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Volumn 29, Issue 1, 2012, Pages 21-24

The genomic signature of splicing-coupled selection differs between long and short introns

Author keywords

Genome evolution; Intron length; Selection

Indexed keywords

MESSENGER RNA;

EID: 84862901470     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msr201     Document Type: Article
Times cited : (25)

References (27)
  • 1
    • 27144491328 scopus 로고    scopus 로고
    • Adaptive evolution of non-coding DNA in Drosophila
    • DOI 10.1038/nature04107, PII N04107
    • Andolfatto P. 2005. Adaptive evolution of non-coding DNA in Drosophila. Nature 437:1149-1152. (Pubitemid 41509351)
    • (2005) Nature , vol.437 , Issue.7062 , pp. 1149-1152
    • Andolfatto, P.1
  • 2
    • 0028895417 scopus 로고
    • Exon recognition in vertebrate splicing
    • Berget SM. 1995. Exon recognition in vertebrate splicing. J Biol Chem. 270:2411-2414.
    • (1995) J Biol Chem. , vol.270 , pp. 2411-2414
    • Berget, S.M.1
  • 4
    • 22144486964 scopus 로고    scopus 로고
    • Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements
    • DOI 10.1534/genetics.104.039701
    • Burnette JM, Miyamoto-Sato E, Schaub MA, Conklin J, Lopez AJ. 2005. Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements. Genetics 170:661-674. (Pubitemid 40980668)
    • (2005) Genetics , vol.170 , Issue.2 , pp. 661-674
    • Burnette, J.M.1    Miyamoto-Sato, E.2    Schaub, M.A.3    Conklin, J.4    Lopez, A.J.5
  • 5
    • 0345035503 scopus 로고    scopus 로고
    • Intron size and natural selection
    • Carvalho AB, Clark AG. 1999. Intron size and natural selection. Nature 401:344.
    • (1999) Nature , vol.401 , pp. 344
    • Carvalho, A.B.1    Clark, A.G.2
  • 6
    • 77952581343 scopus 로고    scopus 로고
    • The organization of nucleosomes around splice sites
    • Chen W, Luo L, Zhang L. 2010. The organization of nucleosomes around splice sites. Nucleic Acids Res. 38:2788-2798.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2788-2798
    • Chen, W.1    Luo, L.2    Zhang, L.3
  • 7
    • 35248901812 scopus 로고    scopus 로고
    • Gene expression, intron density, and splice site strength in Drosophila and Caenorhabditis
    • DOI 10.1007/s00239-007-9015-y
    • Fahey M, Higgins D. 2007. Gene expression, intron density, and splice site strength in Drosophila and Caenorhabditis. J Mol Evol. 65(3):349-357. (Pubitemid 47561693)
    • (2007) Journal of Molecular Evolution , vol.65 , Issue.3 , pp. 349-357
    • Fahey, M.E.1    Higgins, D.G.2
  • 9
    • 25844481290 scopus 로고    scopus 로고
    • Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
    • Haddrill PR, Charlesworth B, Halligan DL, Andolfatto P. 2005. Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content. Genome Biol. 6:R67.
    • (2005) Genome Biol. , vol.6
    • Haddrill, P.R.1    Charlesworth, B.2    Halligan, D.L.3    Andolfatto, P.4
  • 10
    • 0038586484 scopus 로고    scopus 로고
    • The effects of selection against spurious transcription factor binding sites
    • DOI 10.1093/molbev/msg096
    • Hahn MW, Stajich JE, Wray GA. 2003. The effects of selection against spurious transcription factor binding sites. Mol Biol Evol. 20:901-906. (Pubitemid 36578716)
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.6 , pp. 901-906
    • Hahn, M.W.1    Stajich, J.E.2    Wray, G.A.3
  • 11
    • 33745612972 scopus 로고    scopus 로고
    • Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison
    • DOI 10.1101/gr.5022906
    • Halligan DL, Keightley PD. 2006. Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison. Genome Res. 16:875-884. (Pubitemid 43992911)
    • (2006) Genome Research , vol.16 , Issue.7 , pp. 875-884
    • Halligan, D.L.1    Keightley, P.D.2
  • 12
    • 38349127601 scopus 로고    scopus 로고
    • Combinatorial control of exon recognition
    • Hertel KJ. 2008. Combinatorial control of exon recognition. J Biol Chem. 283:1211-1215.
    • (2008) J Biol Chem. , vol.283 , pp. 1211-1215
    • Hertel, K.J.1
  • 13
    • 77950643284 scopus 로고    scopus 로고
    • Competing upstream 5# splice sites enhance the rate of proximal splicing
    • Hicks MJ, Mueller WF, Shepard PJ, Hertel KJ. 2010. Competing upstream 5# splice sites enhance the rate of proximal splicing. Mol Cell Biol. 30(8):1878-1886.
    • (2010) Mol Cell Biol. , vol.30 , Issue.8 , pp. 1878-1886
    • Hicks, M.J.1    Mueller, W.F.2    Shepard, P.J.3    Hertel, K.J.4
  • 14
    • 34250707188 scopus 로고    scopus 로고
    • Coevolution of genomic intron number and splice sites
    • DOI 10.1016/j.tig.2007.04.001, PII S0168952507001229
    • Irimia M, Penny D, Roy SW. 2007. Coevolution of genomic intron number and splice sites. Trends Genet. 23:321-325. (Pubitemid 46962797)
    • (2007) Trends in Genetics , vol.23 , Issue.7 , pp. 321-325
    • Irimia, M.1    Penny, D.2    Roy, S.W.3
  • 16
    • 38349125022 scopus 로고    scopus 로고
    • Translational control of intron splicing in eukaryotes
    • (19 co-Authors
    • Jaillon O, Bouhouche K, Gout J, et al. (19 co-Authors). 2008. Translational control of intron splicing in eukaryotes. Nature 451:359-362.
    • (2008) Nature , vol.451 , pp. 359-362
    • Jaillon, O.1    Bouhouche, K.2    Gout, J.3
  • 17
    • 70449629063 scopus 로고    scopus 로고
    • Large introns in relation to alternative splicing and gene evolution: A case study of Drosophila bruno-3
    • Kandul NP, Noor MA. 2009. Large introns in relation to alternative splicing and gene evolution: A case study of Drosophila bruno-3. BMC Genet. 10:67.
    • (2009) BMC Genet. , vol.10 , pp. 67
    • Kandul, N.P.1    Noor, M.A.2
  • 20
    • 0347361692 scopus 로고    scopus 로고
    • Selective constraints on intron evolution in drosophila
    • Parsch J. 2003. Selective constraints on intron evolution in Drosophila. Genetics. 165:1843-1851. (Pubitemid 38040274)
    • (2003) Genetics , vol.165 , Issue.4 , pp. 1843-1851
    • Parsch, J.1
  • 21
    • 77952800173 scopus 로고    scopus 로고
    • On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila
    • Parsch J, Novozhilov S, Saminadin-Peter SS, Wong KM, Andolfatto P. 2010. On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila. Mol Biol Evol. 27(6):1226-1234.
    • (2010) Mol Biol Evol. , vol.27 , Issue.6 , pp. 1226-1234
    • Parsch, J.1    Novozhilov, S.2    Saminadin-Peter, S.S.3    Wong, K.M.4    Andolfatto, P.5
  • 24
    • 0033846543 scopus 로고    scopus 로고
    • Multiple splicing defects in an intronic false exon
    • DOI 10.1128/MCB.20.17.6414-6425.2000
    • Sun H, Chasin LA. 2000. Multiple splicing defects in an intronic false exon. Mol Cell Biol. 20:6414-6425. (Pubitemid 30650229)
    • (2000) Molecular and Cellular Biology , vol.20 , Issue.17 , pp. 6414-6425
    • Sun, H.1    Chasin, L.A.2
  • 25
    • 0028288693 scopus 로고
    • Intron definition in splicing of small Drosophila introns
    • Talerico M, Berget SM. 1994. Intron definition in splicing of small Drosophila introns. Mol Cell Biol. 14:3434-3445. (Pubitemid 24132754)
    • (1994) Molecular and Cellular Biology , vol.14 , Issue.5 , pp. 3434-3445
    • Talerico, M.1    Berget, S.M.2
  • 26
    • 24944485118 scopus 로고    scopus 로고
    • Quasispecies theory in the context of population genetics
    • Wilke CO. 2005. Quasispecies theory in the context of population genetics. BMC Evol Biol. 5:44.
    • (2005) BMC Evol Biol. , vol.5 , pp. 44
    • Wilke, C.O.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.