Genome sequence of Sphingomonas elodea ATCC 31461, a highly productive industrial strain of gellan gum

Journal of Bacteriology

Volumn 193, Issue 24, 2011, Pages 7015-7016

  Gai, Zhonghui ^a   Wang, Xia ^b   Zhang, Xiaoyun ^a   Su, Fei ^a   Wang, Xiaoyu ^a   Tang, Hongzhi ^a   Tai, Cui ^a   Tao, Fei ^a   Ma, Cuiqing ^b   Xu, Ping ^a  

^a Shanghai Jiao Tong University   (China)

^b SHANDONG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; GELLAN; SUGAR;

BACTERIAL GENOME; BACTERIAL METABOLISM; BACTERIAL STRAIN; CARBOHYDRATE METABOLISM; CONTROLLED STUDY; GENE SEQUENCE; NONHUMAN; NOTE; NOVOSPHINGOBIUM AROMATICIVORANS; PRIORITY JOURNAL; SPHINGOMONAS; SPHINGOPYXIS ALASKENSIS; SPHINGOPYXIS WITTICHII; STRAIN DIFFERENCE;

BASE SEQUENCE; GENOME, BACTERIAL; INDUSTRIAL MICROBIOLOGY; MOLECULAR SEQUENCE DATA; POLYSACCHARIDES, BACTERIAL; SPHINGOMONAS;

SPHINGOMONAS ELODEA;

EID: 84862908012     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.06307-11     Document Type: Note

References (14)

1. Aziz, R. K., et al. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
2. Fialho, A. M., et al. 1999. Structures and properties of gellan polymers produced by Sphingomonas paucimobilis ATCC 31461 from lactose compared with those produced from glucose and from cheese whey. Appl. Environ. Microbiol. 65:2485-2491.
3. Fialho, A. M., et al. 2008. Occurrence, production, and applications of gellan: current state and perspectives. Appl. Microbiol. Biotechnol. 79:889-900.
4. Gai, Z. H., et al. 2011. Genome sequence of Sphingobium yanoikuyae XLDN2-5, an efficient carbazole-degrading strain. J. Bacteriol. 193:6404-6405.
5. Harding, N. E., Y. N. Patel, and R. J. Coleman. 2004. Organization of genes required for gellan polysaccharide biosynthesis in Sphingomonas elodea ATCC 31461. J. Ind. Microbiol. Biotechnol. 31:70-82.
6. Marques, A. R., P. B. Ferreira, I. Sá-Correia, and A. M. Fialho. 2003. Characterization of the ugpG gene encoding a UDP-glucose pyrophosphorylase from the gellan gum producer Sphingomonas paucimobilis ATCC 31461. Mol. Genet. Genomics 268:816-824.
7. Pollock, T. J. 1993. Gellan-related polysaccharides and the genus Sphingomonas. J. Gen. Microbiol. 139:1939-1945.
8. Pruitt, K. D., T. Tatusova, W. Klimke, and D. R. Maglott. 2009. NCBI reference sequences: current status, policy and new initiatives. Nucleic Acids Res. 37:D32-D36.
9. Sá-Correia, I., et al. 2002. Gellan gum biosynthesis in Sphingomonas paucimobilis ATCC 31461: genes, enzymes and exopolysaccharide production engineering. J. Ind. Microbiol. Biotechnol. 29:170-176.
10. Sutherland, I. W. 1998. Novel and established applications of microbial polysaccharides. Trends Biotechnol. 16:41-46.
11. Takeuchi, M., K. Hamana, and A. Hiraishi. 2001. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium, and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int. J. Syst. Evol. Microbiol. 51:1405-1417.
12. Videira, P. A., L. L. Cortes, A. M. Fialho, and I. Sá-Correia. 2000. Identification of the pgmG gene, encoding a bifunctional protein with phosphoglucomutase and phosphomannomutase activities, in the gellan gum-producing strain Sphingomonas paucimobilis ATCC 31461. Appl. Environ. Microbiol. 66:2252-2258.
13. Wang, X., et al. 2006. Modeling for gellan gum production by Sphingomonas paucimobilis ATCC 31461 in a simplified medium. Appl. Environ. Microbiol. 72:3367-3374.
14. Zerbino, D. R., and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.