Genome sequences of three tunicamycin-producing Streptomyces strains, S. chartreusis NRRL 12338, S. chartreusis NRRL 3882, and S. lysosuperificus ATCC 31396

Journal of Bacteriology

Volumn 193, Issue 24, 2011, Pages 7021-7022

  Doroghazi, James R ^b   Ju, Kou San ^b   Brown, Daren W ^a   Labeda, David P ^a   Deng, Zixin ^d   Metcalf, William W ^b   Chen, Wenqing ^c,d   Price, Neil P J ^a  

^a NATIONAL CENTER FOR AGRICULTURAL UTILIZATION RESEARCH   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c School of Pharmaceutical Sciences   (China)

^d SHANGHAI JIAO TONG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

BACTERIAL GENOME; BACTERIAL STRAIN; GENE LIBRARY; GENE SEQUENCE; NONHUMAN; NOTE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STREPTOMYCES; STREPTOMYCES CHARTREUSIS; STREPTOMYCES LYSOSUPERIFICUS;

ANTI-BACTERIAL AGENTS; BASE SEQUENCE; CEPHALOSPORINS; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; STREPTOMYCES; TUNICAMYCIN;

STREPTOMYCES; STREPTOMYCES CHARTREUSIS; STREPTOMYCES CLAVULIGERUS;

EID: 84862908446     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.06262-11     Document Type: Note

References (15)

1. Boetzer, M., et al. 2011. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics 27:578-579.
2. Chaisson, M. J. P., D. Brinza, and P. A. Pevzner. 2009. De novo fragment assembly with short mate-paired reads: does the read length matter? Genome Res. 19:336-346.
3. Chen, W., et al. 2010. Characterization of the tunicamycin gene cluster unveiling unique steps involved in its biosynthesis. Protein Cell 1:1093-1105.
4. Eckardt, K. 1983. Tunicamycins, streptovirudins, and corynetoxins, a special subclass of nucleoside antibiotics. J. Nat. Prod. 46:544-550.
5. Hyatt, D., et al. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119.
6. Li, B., and C. T. Walsh. 2010. Identification of the gene cluster for the dithiolopyrrolone antibiotic holomycin in Streptomyces clavuligerus. Proc. Natl. Acad. Sci. U. S. A. 46:9731-19735.
7. Li, R., et al. 2010. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20:265-272.
8. Margulies, M., et al. 2005. Genome sequencing in microfabricated highdensity picolitre reactors. Nature 437:376-380.
9. Mellado, E., et al. 2002. The clavulanic acid biosynthetic cluster of Streptomyces clavuligerus: genetic organization of the region upstream of the car gene. Microbiology 148:1427-1438.
10. Tamura, G. 1982. Tunicamycins, p. 10-31. Japan Scientific Press, Tokyo, Japan.
11. Tsvetanova, B. C., D. J. Kiemle, and N. P. J. Price. 2002. Biosynthesis of tunicamycin and metabolic origin of the 11-carbon dialdose sugar, tunicamine. J. Biol. Chem. 38:35289-35296.
12. Wu, Q., et al. 2011. Characterization of the biosynthesis gene cluster for the pyrrole polyether antibiotic calcimycin (A23187) in Streptomyces chartreusis NRRL 3882. Antimicrob. Agents Chemother. 55:974-982.
13. Wyszynski, F. J., et al. 2010. Dissecting tunicamycin biosynthesis by genome mining: cloning and heterologous expression of a minimal gene cluster. Chem. Sci. 1:581-589.
14. Xu, Z., et al. 2005. Biosynthesis of the antitumor agent chartreusin involves the oxidative rearrangement of an anthracyclic polyketide. Chem. Biol. 12: 579-588.
15. Zerbino, D. R., and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.