Loss of parental coding sequences in an early generation of wheat-rye allopolyploid

International Journal of Plant Sciences

Volumn 173, Issue 1, 2012, Pages 1-6

  Tang, Zongxiang ^a   Wu, Meng ^a   Zhang, Huaiqiong ^a   Yan, Benju ^a   Tan, Feiquan ^a   Zhang, Huaiyu ^a   Fu, Shulan ^a   Ren, Zhenglong ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Allopolyploid; Coding sequence; Elimination of DNA; eSSR markers; Rye; Wheat

Indexed keywords

CONSERVATION MANAGEMENT; FREQUENCY ANALYSIS; GENERATION TIME; GENETIC MARKER; HYBRID; POLYMERASE CHAIN REACTION; POLYPLOIDY; WHEAT;

SECALE CEREALE; TRITICUM AESTIVUM;

EID: 84862958251     PISSN: 10585893     EISSN: None     Source Type: Journal    
DOI: 10.1086/662655     Document Type: Article

References (25)

1. Bento M, HS Pereira, M Rocheta, JP Gustafson, W Viegas, M Silva 2008 Polyploidization as a retraction force in plant genome evolution: sequence rearrangements in Triticale. PLoS ONE 3: e1402.
2. Boyko EV, NS Badaev, NG Maximov, AV Zelenin 1984 Does DNA content change in the course of triticale breeding? Cereal Res Commun 12:99-100.
3. Boyko EV, NS Badaev, NG Maximov, AV Zelenin 1988 Regularities of genome formation and organization in cereals. I. DNA quantitative changes in the process of allopolyploidization. Genetika 24:89-97.
4. Feldman M, B Liu, G Segal, S Abbo, AA Levy, JM Vega 1997 Rapid elimination of low-copy DNA sequences in polyploidy wheat: a possible mechanism for differentiation of homoeologous chromosomes. Genetics 147:1381-1387.
5. Feng SP, WG Li, HS Huang, JY Wang, YT Wu 2009 Development, characterization and cross-species/genera transferability of EST-SSR markers for rubber tree (Hevea brasiliensis). Mol Breed 23:85-97.
6. Han FP, G Fedak, W Guo, B Liu 2005 Rapid and repeatable elimination of a parental genome-specific DNA repeat (pGc1R-1a) in newly synthesized wheat allopolyploids. Genetics 170:1230-1245.
7. Kashkush K, M Feldman, AA Levy 2002 Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics 160:1651-1659.
8. Liu B, JM Vega, M Feldman 1998a Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. II. Changes in low-copy coding DNA sequences. Genome 41:535-542.
9. Liu B, JM Vega, G Segal, S Abbo, M Rodova, M Feldman 1998b Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. I. Changes in low-copy noncoding DNA sequences. Genome 41:272-277.
10. Ma XF, P Fang, JP Gustafson 2004 Polyploidization-induced genome variation in triticale. Genome 47:839-848.
11. Ma XF, JP Gustafson 2006 Timing and rate of genome variation in triticale following allopolyploidization. Genome 49:950-958.
12. Ma XF, JP Gustafson 2008 Allopolyploidization-accommodated genomic sequence changes in triticale. Ann Bot 101:825-832.
13. Ma XF, MA Rodriguez Milla, JP Gustafson 2002 AFLP-based genome studies of triticale following polyploidization. Pages 89-94
14. A Aniol, E Arseniuk, K Cooper, N Darvey, JP Gustafson, R Jessop, eds. Proceedings of the 5th International Triticale Symposium Plant Breeding and Acclimatization Institute (IHAR), Radzików, Poland.
15. Madlung A, RW Masuelli, B Watson, SH Reynolds, J Davison, L Comai 2002 Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. Plant Physiol 129:733-746.
16. Ozkan H, AA Levy, M Feldman 2001 Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group. Plant Cell 13:1735-1747.
17. Shaked H, K Kashkush, H Ozkan, M Feldman, AA Levy 2001 Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant J 13:1749-1759.
18. Tang JF, LF Gao, YS Cao, JZ Jia 2006 Homologous analysis of SSRESTs and transferability of wheat SSR-EST markers across barley, rice and maize. Euphytica 151:87-93.
19. Tang ZX, SL Fu, ZL Ren, JP Zhou, BJ Yan, HQ Zhang 2008 Variations of tandem repeat, regulatory element and promoter regions revealed by wheat-rye amphiploids. Genome 51:399-408.
20. Tang ZX, SL Fu, ZL Ren, YT Zou 2009 Rapid evolution of simple sequence repeat induced by allopolyploidization. J Mol Evol 69: 217-228.
21. Tsuda Y, S Ueno, S Kato, T Katsuki, Y Mukai, Y Tsumura 2009a Development of 13 EST-SSRs for Cerasus jamasakura and their transferability for Japanese flowering cherries. Conserv Genet 10: 685-688.
22. Tsuda Y, S Ueno, J Ranta, K Salminen, Y Ide, K Shinohara, Y Tsumura 2009b Development of 11 EST-SSRs for Japanese white birch, Betula platyphylla var. japonica and their transferability to related species. Conserv Genet 10:1385-1388.
23. Xue SL, ZZ Zhang, F Lin, ZX Kong, Y Cao, CJ Li, HY Yi, et al 2008 A high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags. Theor Appl Genet 117:181-189.
24. Zhang HB, XP Zhao, X Ding, AH Paterson, RA Wing 1995 Preparation of megabase-sized DNA from plant nuclei. Plant J 7: 175-184.
25. Zhang LY, M Bernard, P Leroy, C Feuillet, P Sourdille 2005 High transferability of bread wheat EST-derived SSRs to other cereals. Theor Appl Genet 111:677-687.