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Volumn 163, Issue 1, 2012, Pages 7-14

Normalizing for biology: Accounting for technical and biological variation in levels of reference gene and insulin-like growth factor 1 (igf1) transcripts in fish livers

Author keywords

Fish; Growth; Housekeeping gene; IGF1; Liver; MRNA; Reference gene; RNA:DNA ratio

Indexed keywords

DNA; SOMATOMEDIN C;

EID: 84862906908     PISSN: 10956433     EISSN: 15314332     Source Type: Journal    
DOI: 10.1016/j.cbpa.2012.04.014     Document Type: Article
Times cited : (8)

References (33)
  • 1
    • 0028256537 scopus 로고
    • A comparison of rna concentrations and ornithine decarboxylase activity in Atlantic Salmon (Salmo-salar) muscle-tissue, with respect to specific growth-rates and diel variations
    • Arndt S.K.A., Benfey T.J., Cunjak R.A. A comparison of rna concentrations and ornithine decarboxylase activity in Atlantic Salmon (Salmo-salar) muscle-tissue, with respect to specific growth-rates and diel variations. Fish Physiol. Biochem. 1994, 13:463-471.
    • (1994) Fish Physiol. Biochem. , vol.13 , pp. 463-471
    • Arndt, S.K.A.1    Benfey, T.J.2    Cunjak, R.A.3
  • 2
    • 33845530533 scopus 로고    scopus 로고
    • MRNA expression patterns for GH, PRL, SL, TGF-I and IGF-II during altered feeding status in rabbitfish, Siganus guttatus
    • Ayson F.G., de Jesus-Ayson E.G.T., Takemura A. mRNA expression patterns for GH, PRL, SL, TGF-I and IGF-II during altered feeding status in rabbitfish, Siganus guttatus. Gen. Comp. Endocrinol. 2007, 150:196-204.
    • (2007) Gen. Comp. Endocrinol. , vol.150 , pp. 196-204
    • Ayson, F.G.1    de Jesus-Ayson, E.G.T.2    Takemura, A.3
  • 3
    • 79958820975 scopus 로고    scopus 로고
    • Metabolic responses to prolonged starvation, food restriction, and refeeding in the brown trout, Salmo trutta: oxidative stress and antioxidant defenses
    • Bayir A., Sirkecioglu A.N., Bayir M., Haliloglu H.I. Metabolic responses to prolonged starvation, food restriction, and refeeding in the brown trout, Salmo trutta: oxidative stress and antioxidant defenses. Comp. Biochem. Physiol. B 2011, 159:191-196.
    • (2011) Comp. Biochem. Physiol. B , vol.159 , pp. 191-196
    • Bayir, A.1    Sirkecioglu, A.N.2    Bayir, M.3    Haliloglu, H.I.4
  • 4
    • 78650678999 scopus 로고    scopus 로고
    • Perspectives on concordant and discordant relations between insulin-like growth factor 1 (IGF1) and growth in fishes
    • Beckman B.R. Perspectives on concordant and discordant relations between insulin-like growth factor 1 (IGF1) and growth in fishes. Gen. Comp. Endocrinol. 2010, 170:233-252.
    • (2010) Gen. Comp. Endocrinol. , vol.170 , pp. 233-252
    • Beckman, B.R.1
  • 5
    • 0006932312 scopus 로고
    • The sequential restoration of plasma metabolite levels, liver compostioin and liver structure in refed carp, Cyprinus carpio
    • Bohm R., Hanke W., Segner H. The sequential restoration of plasma metabolite levels, liver compostioin and liver structure in refed carp, Cyprinus carpio. J. Comp. Physiol. B 1994, 164:32-41.
    • (1994) J. Comp. Physiol. B , vol.164 , pp. 32-41
    • Bohm, R.1    Hanke, W.2    Segner, H.3
  • 6
    • 26844512816 scopus 로고    scopus 로고
    • Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis
    • Bustin S.A., Mueller R. Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis. Clin. Sci. 2005, 109:365-369.
    • (2005) Clin. Sci. , vol.109 , pp. 365-369
    • Bustin, S.A.1    Mueller, R.2
  • 8
    • 77649233414 scopus 로고    scopus 로고
    • Why the need for qPCR publication guidelines? -the case for MIQE
    • Bustin S.A. Why the need for qPCR publication guidelines? -the case for MIQE. Methods 2010, 50:217-226.
    • (2010) Methods , vol.50 , pp. 217-226
    • Bustin, S.A.1
  • 9
    • 79955531827 scopus 로고    scopus 로고
    • Normalizing RT-qPCR Data: are we getting the right answers? An appraisal of normalization approaches and internal reference genes from a case study in the finfish Lates calcarifer
    • De Santis C., Smith-Keune C., Jerry D.R. Normalizing RT-qPCR Data: are we getting the right answers? An appraisal of normalization approaches and internal reference genes from a case study in the finfish Lates calcarifer. Mar. Biotechnol. 2011, 13:170-180.
    • (2011) Mar. Biotechnol. , vol.13 , pp. 170-180
    • De Santis, C.1    Smith-Keune, C.2    Jerry, D.R.3
  • 10
    • 0027731480 scopus 로고
    • Nutritional regulation of insulin-like growth factor-I mRNA expression in salmon tissues
    • Duan C., Plisetskaya E.M. Nutritional regulation of insulin-like growth factor-I mRNA expression in salmon tissues. J. Endocrinol. 1993, 139:243-252.
    • (1993) J. Endocrinol. , vol.139 , pp. 243-252
    • Duan, C.1    Plisetskaya, E.M.2
  • 11
    • 33751064910 scopus 로고    scopus 로고
    • Coordinated regulation of the GH/IGF system genes during refeeding in rainbow trout (Oncorhynchus mykiss)
    • Gabillard J.C., Kamangar B.B., Montserrat N. Coordinated regulation of the GH/IGF system genes during refeeding in rainbow trout (Oncorhynchus mykiss). J. Endocrinol. 2006, 191:15-24.
    • (2006) J. Endocrinol. , vol.191 , pp. 15-24
    • Gabillard, J.C.1    Kamangar, B.B.2    Montserrat, N.3
  • 12
    • 3242860270 scopus 로고
    • Effect of starvation on the composition of the liver cell
    • Harrison M.F. Effect of starvation on the composition of the liver cell. Biochem. J. 1953, 55:204-211.
    • (1953) Biochem. J. , vol.55 , pp. 204-211
    • Harrison, M.F.1
  • 13
    • 85027922918 scopus 로고    scopus 로고
    • Effects of short-term starvation on ghrelin, GH-IGF system, and IGF-binding proteins in Atlantic salmon
    • Hevroy E.M., Azpeleta C., Shimizu M., Kaiya H., Espe M., Olsvik P.A. Effects of short-term starvation on ghrelin, GH-IGF system, and IGF-binding proteins in Atlantic salmon. Fish Physiol. Biochem. 2011, 37:217-232.
    • (2011) Fish Physiol. Biochem. , vol.37 , pp. 217-232
    • Hevroy, E.M.1    Azpeleta, C.2    Shimizu, M.3    Kaiya, H.4    Espe, M.5    Olsvik, P.A.6
  • 14
    • 84971105824 scopus 로고
    • The effect of pre-fasting diet and water temperature on liver-glycogen and liver weight in rainbow-trout, Salmo gairdneri Richardson, during fasting
    • Hilton J.W. The effect of pre-fasting diet and water temperature on liver-glycogen and liver weight in rainbow-trout, Salmo gairdneri Richardson, during fasting. J. Fish Biol. 1982, 20:69-78.
    • (1982) J. Fish Biol. , vol.20 , pp. 69-78
    • Hilton, J.W.1
  • 15
    • 33745280925 scopus 로고    scopus 로고
    • Changes in mRNAs encoding steroidogenic acute regulatory protein, steroidogenic enzymes and receptors for gonadotropins during spermatogenesis in rainbow trout testes
    • Kusakabe M., Nakamura I., Evans J., Swanson P., Young G. Changes in mRNAs encoding steroidogenic acute regulatory protein, steroidogenic enzymes and receptors for gonadotropins during spermatogenesis in rainbow trout testes. J. Endocrinol. 2006, 189:541-554.
    • (2006) J. Endocrinol. , vol.189 , pp. 541-554
    • Kusakabe, M.1    Nakamura, I.2    Evans, J.3    Swanson, P.4    Young, G.5
  • 16
    • 0034857060 scopus 로고    scopus 로고
    • The effect of low temperature and fasting during winter on metabolic stores and endocrine physiology (insulin, insulin-like growth factor-I, and thyroxine) of coho salmon, Oncorhynchus kisutch
    • Larsen D.A., Beckman B.R., Dickhoff W.W. The effect of low temperature and fasting during winter on metabolic stores and endocrine physiology (insulin, insulin-like growth factor-I, and thyroxine) of coho salmon, Oncorhynchus kisutch. Gen. Comp. Endocrinol. 2001, 123:308-323.
    • (2001) Gen. Comp. Endocrinol. , vol.123 , pp. 308-323
    • Larsen, D.A.1    Beckman, B.R.2    Dickhoff, W.W.3
  • 17
    • 77953364066 scopus 로고    scopus 로고
    • Regulation of pituitary GnRH receptor and gonadotropin subunits by IGF1 and GnRH in prepubertal male coho salmon
    • Luckenbach J.A., Dickey J.T., Swanson P. Regulation of pituitary GnRH receptor and gonadotropin subunits by IGF1 and GnRH in prepubertal male coho salmon. Gen. Comp. Endocrinol. 2010, 167:387-396.
    • (2010) Gen. Comp. Endocrinol. , vol.167 , pp. 387-396
    • Luckenbach, J.A.1    Dickey, J.T.2    Swanson, P.3
  • 18
    • 0024881050 scopus 로고
    • Effects of feeding regime on food-consumption, growth-rates and tissue nucleic-acids in juvenile arctic charr, Salvelinus-alpinus, with particular respect to compensatory growth
    • Miglavs I., Jobling M. Effects of feeding regime on food-consumption, growth-rates and tissue nucleic-acids in juvenile arctic charr, Salvelinus-alpinus, with particular respect to compensatory growth. J. Fish Biol. 1989, 34:947-957.
    • (1989) J. Fish Biol. , vol.34 , pp. 947-957
    • Miglavs, I.1    Jobling, M.2
  • 19
    • 8444249345 scopus 로고    scopus 로고
    • Salmon spawning migration and muscle protein metabolism: the August Krogh principle at work
    • Mommsen T.P. Salmon spawning migration and muscle protein metabolism: the August Krogh principle at work. Comp. Biochem. Physiol. B 2004, 139:383-400.
    • (2004) Comp. Biochem. Physiol. B , vol.139 , pp. 383-400
    • Mommsen, T.P.1
  • 21
    • 63449099563 scopus 로고    scopus 로고
    • Molecular characterization, tissue distribution patterns and nutritional regulation of IGFBP-1, -2, -3 and -5 in yellowtail, Seriola quinqueradiata
    • Pedroso F.L., Fukada H., Toshiro M. Molecular characterization, tissue distribution patterns and nutritional regulation of IGFBP-1, -2, -3 and -5 in yellowtail, Seriola quinqueradiata. Gen. Comp. Endocrinol. 2009, 161:344-353.
    • (2009) Gen. Comp. Endocrinol. , vol.161 , pp. 344-353
    • Pedroso, F.L.1    Fukada, H.2    Toshiro, M.3
  • 22
    • 33646378402 scopus 로고    scopus 로고
    • Discordant regulation of hepatic IGF-I mRNA and circulating IGF-I during compensatory growth in a teleost, the hybrid striped bass (Morone chrysops x Morone saxatilis)
    • Picha M.E., Silverstein J.T., Borski R.J. Discordant regulation of hepatic IGF-I mRNA and circulating IGF-I during compensatory growth in a teleost, the hybrid striped bass (Morone chrysops x Morone saxatilis). Gen. Comp. Endocrinol. 2006, 147:196-205.
    • (2006) Gen. Comp. Endocrinol. , vol.147 , pp. 196-205
    • Picha, M.E.1    Silverstein, J.T.2    Borski, R.J.3
  • 23
    • 55049141888 scopus 로고    scopus 로고
    • Regulation of endocrine and paracrine sources of Igfs and Gh receptor during compensatory growth in hybrid striped bass (Morone chrysopsXMorone saxatilis)
    • Picha M.E., Turano M.J., Tipsmark C.K., Borski R.J. Regulation of endocrine and paracrine sources of Igfs and Gh receptor during compensatory growth in hybrid striped bass (Morone chrysopsXMorone saxatilis). J. Endocrinol. 2008, 199:81-94.
    • (2008) J. Endocrinol. , vol.199 , pp. 81-94
    • Picha, M.E.1    Turano, M.J.2    Tipsmark, C.K.3    Borski, R.J.4
  • 24
    • 43049091863 scopus 로고    scopus 로고
    • Endocrine biomarkers of growth and applications to aquaculture: A mini review of growth hormone, insulin-like growth factor (IGF)-I and IGF-binding proteins as potential growth indicators in fish
    • Picha M.E., Turano M.J., Beckman B.R., Borski R.J. Endocrine biomarkers of growth and applications to aquaculture: A mini review of growth hormone, insulin-like growth factor (IGF)-I and IGF-binding proteins as potential growth indicators in fish. N. Am. J. Aquacult. 2008, 70:196-211.
    • (2008) N. Am. J. Aquacult. , vol.70 , pp. 196-211
    • Picha, M.E.1    Turano, M.J.2    Beckman, B.R.3    Borski, R.J.4
  • 25
    • 0347320652 scopus 로고    scopus 로고
    • A quantitative real-time RT-PCR assay for salmon IGF-I mRNA, and its application in the study of GH regulation of IGF-I gene expression in primary culture of salmon hepatocytes
    • Pierce A.L., Dickey J.T., Larsen D.A., Fukada H., Swanson P., Dickhoff W.W. A quantitative real-time RT-PCR assay for salmon IGF-I mRNA, and its application in the study of GH regulation of IGF-I gene expression in primary culture of salmon hepatocytes. Gen. Comp. Endocrinol. 2004, 135:401-411.
    • (2004) Gen. Comp. Endocrinol. , vol.135 , pp. 401-411
    • Pierce, A.L.1    Dickey, J.T.2    Larsen, D.A.3    Fukada, H.4    Swanson, P.5    Dickhoff, W.W.6
  • 26
    • 11444250865 scopus 로고    scopus 로고
    • Time course of the GH/IGF axis response to fasting and increased ration in chinook salmon (Oncorhynchus tshawytscha)
    • Pierce A.L., Shimizu M., Beckman B.R., Baker D.M., Dickhoff W.W. Time course of the GH/IGF axis response to fasting and increased ration in chinook salmon (Oncorhynchus tshawytscha). Gen. Comp. Endocrinol. 2005, 140:192-202.
    • (2005) Gen. Comp. Endocrinol. , vol.140 , pp. 192-202
    • Pierce, A.L.1    Shimizu, M.2    Beckman, B.R.3    Baker, D.M.4    Dickhoff, W.W.5
  • 27
    • 0033845242 scopus 로고    scopus 로고
    • The effect of food deprivation and refeeding on the liver, thyroid hormones, and transthyretin in sea bream
    • Power D.M., Melo J., Santos C.R.A. The effect of food deprivation and refeeding on the liver, thyroid hormones, and transthyretin in sea bream. J. Fish Biol. 2000, 56:374-387.
    • (2000) J. Fish Biol. , vol.56 , pp. 374-387
    • Power, D.M.1    Melo, J.2    Santos, C.R.A.3
  • 28
    • 0001251386 scopus 로고
    • Electron microscopical investigations on starvation-induced liver pathology in flounders Platichthys flesus
    • Segner H., Moller H. Electron microscopical investigations on starvation-induced liver pathology in flounders Platichthys flesus. Mar. Ecol. Prog. Ser. 1984, 19:193-196.
    • (1984) Mar. Ecol. Prog. Ser. , vol.19 , pp. 193-196
    • Segner, H.1    Moller, H.2
  • 29
    • 68049103317 scopus 로고    scopus 로고
    • Postprandial changes in plasma growth hormone, insulin, insulin-like growth factor (IGF)-1 and IGF-binding proteins in coho salmon fasted for varying periods
    • Shimizu M., Cooper K.A., Dickhoff W.W., Beckman B.R. Postprandial changes in plasma growth hormone, insulin, insulin-like growth factor (IGF)-1 and IGF-binding proteins in coho salmon fasted for varying periods. Am. J. Physiol. 2009, 297:352-361.
    • (2009) Am. J. Physiol. , vol.297 , pp. 352-361
    • Shimizu, M.1    Cooper, K.A.2    Dickhoff, W.W.3    Beckman, B.R.4
  • 30
    • 52149099642 scopus 로고    scopus 로고
    • Stability of reference genes for real-time PCR analyses in channel catfish (Ictalurus punctatus) tissues under varying physiological conditions
    • Small B.C., Murdock C.A., Bilodeau-Bourgeois A.L., Peterson B.C., Waldbieser G.C. Stability of reference genes for real-time PCR analyses in channel catfish (Ictalurus punctatus) tissues under varying physiological conditions. Comp. Biochem. Physiol. B 2008, 151:296-304.
    • (2008) Comp. Biochem. Physiol. B , vol.151 , pp. 296-304
    • Small, B.C.1    Murdock, C.A.2    Bilodeau-Bourgeois, A.L.3    Peterson, B.C.4    Waldbieser, G.C.5
  • 31
    • 0343263865 scopus 로고
    • Effect of different diets on the ultrastructure of hepatocytes of Chanos-chanos fry (Chanidae, Teleostei) - an electron-microscopic and morphometric analysis
    • Storch V., Stahlin W., Juario J.V. Effect of different diets on the ultrastructure of hepatocytes of Chanos-chanos fry (Chanidae, Teleostei) - an electron-microscopic and morphometric analysis. Mar. Biol. 1983, 74:101-104.
    • (1983) Mar. Biol. , vol.74 , pp. 101-104
    • Storch, V.1    Stahlin, W.2    Juario, J.V.3
  • 32
    • 33645988855 scopus 로고    scopus 로고
    • The comparative physiology of food deprivation: from feast to famine
    • Wang T., Hung C.C.Y., Randall D.J. The comparative physiology of food deprivation: from feast to famine. Annu. Rev. Physiol. 2006, 68:223-251.
    • (2006) Annu. Rev. Physiol. , vol.68 , pp. 223-251
    • Wang, T.1    Hung, C.C.Y.2    Randall, D.J.3
  • 33
    • 16844386223 scopus 로고    scopus 로고
    • Insulin-like growth factor signaling in fish
    • Wood A.W., Duan C., Bern H.A. Insulin-like growth factor signaling in fish. Int. Rev. Cytol. 2005, 243:215-285.
    • (2005) Int. Rev. Cytol. , vol.243 , pp. 215-285
    • Wood, A.W.1    Duan, C.2    Bern, H.A.3


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