-
1
-
-
55549086871
-
A novel type of thioredoxin dedicated to symbiosis in legumes
-
Alkhalfioui F, Renard M, Frendo P, Keichinger C, Meyer Y, Gelhaye E et al (2008) A novel type of thioredoxin dedicated to symbiosis in legumes. Plant Physiol 148:424-435
-
(2008)
Plant Physiol
, vol.148
, pp. 424-435
-
-
Alkhalfioui, F.1
Renard, M.2
Frendo, P.3
Keichinger, C.4
Meyer, Y.5
Gelhaye, E.6
-
2
-
-
34548317146
-
FireDock: Fast interaction refinement in molecular docking
-
Andrusier N, Nussinov R, Wolfson HJ (2007) FireDock: Fast interaction refinement in molecular docking. Proteins 69:139-159
-
(2007)
Proteins
, vol.69
, pp. 139-159
-
-
Andrusier, N.1
Nussinov, R.2
Wolfson, H.J.3
-
3
-
-
0033775891
-
Physiological functions of thioredoxin and thioredoxin reductase
-
Arner ES, Holmgren A (2000) Physiological functions of thioredoxin and thioredoxin reductase. Eur J Biochem 267:6102-6109
-
(2000)
Eur J Biochem
, vol.267
, pp. 6102-6109
-
-
Arner, E.S.1
Holmgren, A.2
-
5
-
-
0036187913
-
Extensive feature detection of N-terminal protein sorting signals
-
Bannai H, Tamada Y, Maruyama O, Nakai K, Miyano S (2002) Extensive feature detection of N-terminal protein sorting signals. Bioinformatics 18:298-305
-
(2002)
Bioinformatics
, vol.18
, pp. 298-305
-
-
Bannai, H.1
Tamada, Y.2
Maruyama, O.3
Nakai, K.4
Miyano, S.5
-
6
-
-
0030852012
-
Thioredoxin-linked plant and animal processes: The new generation
-
Besse I, Buchanan BB (1997) Thioredoxin-linked plant and animal processes: The new generation. Bot Bull Acad Sin 38:1-11
-
(1997)
Bot Bull Acad Sin
, vol.38
, pp. 1-11
-
-
Besse, I.1
Buchanan, B.B.2
-
7
-
-
77952811130
-
Going from where to why-interpretable prediction of protein subcellular localization
-
Briesemeister S, Rahnenführer J, Kohlbacher O (2010) Going from where to why-interpretable prediction of protein subcellular localization. Bioinformatics 26:1232-1238
-
(2010)
Bioinformatics
, vol.26
, pp. 1232-1238
-
-
Briesemeister, S.1
Rahnenführer, J.2
Kohlbacher, O.3
-
8
-
-
0027191446
-
The Nicotiana tabacum genome encodes two cytoplasmic thioredoxin genes which are differently expressed
-
Brugidou C, Marty I, Chartier Y, Meyer Y (1992) The Nicotiana tabacum genome encodes two cytoplasmic thioredoxin genes which are differently expressed. Mol Gen Genet 238:285-293
-
(1992)
Mol Gen Genet
, vol.238
, pp. 285-293
-
-
Brugidou, C.1
Marty, I.2
Chartier, Y.3
Meyer, Y.4
-
9
-
-
0036413565
-
The ferredoxin/thioredoxin system: From discovery to molecular structures and beyond
-
Buchanan BB, Schürmann P, Wolosiuk RA, Jacquot JP (2002) The ferredoxin/thioredoxin system: From discovery to molecular structures and beyond. Photosynth Res 73:215-222
-
(2002)
Photosynth Res
, vol.73
, pp. 215-222
-
-
Buchanan, B.B.1
Schürmann, P.2
Wolosiuk, R.A.3
Jacquot, J.P.4
-
10
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP, and related tools
-
doi:10.1038/nprot.2007.131
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP, and related tools. Nat Protoc 2:953-971. doi:10.1038/nprot.2007.131
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
11
-
-
0000461280
-
Confidence limit on phylogenies: An approach using the bootstrap
-
Felsenstein J (1985) Confidence limit on phylogenies: An approach using the bootstrap. Evolution 39:783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
12
-
-
0002681086
-
Post-transcriptional regulation of gene expression in plants
-
Gallie DR (1993) Post-transcriptional regulation of gene expression in plants. Ann Rev Plant Physiol Plant Mol Biol 44:77-105
-
(1993)
Ann Rev Plant Physiol Plant Mol Biol
, vol.44
, pp. 77-105
-
-
Gallie, D.R.1
-
13
-
-
27144505097
-
Protein identification and analysis tools on the ExPASy server
-
Walker JM (ed). Humana Press, Totowa
-
Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, Appel RD et al (2005) Protein identification and analysis tools on the ExPASy server. In: Walker JM (ed) The proteomics protocols handbook. Humana Press, Totowa, pp 571-607
-
(2005)
The Proteomics Protocols Handbook
, pp. 571-607
-
-
Gasteiger, E.1
Hoogland, C.2
Gattiker, A.3
Duvaud, S.4
Wilkins, M.R.5
Appel, R.D.6
-
14
-
-
0032032912
-
Characterization of wheat thioredoxin h cDNA and production of an active Triticum aestivum protein in Escherichia coli
-
Gautier MF, Lullien-Pellerin V, de Lamotte-Guery F, Guirao A, Joudrier P (1998) Characterization of wheat thioredoxin h cDNA and production of an active Triticum aestivum protein in Escherichia coli. Eur J Biochem 252:314-2324
-
(1998)
Eur J Biochem
, vol.252
, pp. 314-2324
-
-
Gautier, M.F.1
Lullien-Pellerin, V.2
De Lamotte-Guery, F.3
Guirao, A.4
Joudrier, P.5
-
15
-
-
0036203178
-
Isolation and characterization of an extended thioredoxin h from poplar
-
Gelhaye E, Rouhier N, Laurent P, Sautiere PE, Martin F, Jacquot JP (2002) Isolation and characterization of an extended thioredoxin h from poplar. Physiol Plant 114:165-171
-
(2002)
Physiol Plant
, vol.114
, pp. 165-171
-
-
Gelhaye, E.1
Rouhier, N.2
Laurent, P.3
Sautiere, P.E.4
Martin, F.5
Jacquot, J.P.6
-
16
-
-
0346366724
-
Evidence for a subgroup of thioredoxin h that requires GSH/Grx for its reduction
-
Gelhaye E, Rouhier N, Jacquot JP (2003) Evidence for a subgroup of thioredoxin h that requires GSH/Grx for its reduction. FEBS Lett 555:443-448
-
(2003)
FEBS Lett
, vol.555
, pp. 443-448
-
-
Gelhaye, E.1
Rouhier, N.2
Jacquot, J.P.3
-
17
-
-
0242668690
-
Identification and characterization of a third thioredoxin h in poplar
-
Gelhaye E, Rouhier N, Vlamis-Gardikas A, Girardet JM, Sautière PE, Sayzet M et al (2003) Identification and characterization of a third thioredoxin h in poplar. Plant Physiol Biochem 41:629-635
-
(2003)
Plant Physiol Biochem
, vol.41
, pp. 629-635
-
-
Gelhaye, E.1
Rouhier, N.2
Vlamis-Gardikas, A.3
Girardet, J.M.4
Sautière, P.E.5
Sayzet, M.6
-
19
-
-
5144234728
-
A specific form of thioredoxin h occurs in plant mitochondria and regulates the alternative oxidase
-
Gelhaye E, Rouhier N, Gerard J, Jolivet Y, Gualberto J, Navrot N et al (2004) A specific form of thioredoxin h occurs in plant mitochondria and regulates the alternative oxidase. Proc Natl Acad Sci USA 101:14545-14550
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 14545-14550
-
-
Gelhaye, E.1
Rouhier, N.2
Gerard, J.3
Jolivet, Y.4
Gualberto, J.5
Navrot, N.6
-
21
-
-
0029595442
-
SOPMA: Significant improvement in protein secondary structure prediction by consensus prediction from multiple alignments
-
Geourjon C, Deleage G (1995) SOPMA: Significant improvement in protein secondary structure prediction by consensus prediction from multiple alignments. Comput Appl Biosci 11:681-684
-
(1995)
Comput Appl Biosci
, vol.11
, pp. 681-684
-
-
Geourjon, C.1
Deleage, G.2
-
22
-
-
84855995400
-
Rapid and efficient isolation of high quality nucleic acids from plant tissues rich in polyphenols and polysaccharides
-
doi: 10.1007/s12033-011-9384-8
-
Heidari Japelaghi R, Haddad R, Garoosi GA (2011) Rapid and efficient isolation of high quality nucleic acids from plant tissues rich in polyphenols and polysaccharides. Mol Biotechnol. doi: 10.1007/s12033-011-9384-8
-
(2011)
Mol Biotechnol.
-
-
Heidari Japelaghi, R.1
Haddad, R.2
Garoosi, G.A.3
-
23
-
-
0029106436
-
Thioredoxin h is one of the major proteins in rice phloem sap
-
Ishiwatari Y, Honda C, Kawashima I, Nakamura S, Hirano H, Mori S et al (1995) Thioredoxin h is one of the major proteins in rice phloem sap. Planta 195:456-463
-
(1995)
Planta
, vol.195
, pp. 456-463
-
-
Ishiwatari, Y.1
Honda, C.2
Kawashima, I.3
Nakamura, S.4
Hirano, H.5
Mori, S.6
-
24
-
-
0031444519
-
Thioredoxin: Structure and function in plant cells
-
Jacquot JP, Lancelin JM, Meyer Y (1997) Thioredoxin: Structure and function in plant cells. New Phytol 136:543-570
-
(1997)
New Phytol
, vol.136
, pp. 543-570
-
-
Jacquot, J.P.1
Lancelin, J.M.2
Meyer, Y.3
-
25
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A et al (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449:463-467
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillon, O.1
Aury, J.M.2
Noel, B.3
Policriti, A.4
Clepet, C.5
Casagrande, A.6
-
26
-
-
78149347248
-
Identification of genes differentially expressed in cauliflower associated with resistance to Xanthomonas campestris pv
-
Jiang H, Song W, Li A, Yang X, Sun D (2011) Identification of genes differentially expressed in cauliflower associated with resistance to Xanthomonas campestris pv. Campestris. Mol Biol Rep 38:621-629
-
(2011)
Campestris. Mol Biol Rep
, vol.38
, pp. 621-629
-
-
Jiang, H.1
Song, W.2
Li, A.3
Yang, X.4
Sun, D.5
-
27
-
-
0034529823
-
Cloning and expression of a distinct cluster of plant thioredoxins
-
Juttner J, Olde D, Langridge P, Baumann U (2000) Cloning and expression of a distinct cluster of plant thioredoxins. Eur J Biochem 267:7109-7117
-
(2000)
Eur J Biochem
, vol.267
, pp. 7109-7117
-
-
Juttner, J.1
Olde, D.2
Langridge, P.3
Baumann, U.4
-
28
-
-
58549116090
-
Isolation and characterization of a glutaredoxin gene from Panax ginseng C. A. Meyer
-
Kim YJ, Shim JS, Krishna PR, Kim SY, In JG, Kim MK et al (2008) Isolation and characterization of a glutaredoxin gene from Panax ginseng C. A. Meyer. Plant Mol Biol Rep 26:335-349
-
(2008)
Plant Mol Biol Rep
, vol.26
, pp. 335-349
-
-
Kim, Y.J.1
Shim, J.S.2
Krishna, P.R.3
Kim, S.Y.4
In, J.G.5
Kim, M.K.6
-
29
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105-132
-
(1982)
J Mol Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
30
-
-
23144448512
-
ConSurf: The projection of evolutionary conservation scores of residues on protein structures
-
Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T et al (2005) ConSurf: The projection of evolutionary conservation scores of residues on protein structures. Nucleic Acid Res. http://www.ncbi.nlm.nih.gov/pubmed/ 15980475
-
(2005)
Nucleic Acid Res.
-
-
Landau, M.1
Mayrose, I.2
Rosenberg, Y.3
Glaser, F.4
Martz, E.5
Pupko, T.6
-
31
-
-
0034682854
-
Twists in catalysis: Alternating conformations of Escherichia coli thioredoxin reductase
-
Lennon BW, Williams CH, Ludwig ML (2000) Twists in catalysis: Alternating conformations of Escherichia coli thioredoxin reductase. Science 289:1190-1194
-
(2000)
Science
, vol.289
, pp. 1190-1194
-
-
Lennon, B.W.1
Williams, C.H.2
Ludwig, M.L.3
-
32
-
-
79951578219
-
Molecular characterization of a thioredoxin h gene (HbTRX1) from Hevea brasiliensis showing differential expression in latex between selfrooting juvenile clones and donor clones
-
Li HL, Lu HZ, Guo D, Tian WM, Peng SQ (2010) Molecular characterization of a thioredoxin h gene (HbTRX1) from Hevea brasiliensis showing differential expression in latex between selfrooting juvenile clones and donor clones. Mol Biol Rep 38:1989-1994
-
(2010)
Mol Biol Rep
, vol.38
, pp. 1989-1994
-
-
Li, H.L.1
Lu, H.Z.2
Guo, D.3
Tian, W.M.4
Peng, S.Q.5
-
33
-
-
44349183189
-
Crystal structures of barley thioredoxin h isoforms HvTrxh1 and HvTrxh2 reveal features involved in protein recognition and possibly in discriminating the isoform specificity
-
Maeda K, Hagglund P, Finnie C, Svensson B, Henriksen A (2008) Crystal structures of barley thioredoxin h isoforms HvTrxh1 and HvTrxh2 reveal features involved in protein recognition and possibly in discriminating the isoform specificity. Protein Sci 17:1015-1024
-
(2008)
Protein Sci
, vol.17
, pp. 1015-1024
-
-
Maeda, K.1
Hagglund, P.2
Finnie, C.3
Svensson, B.4
Henriksen, A.5
-
34
-
-
77649251362
-
A membrane-associated thioredoxin required for plant growth moves from cell to cell, suggestive of a role in intercellular communication
-
Meng L, Wong JH, Feldman LJ, Lemaux PG, Buchanan BB (2010) A membrane-associated thioredoxin required for plant growth moves from cell to cell, suggestive of a role in intercellular communication. Proc Natl Acad Sci USA 107:3900-3905
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 3900-3905
-
-
Meng, L.1
Wong, J.H.2
Feldman, L.J.3
Lemaux, P.G.4
Buchanan, B.B.5
-
35
-
-
0002011998
-
Plant gene structure
-
Kosuge T, Meredith CP, Hollaender A (eds) Plenum Press, New York
-
Messing J, Geraghty D, Heidecker G, Hu NT, Kridl J, Rubenstein I (1983) Plant gene structure. In: Kosuge T, Meredith CP, Hollaender A (eds) Genetic engineering of plants. Plenum Press, New York, pp 211-227
-
(1983)
Genetic Engineering of Plants.
, pp. 211-227
-
-
Messing, J.1
Geraghty, D.2
Heidecker, G.3
Hu, N.T.4
Kridl, J.5
Rubenstein, I.6
-
36
-
-
0036119804
-
Classification of plant thioredoxins by sequence similarity and intron position
-
Meyer Y, Vignols F, Reichheld JP (2002) Classification of plant thioredoxins by sequence similarity and intron position. Method Enzymol 347:394-402
-
(2002)
Method Enzymol
, vol.347
, pp. 394-402
-
-
Meyer, Y.1
Vignols, F.2
Reichheld, J.P.3
-
37
-
-
41449090214
-
Glutaredoxins and thioredoxins in plants
-
Meyer Y, Siala W, Bashandy T, Riondet C, Vignols F, Reichheld JP (2008) Glutaredoxins and thioredoxins in plants. Biochim Biophys Acta 1783:589-600
-
(2008)
Biochim Biophys Acta
, vol.1783
, pp. 589-600
-
-
Meyer, Y.1
Siala, W.2
Bashandy, T.3
Riondet, C.4
Vignols, F.5
Reichheld, J.P.6
-
38
-
-
0038038334
-
Identification and differential expression of two thioredoxin h isoforms in germinating seeds from pea
-
Montrichard F, Renard M, Alkhalfioui F, Duval FD, Macherel D (2003) Identification and differential expression of two thioredoxin h isoforms in germinating seeds from pea. Plant Physiol 132:1707-1715
-
(2003)
Plant Physiol
, vol.132
, pp. 1707-1715
-
-
Montrichard, F.1
Renard, M.2
Alkhalfioui, F.3
Duval, F.D.4
Macherel, D.5
-
39
-
-
57049094420
-
Detection of functionally important regions in hypothetical proteins of known structure
-
Nimrod G, Schushan M, Steinberg DM, Ben-Tal N (2008) Detection of functionally important regions in hypothetical proteins of known structure. Structure 16:1755-1763
-
(2008)
Structure
, vol.16
, pp. 1755-1763
-
-
Nimrod, G.1
Schushan, M.2
Steinberg, D.M.3
Ben-Tal, N.4
-
40
-
-
77955663997
-
Molecular cloning and mRNA expression of peroxiredoxin gene in black tiger shrimp (Penaeus monodon
-
Qiu L, Ma Z, Jiang S, Wang W, Zhou F, Huang J et al (2009) Molecular cloning and mRNA expression of peroxiredoxin gene in black tiger shrimp (Penaeus monodon). Mol Biol Rep 37:2821-2827
-
(2009)
Mol Biol Rep
, vol.37
, pp. 2821-2827
-
-
Qiu, L.1
Ma, Z.2
Jiang, S.3
Wang, W.4
Zhou, F.5
Huang, J.6
-
41
-
-
0036964026
-
Redox control by dithiol-disulfide exchange in plants. Part II. Cytosolic and mitochondrial systems
-
Rouhier N, Gelhaye E, Jacquot JP (2002) Redox control by dithiol-disulfide exchange in plants. Part II. Cytosolic and mitochondrial systems. Ann NY Acad Sci 973:520-528
-
(2002)
Ann NY Acad Sci
, vol.973
, pp. 520-528
-
-
Rouhier, N.1
Gelhaye, E.2
Jacquot, J.P.3
-
42
-
-
3042658652
-
Plant glutaredoxins: Still mysterious reducing systems
-
Rouhier N, Gelhaye E, Jacquot JP (2004) Plant glutaredoxins: Still mysterious reducing systems. Cell Mol Life Sci 61:1266-1277
-
(2004)
Cell Mol Life Sci
, vol.61
, pp. 1266-1277
-
-
Rouhier, N.1
Gelhaye, E.2
Jacquot, J.P.3
-
43
-
-
0026772714
-
Conservation analysis and secondary structure prediction of the SH2 family of phosphotyrosine binding domains
-
Russell RB, Breed J, Barton GJ (1992) Conservation analysis and secondary structure prediction of the SH2 family of phosphotyrosine binding domains. FEBS Lett 304:15-20
-
(1992)
FEBS Lett
, vol.304
, pp. 15-20
-
-
Russell, R.B.1
Breed, J.2
Barton, G.J.3
-
44
-
-
0029883325
-
Intron position as an evolutionary marker of thioredoxins and thioredoxin domains
-
Sahrawy M, Hecht V, Lopez-Jaramillo J, Chueca A, Chartier Y, Meyer Y (1996) Intron position as an evolutionary marker of thioredoxins and thioredoxin domains. J Mol Evol 42:422-431
-
(1996)
J Mol Evol
, vol.42
, pp. 422-431
-
-
Sahrawy, M.1
Hecht, V.2
Lopez-Jaramillo, J.3
Chueca, A.4
Chartier, Y.5
Meyer, Y.6
-
47
-
-
0031666953
-
Identification of immunologically related proteins in sieve-tube exudate collected from monocotyledonous and dicotyledonous plants
-
Schobert C, Baker L, Szederkenyi J, Grossmann P, Komor E, Hayashi H (1998) Identification of immunologically related proteins in sieve-tube exudate collected from monocotyledonous and dicotyledonous plants. Planta 206:245-252
-
(1998)
Planta
, vol.206
, pp. 245-252
-
-
Schobert, C.1
Baker, L.2
Szederkenyi, J.3
Grossmann, P.4
Komor, E.5
Hayashi, H.6
-
48
-
-
77952999879
-
Analysis of oligomeric protein complexes in the chloroplastsub-proteome of nucleic acid-binding proteins from mustard reveals potential redox regulators of plastid gene expression
-
Schröter Y, Steiner S, Matthäi K, Pfannschmidt T (2010) Analysis of oligomeric protein complexes in the chloroplastsub-proteome of nucleic acid-binding proteins from mustard reveals potential redox regulators of plastid gene expression. Proteomics 10:2191-2204
-
(2010)
Proteomics
, vol.10
, pp. 2191-2204
-
-
Schröter, Y.1
Steiner, S.2
Matthäi, K.3
Pfannschmidt, T.4
-
49
-
-
0042209787
-
Type-h thioredoxins accumulate in the nucleus of developing wheat seed tissues suffering oxidative stress
-
Serrato AJ, Cejudo FJ (2003) Type-h thioredoxins accumulate in the nucleus of developing wheat seed tissues suffering oxidative stress. Planta 217:392-399
-
(2003)
Planta
, vol.217
, pp. 392-399
-
-
Serrato, A.J.1
Cejudo, F.J.2
-
50
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
51
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang Y (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9:40
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 40
-
-
Zhang, Y.1
|