (1999) Emerging phylogenetics of cellulosome structure, In Recent Advances In Carbohydrate Bioengineering, Gilbert, H.J., Davies, G, Henrissat, B., Svensson, B. (Eds), The Royal Society of Chemistry, Cambridge, p. 189-201.
7. Bayer, E.A., Belaich, J.P., Shoham, Y. and Lamed, R. (2004) The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides. Annual Review of Microbiology 58, 521-554.
8. Boraston, A.B., Notenboom, V., Warren, R.A., Kilburn, D.G., Rose, D. R. and Davies, G. (2003) Structure and ligand binding of carbohydrate-binding module csCBM6-3 reveals similarities with fucose-specific lectins and "galactose-binding" domains. J. Mol. Biol. 327(3):659-669.
9. Boraston, A.B., Bolam, D.N., Gilbert, H.J. and Davies, G.J. (2004) Carbohydrate-binding modules: fine-tuning polysaccharide recognition. Biochem. J. 382, 769-781.
10. Brandt, D., Hontz, L. and Mandels, M. (1973) Engineering aspects of the enzymatic conversion of waste cellulose to glucose. AIChE Symposium Series 69, 127.
11. Brown, H.T., and Morris, G.H. (1890). Researches on the germination of some of the Graminae. J. Chem. Soc. Lond. 57, 458-528.
12. Claeyssens, M., Tilbeurgh, H.V., Tomme, P., Wood, T.M. and McCrae, S. I. (1989) Fungal Cellulase Systems: Comparison of the specificities of the cellobiohydrolases isolated from Penicillium pinophilum and Trichoderma reesei. Biochem. J. 261, 819-826.
13. Claeyssens, M. and Tomme, P. (1990) In Kubicek, C. P., Eveleigh, D. E., Esterbauer, H., Steiner, W. and Kubicek-Pranz, E.M. (Eds.), Trichoderma reesei Cellulases: Biochemistry, Genetics, Physiology and Application, London, the Royal Society of Chemistry, pp. 1-11.
14. Coughlan, M.P., Moloney, A.P., McCrae, S.I. and Wood, T.M. (1987) Cross-synergistic interactions between components of the cellulase systems of Talaromyces emersonii, Fusarium solani, Penicillium funiculosum, and Trichoderma koningii. Biochem. Soc. Transactions 15, 263-264.
15. Coutinho, P.M. and Henrissat, B. (1999) Carbohydrate-active enzymes: an integrated database approach. In Recent Advances in Carbohydrate Bioengineering, Gilbert, H.J., Davies, G., Henrissat, B. and B. Svensson (eds.), The Royal Society of Chemistry, Cambridge, pp. 3-12.
16. Ding, S.-Y., Rincon, M.T., Lamed, R., Martin, J.C., McCrae, S.I., Aurilia, V., Shoham, Y., Bayer, E.A. and Flint, H.J. (2001) Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens. J. Bacteriol. 183, 1945-1953.
17. Efimov, A.V. (1994) Favoured structural motifs in globular proteins. Structure 2, 999-1002.
18. Eriksson, K.E. (1975) Enzyme mechanisms involved in the degradation of wood components. In Bailey, M., Enari T.M. and Linko, M. (Eds.), Symposium on Enzymatic Hydrolysis of Cellulose. Helsinki, SITRA, p. 263.
19. Eveleigh, D.E. (1987) Cellulases: A perspective. Phil. Trans. Roy. Soc. Lond., A321:435-447.
20. Fägerstam, L. G. and Pettersson, L. G. (1980) The 1,4-α-glucan cellobiohydrolases of T. reesei QM 9414. A new type of cellulolytic synergism. FEBS Lett. 119, 97.
21. Fierobe, H.P., Mechaly, A., Tardif, C., Belaich, A., Lamed, R., Shoham, Y., Belaich, J.P. and Bayer, E.A. (2001) Design and production of active cellulosome chimeras: selective incorporation of dockerincontaining enzymes into defined functional complexes. J. Biol. Chem. 276, 21257-21261.
22. Fujino, T., Karita, S. and Ohmiya, K. (1993) Nucleotide-sequences of the celB gene encoding endo- 1,4-beta-glucanase-2, Orf1 and Orf2 forming a putative cellulase gene-cluster of Clostridium josui. J. Ferment. and Bioeng. 76(4):243-250.
23. Gerngross, U.T., Romaniec, M.P. M., Kobayashi, T., Huskisson, N.S. and Demain, A.L. (1993) Sequencing of a Clostridium thermocellum gene (cipA) encoding the cellulosomal S(L)-protein reveals an unusual degree of internal homology. Mol. Microbiol. 8(2):325-334.
24. Gilligan, W. and Reese, E.T. (1954) Evidence for multiple components in microbial cellulases. Can. J. Microbiol. 1, 90.
25. Grohmann, K., Wyman, C.E. and Himmel, M.E. (1991) Potential for fuels from biomass and wastes. In Rowell, R., Narayan, R. and Schultz, T. (eds), Emerging Materials and Chemicals from Biomass. ACS Series 476, 354-392.
26. Halliwell, G. and Riaz, M. (1970) The formation of short fibres from native cellulose by components of Trichoderma koningii cellulase. Biochem. J. 116, 35-42.
27. Harris, N.L., Presnell, S.R. and Cohen, F.E. (1994) Four helix bundle diversity in globular proteins. J. Mol. Biol. 236, 1356-1368.
28. Irwin, D.C., Spezio, M., Walker, L.P. and Wilson, D.B. (1993) Activity studies of eight purified cellulases: specificity, synergism, and binding domain effects. Biotech. Bioeng. 42, 1002-1013.
29. King, K.W. and Vessal M.I. (1969) Enzymes of the cellulase complex. In Hajny, G. J. And Reese E. T. (eds), Cellulases And Their Applications. Advances in Chemistry Series 95, 7-25.
30. Kosugi, A., Murashima, K., Tamaru, Y. and Doi R.H. (2002) Cell-surface-anchoring role of N-terminal surface layer homology domains of Clostridium cellulovorans enge. J. Bacteriol. 184(4): 884-888.
31. Kraulis, J., Clore, G.M., Nilges, M., Jones, T.A., Pettersson, G., Knowles, J. and Gronenborn, A.M. (1989) Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing. Biochemistry 28, 7241-7257.
32. Lamed, R., Setter, E. and Bayer, E.A. (1983) Characterization of a cellulose-binding, cellulase-containing complex in Clostridium thermocellum. J. Bacteriol. 156, 828-836.
33. Lamed, R. and Bayer, E.A. (1988) The cellulosome of Clostridium thermocellum. Adv. Appl. Microbiol. 33, 1-46.
34. Levitt, M. and Chothia, C. (1976) Structural patterns in globular proteins. Nature 261, 552-557.
35. Li, H., Flora, R.M. and King, K.W. (1965) Individual roles of cellulase components derived from Trichoderma viride. Arch. Biochem. Biophys. 111, 439-447.
36. Mandels, M. and Reese E.T. (1964) Fungal cellulases and the microbial decomposition of cellulosic fabric. Develop. Indust. Microbiol. 5, 5-20.
37. Mandels, M., Weber, J. and Parizek, R. (1971) Enhanced cellulase production by a mutant of Trichoderma viride. Appl. Microbiol. 21, 152.
38. McHale, A. and Coughlan, M.P. (1980) Synergistic hydrolysis of cellulose by components of the extracellular cellulase system of Talaromyces emersonii. FEBS Lett. 117, 319.
39. Mechaly, A., Fierobe, H.P., Belaich, A., Belaich, J.P., Lamed, R., Shoham, Y. and Bayer, E.A. (2001) Cohesin-dockerin interaction in cellulosome assembly. A single hydroxyl group of a dockerin domain distinguishes between nonrecognition and high affinity recognition. J. Biol. Chem. 276(22):19678-19678.
40. Mitchinson, C. (2005) Genencor's (Genencor International, Inc., Palo Alto, CA) Perspective on the Key Barriers to Commercializing Biofuels at the 27th Symposium on Biotechnology for Fuels and Chemicals, Denver, May 2.
41. Montenecourt, B.S. and Eveleigh, D. E. (1979) Selective screening methods for the isolation of high yielding cellulase mutants of Trichoderma reesei. In: Hydrolysis of cellulose: Mechanism of Enzymatic and Acid Catalysis, Advances in Chemistry Series 181, 289-301.
42. Morris, B. (1890) The germination of some of the gramineae. J. Chem. Soc. Lond. 57, 497.
43. Newcombe, F.C. (1899) Cellulose-Enzymes. Annal. Bot. XIII, No. XLIX:49-81.
44. Notenboom, V., Boraston, A.B., Kilburn, D.G. and Rose, D.R. (2001) Crystal structures of the family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A in native and ligand-bound forms. Biochemistry 40(21):6248-6256.
45. Orengo, C.A. and Thornton, J.M. (1993) Alpha plus beta folds revisited: some favoured motifs. Structure 1, 105-120.
46. Orengo, C.A., Jones, D.T. and Thornton, J.M. (1994) Protein superfamilles and domain superfolds. Nature 372, 631-634.
47. Petterson, L. G. (1975) The mechanism of enzymatic hydrolysis of cellulose. In Bailey, M., Enari, T.M. and Linko, M. (eds), Symposium on Enzymatic Hydrolysis of Cellulose. Helsinki, Finland, SITRA, pp. 255.
48. Pringsheim, H. (1912) Uber den fermentativen abbau der cellulose. Zeitschrift fuer physiologische Chemie 78, 266-291.
49. Reese, E.T., Siu, R.G.H. and Levinson, H.S. (1950) The biological degradation of soluble cellulose derivatives and its relationship to the mechanism of cellulose hydrolysis. J. Bacteriol. 59, 485.
50. Reinitzer, F. (1897) Ueber das zellwandlosende enzym der gerste. Hoppe-Seyler's Zeitschrift fur Physiologische Chemie 23, 175-208.
51. Rincon, M. T., McCrae, S.I., Kirby, J., Scott, K.P. and Flint, H.J. (2001) Endb, A multidomain family 44 cellulase from Ruminococcus flavefaciens 17, binds to cellulose via a novel cellulose-binding module and to another R-flavefaciens protein via a dockerin domain. Appl. Environ. Microbiol. 67(10): 4426-4431.
52. Rouvinen, J., Bergfors, T., Teeri, T, Knowles, J. K. and Jones, T. A. (1990) Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei. Science 249, 380-386.
53. Sakon, J., Irwin, D., Wilson, D.B. and Karplus, A. (1997) Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca. Nature Struct. Biol. 4(10):810-818.
54. Salamitou, S., Tokatlidis, K., Beguin, P. and Aubert J.P. (1992) Involvement of separate domains of the cellulosomal protein-S1 of Clostridium thermocellum in binding to cellulose and in anchoring of catalytic subunits to the cellulosome. Febs Letters 304(1):89-92.
55. Selby, K. (1969) The purification and properties of the C1-component of the cellulase complex. In Hajny, G. J. and Reese, E. T. (eds), Cellulases and Their Applications. Advances in Chemistry Series 95, 34-50.
56. Sigurskjold, B.W., Svensson, G.B. and Driguez, H (1994) Thermodynamics of ligand binding to the starch-binding domain of glucoamylase from Aspergillus niger. Eur. J. Biochem. 225(1):133-41.
57. Simpson, P.J., Xie, H.-F., Bolam, D.N., Gilbert, H.J. and Williamson, M.P. (2000) The structural basis for the ligand specificity of family 2 carbohydrate-binding modules. J. Biol. Chem. 275(52):41137-42.
58. Shoseyov, O., Takagi, M., Goldstein, M.A. and Doi, R.H. (1992) Primary sequence-analysis of Clostridium cellulovorans cellulose binding protein-A. Proc. Nat. Acad. Sci. USA 89(8):3483-3487.
59. Sorimachi, K., Jacks, A.J., Le Gal-Coeffect, M.-F., Williamson, G., Archer, D.B. and Willamson, M.P. (1996) Solution structure of the granular starch binding domain of glucoamylase from Aspergillus niger by nuclear magnetic resonance spectroscopy. J. Mol. Biol. 259(5):970-87.
60. Sorimachi, K., Le Gal-Coeffect, M. F., Williamson, G., Archer, D.B. and Williamson M.P. (1997) Solution structure of the granular starch binding domain of Aspergillus niger glucoamylase bound to beta-cyclodextrin. Structure 5(5):647-61.
61. Teeri, T.T. (1994) Hydrolysis of crystalline cellulose by native and engineered Trichoderma reesei cellulases. In Proceedings: The Symposium on Enzymic Degradation of Insoluble Polysaccharides, the 1994 Annual American Chemical Society Meeting, San Diego, CA.
62. Williamson, M.P., Le Gal-Coeffect, M.F., Sorimachi, K., Furniss, C.S.M., Archer, D.B. and Williamson, G. (1997) Function of conserved tryptophans in the Aspergillus niger glucoamylase 1 starch binding domain. Biochemistry 36(24):7535-9.
63. Wood, T.M. (1969) The cellulase of Fusarium solani, resolution of the enzyme complex. Biochem. J. 115, 457.
64. Wood, T.M. (1988) Cellulase of Trichoderma koningii. Methods Enzymol. 160, 221-234.
65. Wood, T.M. and McCrae, S.I. (1977) Cellulase from Fusarium solani purification and properties of the C-1 component. Carbohydr. Res. 57, 117-133.
66. Wood, T.M. and McCrae, S.I. (1979) Synergism between enzymes involved in the solubilization of native cellulose. Brown, R.D. and Jurasek, L. (eds), Hydrolysis Of Cellulose: Mechanism Of Enzymatic And Acid Catalysis, Advances in Chemistry Series 181, 181-209.
67. Woodward, J., Affholter, K.A., Kandy K., Noles, K.K., Troy, N.T. and Gaslightwala, S.F. (1992) Does cellobiohydrolase II core protein from Trichoderma reesei disperse cellulose macrofibrils? Enzyme and Microbial Technology 14, 625-630.
68. Wooley R. and Ruth M. (1999) Conversion Of Hardwood Biomass To Ethanol Via Dilute Acid Cocurrent Prehydrolysis And Enzymatic SSCF - Process Design And Economics: Proceedings for the 21st Symposium on Biotechnology for Fuels and Chemicals, 6-04 Fort Collins, CO, May 2-6.
69. Perlack, R.D., Wright, L.L., Turhollow, A.F., Graham, R.L., Stokes, B.J. and Erbach, D.C. (2005) Biomass as feedstock for a bioenergy and bioproducts industry: the technical feasibility of a billion-ton annual supply", DOE Office of Energy Efficiency and Renewable Energy, Office of Biomass Program and the USDA Agriculture Research Service. http://feedstockreview.ornl.gov/pdf/ billion-ton-vision.pdf
70. Xie, H.-F., Gilbert, H.J., Charnock, S.J., Davies, G.J., Willamson, M.P., Simpson, P.J., Raghotthama, S., Fontes, C.M. G.A., Dias, F.M.V., Ferreira, L.M.A. and Bolam, D.N. (2001) Clostridium thermocellum Xyn10B carbohydrate-binding module 22-2: the role of conserved amino acids in ligand binding. Biochemistry 40(31), 9167-9176.
71. Xu, Q., Bayer, E.A., Goldman, M., Kenig, R., Shoham, Y. and Lamed, R. (2004a) Architecture of the Bacteroides cellulosolvens cellulosome: description of a cell surface-anchoring scaffoldin and a family 48 cellulase. J. Bacteriol. 186, 968-977.
72. Xu, Q., Barak, Y., Kenig, R., Shoham, Y., Bayer, E.A. and Lamed, R. (2004b) A novel Acetivibrio cellulolyticus anchoring scaffoldin that bears divergent cohesins. J. Bacteriol. 186, 5782-5789.