Characterization of nipah virus from outbreaks in Bangladesh, 2008-2010

Emerging Infectious Diseases

Volumn 18, Issue 2, 2012, Pages 248-255

  Lo, Michael K ^a   Lowe, Luis ^a   Hummel, Kimberly B ^a   Sazzad, Hossain M S ^b   Gurley, Emily S ^b   Hossain, M Jahangir ^b   Luby, Stephen P ^b   Miller, David M ^a   Comer, James A ^a   Rollin, Pierre E ^a   Bellini, William J ^a   Rota, Paul A ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b INTERNATIONAL CENTRE FOR DIARRHOEAL DISEASE RESEARCH   (Bangladesh)

Author keywords

[No Author keywords available]

Indexed keywords

IMMUNOGLOBULIN G; IMMUNOGLOBULIN M; VIRUS RNA;

ARTICLE; BANGLADESH; CONTROLLED STUDY; ENZYME LINKED IMMUNOSORBENT ASSAY; EPIDEMIC; GENE SEQUENCE; GENOTYPE; HUMAN; NIPAH VIRUS; NIPAH VIRUS INFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SEROLOGY; SPECIES DISTRIBUTION; VIRUS CHARACTERIZATION; VIRUS DETECTION; VIRUS IDENTIFICATION; VIRUS ISOLATION;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; BANGLADESH; CHILD; CONSERVED SEQUENCE; DISEASE OUTBREAKS; FEMALE; GENETIC VARIATION; GENOME, VIRAL; HENIPAVIRUS INFECTIONS; HUMANS; MOLECULAR SEQUENCE DATA; MOLECULAR TYPING; NIPAH VIRUS; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SEROEPIDEMIOLOGIC STUDIES; VIRAL PROTEINS;

EID: 84863071256     PISSN: 10806040     EISSN: 10806059     Source Type: Journal    
DOI: 10.3201/eid1802.111492     Document Type: Article

References (33)

1. Chua KB, Bellini WJ, Rota PA, Harcourt BH, Tamin A, Lam SK, et al. Nipah virus: a recently emergent deadly paramyxovirus. Science. 2000;288:1432-5. http://dx.doi.org/10.1126/science.288.5470.1432
2. Chua KB. Nipah virus outbreak in Malaysia. J Clin Virol. 2003; 26:265-75. http://dx.doi.org/10.1016/S1386-6532(02)0026-8
3. Chadha MS, Comer JA, Lowe L, Rota PA, Rollin PE, Bellini WJ, et al. Nipah virus-associated encephalitis outbreak, Siliguri, India. Emerg Infect Dis. 2006;12:235-40.
4. Arankalle VA, Bandyopadhyay BT, Ramdasi AY, Jadi R, Patil DR, Rahman M, et al. Genomic characterization of Nipah virus, West Bengal, India. Emerg Infect Dis. 2011;17:907-9.
5. Luby SP, Hossain MJ, Gurley ES, Ahmed B-N, Banu S, Khan SU, et al. Recurrent zoonotic transmission of Nipah virus into humans, Bangladesh, 2001-2007. Emerg Infect Dis. 2009;15:1229-35. http://dx.doi.org/10.3201/eid1508.081237
6. International Centre for Diarrheal Disease Research. Bangladesh. Nipah outbreak in Faridpur District, Bangladesh, 2010. Health and Science Bulletin. 2010;8:6-11.
7. Luby SP, Rahman M, Hossain MJ, Blum LS, Husain MM, Gurley E, et al. Foodborne transmission of Nipah virus, Bangladesh. Emerg Infect Dis. 2006;12:1888-94. http://dx.doi.org/10.3201/eid1212.060732
8. Gurley ES, Montgomery JM, Hossain MJ, Bell M, Azad AK, Islam MR, et al. Person-to-person transmission of Nipah virus in a Bangladeshi community. Emerg Infect Dis. 2007;13:1031-7.
9. Luby SP, Gurley ES, Hossain MJ. Transmission of human infections with Nipah virus. Clin Infect Dis. 2009;49:1743-8. http://dx.doi.org/10.1086/647951
10. Lo MK, Rota PA. The emergence of Nipah virus, a highly pathogenic paramyxovirus. J Clin Virol. 2008;43:396-400. http://dx.doi.org/10.1016/j.jcv.2008.08.007
11. Harcourt BH, Lowe L, Tamin A, Liu X, Bankamp B, Bowden N,et al. Genetic characterization of Nipah virus, Bangladesh, 2004. Emerg Infect Dis. 2005;11:1594-7.
12. Rahman MA, Hossain MJ, Sultana S, Homaira N, Khan SU, Rahman M, et al. Date palm sap linked to Nipah virus outbreak in Bangladesh, 2008. Vector Borne Zoonotic Dis. 2011; [Epub ahead of print]. http://dx.doi.org/10.1089/vbz.2011.0656
13. Daniels P, Ksiazek T, Eaton BT. Laboratory diagnosis of Nipah and Hendra virus infections. Microbes Infect. 2001;3:289-95. http://dx.doi.org/10.1016/S1286-4579(01)0138-x
14. Chomczynski P, Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem. 1987;162:156-9. http://dx.doi.org/10.1016/0003-2697(87)9002-2
15. Halpin K, Bankamp B, Harcourt BH, Bellini WJ, Rota PA. Nipah virus conforms to the rule of six in a minigenome replication assay. J Gen Virol. 2004;85:701-7. http://dx.doi.org/10.1099/vir.0.19685-0
16. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;10:2731-9. http://dx.doi.org/10.1093/molbev/msr121
17. Ong ST, Yusoff K, Kho CL, Abdullah JO, Tan WS. Mutagenesis of the nucleocapsid protein of Nipah virus involved in capsid assembly. J Gen Virol. 2009;90:392-7. http://dx.doi.org/10.1099/vir.0.005710-0
18. Chan YP, Koh CL, Lam SK, Wang LF. Mapping of domains responsible for nucleocapsid protein-phosphoprotein interaction of Henipaviruses. J Gen Virol. 2004;85:1675-84. http://dx.doi.org/10.1099/vir.0.19752-0
19. Omi-Furutani M, Yoneda M, Fujita K, Ikeda F, Kai C. Novel phosphoprotein-interacting region in Nipah virus nucleocapsid protein and its involvement in viral replication. J Virol. 2010;84:9793-9. http://dx.doi.org/10.1128/JVI.00339-10
20. Rodriguez JJ, Cruz CD, Horvath CM. Identification of the nuclear export signal and STAT-binding domains of the Nipah virus V protein reveals mechanisms underlying interferon evasion. J Virol. 2004;78:5358-67. http://dx.doi.org/10.1128/JVI.78.10.5358-5367.2004
21. Shaw ML, Garcia-Sastre A, Palese P, Basler CF. Nipah virus V and W proteins have a common STAT1-binding domain yet inhibit STAT1 activation from the cytoplasmic and nuclear compartments, respectively. J Virol. 2004;78:5633-41. http://dx.doi.org/10.1128/JVI.78.11.5633-5641.2004
22. Ciancanelli MJ, Volchkova VA, Shaw ML, Volchkov VE, Basler CF. Nipah virus sequesters inactive STAT1 in the nucleus via a P gene-encoded mechanism. J Virol. 2009;83:7828-41. http://dx.doi.org/10.1128/JVI.02610-08
23. Rahman SA, Hassan SS, Olival KJ, Mohamed M, Chang LY, Hassan L, et al. Characterization of Nipah virus from naturally infected Pteropus vampyrus bats, Malaysia. Emerg Infect Dis. 2010;16:1990-3.
24. Ciancanelli MJ, Basler CF. Mutation of YMYL in the Nipah virus matrix protein abrogates budding and alters subcellular localization. J Virol. 2006;80:12070-8. http://dx.doi.org/10.1128/JVI.01743-06
25. Patch JR, Han Z, McCarthy SE, Yan L, Wang LF, Harty RN, et al. The YPLGVG sequence of the Nipah virus matrix protein is required for budding. Virol J. 2008;5:137. http://dx.doi.org/10.1186/1743422X-5-137
26. Wang YE, Park A, Lake M, Pentecost M, Torres B, Yun TE, et al. Ubiquitin-regulated nuclear-cytoplasmic trafficking of the Nipah virus matrix protein is important for viral budding. PLoS Pathog. 2010;6:e1001186. http://dx.doi.org/10.1371/journal.ppat.1001186
27. Negrete OA, Chu D, Aguilar HC, Lee B. Single amino acid changes in the Nipah and Hendra virus attachment glycoproteins distinguish ephrinB2 from ephrinB3 usage. J Virol. 2007;81:10804-14. http://dx.doi.org/10.1128/JVI.00999-07
28. Bowden TA, Aricescu AR, Gilbert RJ, Grimes JM, Jones EY, Stuart DI. Structural basis of Nipah and Hendra virus attachment to their cell-surface receptor ephrin-B2. Nat Struct Mol Biol. 2008;15:567-72. http://dx.doi.org/10.1038/nsmb.1435
29. Poch O, Blumberg BM, Bougueleret L, Tordo N. Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains. J Gen Virol. 1990;71:1153-62. http://dx.doi.org/10.1099/0022-1317-71-51153
30. Harcourt BH, Tamin A, Halpin K, Ksiazek TG, Rollin PE, Bellini WJ, et al. Molecular characterization of the polymerase gene and genomic termini of Nipah virus. Virology. 2001;287:192-201. http://dx.doi.org/10.1006/viro.2001.1026
31. Rota PA, Featherstone DA, Bellini WJ. Molecular epidemiology of measles virus. Curr Top Microbiol Immunol. 2009;330:129-50.http://dx.doi.org/10.1007/978-3-540-70617-5_7
32. Jin L, Rima B, Brown D, Orvell C, Tecle T, Afzal M, et al. Proposal for genetic characterisation of wild-type mumps strains: preliminary standardisation of the nomenclature. Arch Virol. 2005;150:1903-9. http://dx.doi.org/10.1007/s00705-005-0563-4
33. Wacharapluesadee S, Hemachudha T. Duplex nested RT-PCR for detection of Nipah virus RNA from urine specimens of bats. J Virol Methods. 2007;141:97-101. http://dx.doi.org/10.1016/j.jviromet.2006.11.023