Phosphorylation of FAR-RED ELONGATED HYPOCOTYL1 is a key mechanism defining signaling dynamics of phytochrome a under red and far-red light in Arabidopsis

Plant Cell

Volumn 24, Issue 5, 2012, Pages 1907-1920

  Chen, Fang ^a,c   Shi, Xiarong ^c   Chen, Liang ^a,d   Dai, Mingqiu ^a   Zhou, Zhenzhen ^a   Shen, Yunping ^a,b,e   Li, Jigang ^a,b   Li, Gang ^a,f   Wei, Ning ^a   Denga, XingWang ^b  

^a YALE UNIVERSITY   (United States)

^b PEKING UNIVERSITY   (China)

^c YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d SHANGHAI AGROBIOLOGICAL GENE CENTER   (China)

^e UNIVERSITY OF CALIFORNIA   (United States)

^f SHANDONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84863097538     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.112.097733     Document Type: Article

References (43)

1. Barnes, S.A., Nishizawa, N.K., Quaggio, R.B., Whitelam, G.C., and Chua, N.H. (1996). Far-red light blocks greening of Arabidopsis seedlings via a phytochrome A-mediated change in plastid development. Plant Cell 8: 601-615.
2. Bracha-Drori, K., Shichrur, K., Katz, A., Oliva, M., Angelovici, R., Yalovsky, S., and Ohad, N. (2004). Detection of protein-protein interactions in plants using bimolecular fluorescence complementation. Plant J. 40: 419-427.
3. Chiu, W., Niwa, Y., Zeng, W., Hirano, T., Kobayashi, H., and Sheen, J. (1996). Engineered GFP as a vital reporter in plants. Curr. Biol. 6: 325-330.
4. Clough, R.C., and Vierstra, R.D. (1997). Phytochrome degradation. Plant Cell Environ. 20: 713-721.
5. Debrieux, D., and Fankhauser, C. (2010). Light-induced degradation of phyA is promoted by transfer of the photoreceptor into the nucleus. Plant Mol. Biol. 73: 687-695.
6. Desnos, T., Puente, P., Whitelam, G.C., and Harberd, N.P. (2001). FHY1: A phytochrome A-specific signal transducer. Genes Dev. 15: 2980-2990.
7. Fankhauser, C., and Casal, J.J. (2004). Phenotypic characterization of a photomorphogenic mutant. Plant J. 39: 747-760.
8. Ferrer, J.L., Austin, M.B., and Stewart, C. Jr., and Noel, J.P. (2008). Structure and function of enzymes involved in the biosynthesis of phenylpropanoids. Plant Physiol. Biochem. 46: 356-370.
9. Genoud, T., Schweizer, F., Tscheuschler, A., Debrieux, D., Casal, J.J., Schäfer, E., Hiltbrunner, A., and Fankhauser, C. (2008). FHY1 mediates nuclear import of the light-activated phytochrome A photoreceptor. PLoS Genet. 4: e1000143.
10. Guo, L., Zhou, J., Elling, A.A., Charron, J.B., and Deng, X.W. (2008). Histone modifications and expression of light-regulated genes in Arabidopsis are cooperatively influenced by changing light conditions. Plant Physiol. 147: 2070-2083.
11. Hellens, R.P., Allan, A.C., Friel, E.N., Bolitho, K., Grafton, K., Templeton, M.D., Karunairetnam, S., Gleave, A.P., and Laing, W.A. (2005). Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants. Plant Methods 1: 13-26.
12. Hiltbrunner, A., Tscheuschler, A., Viczián, A., Kunkel, T., Kircher, S., and Schäfer, E. (2006). FHY1 and FHL act together to mediate nuclear accumulation of the phytochrome A photoreceptor. Plant Cell Physiol. 47: 1023-1034.
13. Hiltbrunner, A., Viczián, A., Bury, E., Tscheuschler, A., Kircher, S., Tóth, R., Honsberger, A., Nagy, F., Fankhauser, C., and Schäfer, E. (2005). Nuclear accumulation of the phytochrome A photoreceptor requires FHY1. Curr. Biol. 15: 2125-2130.
14. Kim, J., Yi, H., Choi, G., Shin, B., Song, P.S., and Choi, G. (2003). Functional characterization of phytochrome interacting factor 3 in phytochrome-mediated light signal transduction. Plant Cell 15: 2399-2407.
15. Kim, L., Kircher, S., Toth, R., Adam, E., Schäfer, E., and Nagy, F. (2000). Light-induced nuclear import of phytochrome-A:GFP fusion proteins is differentially regulated in transgenic tobacco and Arabidopsis. Plant J. 22: 125-133.
16. Kircher, S., Gil, P., Kozma-Bognár, L., Fejes, E., Speth, V., Husselstein-Muller, T., Bauer, D., Adám, E., Schäfer, E., and Nagy, F. (2002). Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm. Plant Cell 14: 1541-1555.
17. Kwok, S.F., Staub, J.M., and Deng, X.W. (1999). Characterization of two subunits of Arabidopsis 19S proteasome regulatory complex and its possible interaction with the COP9 complex. J. Mol. Biol. 285: 85-95.
18. Lee, J., He, K., Stolc, V., Lee, H., Figueroa, P., Gao, Y., Tongprasit, W., Zhao, H., Lee, I., and Deng, X.W. (2007). Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell 19: 731-749.
19. Lin, R., Ding, L., Casola, C., Ripoll, D.R., Feschotte, C., and Wang, H. (2007). Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 318: 1302-1305.
20. Liu, L., Zhang, Y., Tang, S., Zhao, Q., Zhang, Z., Zhang, H., Dong, L., Guo, H., and Xie, Q. (2010). An efficient system to detect protein ubiquitination by agroinfiltration in Nicotiana benthamiana. Plant J. 61: 893-903.
21. Mathews, S. (2006). Phytochrome-mediated development in land plants: Red light sensing evolves to meet the challenges of changing light environments. Mol. Ecol. 15: 3483-3503.
22. Nagatani, A. (2004). Light-regulated nuclear localization of phytochromes. Curr. Opin. Plant Biol. 7: 708-711.
23. Neff, M.M., and Van Volkenburgh, E. (1994). Light-stimulated cotyledon expansion in Arabidopsis seedlings (the role of phytochrome B). Plant Physiol. 104: 1027-1032.
24. Niwa, Y., Hirano, T., Yoshimoto, K., Shimizu, M., and Kobayashi, H. (1999). Non-invasive quantitative detection and applications of nontoxic, S65T-type green fluorescent protein in living plants. Plant J. 18: 455-463.
25. Osterlund, M.T., Hardtke, C.S., Wei, N., and Deng, X.W. (2000). Targeted destabilization of HY5 during light-regulated development of Arabidopsis. Nature 405: 462-466.
26. Oyama, T., Shimura, Y., and Okada, K. (1997). The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl. Genes Dev. 11: 2983-2995.
27. Quail, P.H. (2010). Phytochromes. Curr. Biol. 20: R504-R507.
28. Rausenberger, J., Tscheuschler, A., Nordmeier, W., Wüst, F., Timmer, J., Schäfer, E., Fleck, C., and Hiltbrunner, A. (2011). Photoconversion and nuclear trafficking cycles determine phytochrome A's response profile to far-red light. Cell 146: 813-825.
29. Sharrock, R.A., and Clack, T. (2002). Patterns of expression and normalized levels of the five Arabidopsis phytochromes. Plant Physiol. 130: 442-456.
30. Shen, Y., Feng, S., Ma, L., Lin, R., Qu, L.J., Chen, Z., Wang, H., and Deng, X.W. (2005). Arabidopsis FHY1 protein stability is regulated by light via phytochrome A and 26S proteasome. Plant Physiol. 139: 1234-1243.
31. Shen, Y., Zhou, Z., Feng, S., Li, J., Tan-Wilson, A., Qu, L.J., Wang, H., and Deng, X.W. (2009). Phytochrome A mediates rapid red lightinduced phosphorylation of Arabidopsis FAR-RED ELONGATED HYPOCOTYL1 in a low fluence response. Plant Cell 21: 494-506.
32. Shin, J., Park, E., and Choi, G. (2007). PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis. Plant J. 49: 981-994.
33. Tepperman, J.M., Hudson, M.E., Khanna, R., Zhu, T., Chang, S.H., Wang, X., and Quail, P.H. (2004). Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling deetiolation. Plant J. 38: 725-739.
34. Tepperman, J.M., Hwang, Y.S., and Quail, P.H. (2006). phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation. Plant J. 48: 728-742.
35. Van Buskirk, E.K., Decker, P.V., and Chen, M. (2012). Photobodies in light signaling. Plant Physiol. 158: 52-60.
36. Whitelam, G.C., Johnson, E., Peng, J., Carol, P., Anderson, M.L., Cowl, J.S., and Harberd, N.P. (1993). Phytochrome A null mutants of Arabidopsis display a wild-type phenotype in white light. Plant Cell 5: 757-768.
37. Xu, Y., Parks, B.M., Short, T.W., and Quail, P.H. (1995). Missense mutations define a restricted segment in the C-terminal domain of phytochrome A critical to its regulatory activity. Plant Cell 7: 1433-1443.
38. Yang, S.W., Jang, I.C., Henriques, R., and Chua, N.H. (2009). FARRED ELONGATED HYPOCOTYL1 and FHY1-LIKE associate with the Arabidopsis transcription factors LAF1 and HFR1 to transmit phytochrome A signals for inhibition of hypocotyl elongation. Plant Cell 21: 1341-1359.
39. Zeidler, M., Zhou, Q., Sarda, X., Yau, C.P., and Chua, N.H. (2004). The nuclear localization signal and the C-terminal region of FHY1 are required for transmission of phytochrome A signals. Plant J. 40: 355-365.
40. Zhang, H., He, H., Wang, X., Wang, X., Yang, X., Li, L., and Deng, X.W. (2011). Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and posttranscriptional regulation. Plant J. 65: 346-358.
41. Zhang, Y., Feng, S., Chen, F., Chen, H., Wang, J., McCall, C., Xiong, Y., and Deng, X.W. (2008). Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. Plant Cell 20: 1437-1455.
42. Zhou, Q., Hare, P.D., Yang, S.W., Zeidler, M., Huang, L.F., and Chua, N.H. (2005). FHL is required for full phytochrome A signaling and shares overlapping functions with FHY1. Plant J. 43: 356-370.
43. Zhu, D., Maier, A., Lee, J.H., Laubinger, S., Saijo, Y., Wang, H., Qu, L.J., Hoecker, U., and Deng, X.W. (2008). Biochemical characterization of Arabidopsis complexes containing CONSTITUTIVELY PHOTOMORPHOGENIC1 and SUPPRESSOR OF PHYA proteins in light control of plant development. Plant Cell 20: 2307-2323.