-
1
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi A.L. and Oltvai Z.N. Network biology: understanding the cell's functional organization, Nat. Res., 2004, 5:101-114.
-
(2004)
Nat. Res.
, vol.5
, pp. 101-114
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
2
-
-
0032489015
-
The cell as a collection of protein machines: Preparing the next generation of molecular biologists
-
DOI 10.1016/S0092-8674(00)80922-8
-
Alberts B. The cell as a collection of protein machines: preparing the next generation of molecular biologists. Cell 1998, 92, 291-294 (Pubitemid 28093007)
-
(1998)
Cell
, vol.92
, Issue.3
, pp. 291-294
-
-
Alberts, B.1
-
4
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
Bader G.D. and Hogue C.W. An automated method for finding molecular complexes in large protein interaction networks, BMC Bioinformatics, 2003, 4:2.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
5
-
-
33748579201
-
Interaction Graph Mining for Protein Complexes Using Local Clique Merging
-
Li XL, Tan S, Foo C and Ng S. Interaction Graph Mining for Protein Complexes Using Local Clique Merging. Genome Informatics, 2005, 16(2): 260-269.
-
(2005)
Genome Informatics
, vol.16
, Issue.2
, pp. 260-269
-
-
Li, X.L.1
Tan, S.2
Foo, C.3
Ng, S.4
-
6
-
-
33744805096
-
Development and implementation of an algorithm for detection of protein complexes in large interaction networks
-
Altaf-Ul-Amin M, Shinbo Y, Mihara K, et al. Development and implementation of an algorithm for detection of protein complexes in large interaction networks, BMC Bioinformatics, 2006, 7:207.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 207
-
-
Altaf-Ul-Amin, M.1
Shinbo, Y.2
Mihara, K.3
-
7
-
-
54349096842
-
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
-
Li M, Chen J, Wang J, et al. Modifying the DPClus algorithm for identifying protein complexes based on new topological structures, BMC Bioinformatics, 2008, 9:398.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 398
-
-
Li, M.1
Chen, J.2
Wang, J.3
-
8
-
-
77951288682
-
Identifying the Overlapping Complexes in Protein Interaction Networks
-
Li M, Wang J, Chen J, et al. Identifying the Overlapping Complexes in Protein Interaction Networks. Int. J. DataMing and Bioinformatics, 2010, 4(1):91-108.
-
(2010)
Int. J. DataMing and Bioinformatics
, vol.4
, Issue.1
, pp. 91-108
-
-
Li, M.1
Wang, J.2
Chen, J.3
-
9
-
-
10244264813
-
Protein complex prediction via cost-based clustering
-
DOI 10.1093/bioinformatics/bth351
-
King A D, Przulj N, Jurisica I. Protein complex prediction via cost-based clustering, Bioinformatics, 2004, 20(17):3013-3020. (Pubitemid 39619193)
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3013-3020
-
-
King, A.D.1
Przulj, N.2
Jurisica, I.3
-
10
-
-
38349102446
-
An efficient spectral algorithm for network community discovery and its applications to biological and social networks
-
Perner P, ed.
-
Ruan J H, Zhang W X. An efficient spectral algorithm for network community discovery and its applications to biological and social networks. In: Perner P, ed. Proceedings of the 7th IEEE International Conference on Data Mining. 2007, 72: 643-648
-
(2007)
Proceedings of the 7th IEEE International Conference on Data Mining
, vol.72
, pp. 643-648
-
-
Ruan, J.H.1
Zhang, W.X.2
-
11
-
-
33846681448
-
Modular organization of protein interaction networks
-
DOI 10.1093/bioinformatics/btl562
-
Luo F, Yang Y, Chen CF, et al. Modular organization of protein interaction networks, Bioinformatics, 2007, 23(2):207-214. (Pubitemid 46189611)
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 207-214
-
-
Luo, F.1
Yang, Y.2
Chen, C.-F.3
Chang, R.4
Zhou, J.5
Scheuermann, R.H.6
-
12
-
-
79952841798
-
A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks
-
Wang J, Li M, Chen J and Pan Y. A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, 8(3):607-620.
-
(2011)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.8
, Issue.3
, pp. 607-620
-
-
Wang, J.1
Li, M.2
Chen, J.3
Pan, Y.4
-
13
-
-
46249126321
-
Protein complex identification by supervised graph local clustering
-
Qi Y, Balem F, Faloutsos C, et al. Protein complex identification by supervised graph local clustering. Bioinformatics 2008, 250-258.
-
(2008)
Bioinformatics
, pp. 250-258
-
-
Qi, Y.1
Balem, F.2
Faloutsos, C.3
-
14
-
-
76749150479
-
Computational approaches for detecting protein complexes from protein interaction networks: A survey
-
Li X, Wu M, Kwoh C and Ng S. Computational approaches for detecting protein complexes from protein interaction networks: a survey. BMC Genomics 2010, 11(suppl 1):S3
-
(2010)
BMC Genomics
, vol.11
, Issue.SUPPL. 1
-
-
Li, X.1
Wu, M.2
Kwoh, C.3
Ng, S.4
-
15
-
-
78649679994
-
Recent advances in clustering methods for protein interaction networks
-
Wang J, Li M, Deng Y and Pan Y. Recent advances in clustering methods for protein interaction networks. BMC Genomics 2010, 11(Suppl 3):S10.
-
(2010)
BMC Genomics
, vol.11
, Issue.SUPPL. 3
-
-
Wang, J.1
Li, M.2
Deng, Y.3
Pan, Y.4
-
16
-
-
33751255087
-
Evaluation of clustering algorithms for protein-protein interaction networks
-
Brohe S, van Helden J. Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinformatics, 2006, 7:488
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 488
-
-
Brohe, S.1
Van Helden, J.2
-
17
-
-
84862970190
-
Algorithms for Detecting Protein Complexes in PPI Networks: An Evaluation Study
-
Wu M, Li X, Kwoh C. Algorithms for Detecting Protein Complexes in PPI Networks: An Evaluation Study. Proceedings of Third IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB 2008), Australia, 2008, 135-146.
-
Proceedings of Third IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB 2008), Australia, 2008
, pp. 135-146
-
-
Wu, M.1
Li, X.2
Kwoh, C.3
-
18
-
-
75949120438
-
How and when should interactome-derived clusters be used to predict functional modules and protein function?
-
Song J and Singh M. How and when should interactome-derived clusters be used to predict functional modules and protein function? Bioinformatics, 2009, 25(23):3143-3150.
-
(2009)
Bioinformatics
, vol.25
, Issue.23
, pp. 3143-3150
-
-
Song, J.1
Singh, M.2
-
19
-
-
0003033112
-
Using information content to evaluate semantic similarity in a taxonomy
-
Resnik P. Using information content to evaluate semantic similarity in a taxonomy.In IJCAI, 1995, 448-453.
-
(1995)
IJCAI
, pp. 448-453
-
-
Resnik, P.1
-
22
-
-
0038478096
-
Semantic similarity measures as tools for exploring the gene ontology
-
Lord P, Stevens R, Brass A, and Goble C. Semantic similarity measures as tools for exploring the gene ontology. In Pacific Symposium on Biocomputing, 2003, 601-612.
-
Pacific Symposium on Biocomputing, 2003
, pp. 601-612
-
-
Lord, P.1
Stevens, R.2
Brass, A.3
Goble, C.4
-
23
-
-
34447294237
-
A new method to measure the semantic similarity of GO terms
-
DOI 10.1093/bioinformatics/btm087
-
Wang J, Du Z, Payattakool R, et al. A new method to measure the semantic similarity of go terms. Bioinformatics, 2007, 23(10):1274-1281. (Pubitemid 47050544)
-
(2007)
Bioinformatics
, vol.23
, Issue.10
, pp. 1274-1281
-
-
Wang, J.Z.1
Du, Z.2
Payattakool, R.3
Yu, P.S.4
Chen, C.-F.5
-
24
-
-
33746058639
-
Learning and Evaluation in the Presence of Class Hierarchies: Application to Text Categorization
-
AI 2006
-
Kiritchenko S, Matwin S, Nock R, and Famili A. Learning and Evaluation in the Presence of Class Hierarchies: Application to Text Categorization. AI 2006, LNAI 4013,395-406.
-
LNAI
, vol.4013
, pp. 395-406
-
-
Kiritchenko, S.1
Matwin, S.2
Nock, R.3
Famili, A.4
-
25
-
-
0036088133
-
DIP: The Database of Interaction Proteins: A research tool for studying cellular networks of protien interactions
-
Xenarios I.et al. DIP: the Database of Interaction Proteins: a research tool for studying cellular networks of protien interactions, Nucleic Acids Res, 2002, 30, 303-305.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 303-305
-
-
Xenarios, I.1
|