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Volumn 51, Issue 25, 2012, Pages 5198-5211

On the catalytic mechanism of human ATP citrate lyase

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVE SITE; ACTIVE SITE RESIDUES; ATP-ASE ACTIVITY; ATP-CITRATE LYASE; CATALYTIC MECHANISMS; CATALYTIC ROLE; COENZYME A; COMPUTATIONAL SIMULATION; DIETHYLPYROCARBONATE; IONIZABLE GROUPS; ISOTOPE EXCHANGE; MATHEMATICAL ANALYSIS; MAXIMAL RATES; PH-DEPENDENCE; PHOSPHORYL TRANSFER; RATE-LIMITING STEPS; STEADY-STATE MEASUREMENTS; WILD TYPES;

EID: 84862893463     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi300611s     Document Type: Article
Times cited : (37)

References (51)
  • 2
    • 0014233588 scopus 로고
    • Studies on ATP citrate lyase of rat liver. 3. The reaction mechanism
    • Inoue, H., Suzuki, F., Tanioka, H., and Takeda, Y. (1968) Studies on ATP citrate lyase of rat liver. 3. The reaction mechanism J. Biochem. 63, 89-100
    • (1968) J. Biochem. , vol.63 , pp. 89-100
    • Inoue, H.1    Suzuki, F.2    Tanioka, H.3    Takeda, Y.4
  • 3
    • 0014526741 scopus 로고
    • Studies on ATP citrate lyase of rat liver. IV. The role of CoA
    • Inoue, H., Tsunemi, T., Suzuki, F., and Takeda, Y. (1969) Studies on ATP citrate lyase of rat liver. IV. The role of CoA J. Biochem. 65, 889-900
    • (1969) J. Biochem. , vol.65 , pp. 889-900
    • Inoue, H.1    Tsunemi, T.2    Suzuki, F.3    Takeda, Y.4
  • 4
    • 0018786278 scopus 로고
    • Identification of ATP citrate lyase as a phosphoprotein
    • Linn, T. C. and Srere, P. A. (1979) Identification of ATP citrate lyase as a phosphoprotein J. Biol. Chem. 254, 1691-1698
    • (1979) J. Biol. Chem. , vol.254 , pp. 1691-1698
    • Linn, T.C.1    Srere, P.A.2
  • 5
    • 0014217103 scopus 로고
    • Purification and kinetic studies of the citrate cleavage enzyme
    • Plowman, D. M. and Cleland, W. W. (1967) Purification and kinetic studies of the citrate cleavage enzyme J. Biol. Chem. 242, 4239-4247
    • (1967) J. Biol. Chem. , vol.242 , pp. 4239-4247
    • Plowman, D.M.1    Cleland, W.W.2
  • 6
    • 0013913897 scopus 로고
    • Citrate and the conversion of carbohydrate into fat. Citrate cleavage in obesity and lactation
    • Spencer, A. F. and Lowenstein, J. M. (1966) Citrate and the conversion of carbohydrate into fat. Citrate cleavage in obesity and lactation Biochem. J. 99, 760-765
    • (1966) Biochem. J. , vol.99 , pp. 760-765
    • Spencer, A.F.1    Lowenstein, J.M.2
  • 8
    • 0028902940 scopus 로고
    • Isotopomer analysis of citric acid cycle and gluconeogenesis in rat liver. Reversibility of isocitrate dehydrogenase and involvement of ATP-citrate lyase in gluconeogenesis
    • Des Rosiers, C., Di Donato, L., Comte, B., Laplante, A., Marcoux, C., David, F., Fernandez, C. A., and Brunengraber, H. (1995) Isotopomer analysis of citric acid cycle and gluconeogenesis in rat liver. Reversibility of isocitrate dehydrogenase and involvement of ATP-citrate lyase in gluconeogenesis J. Biol. Chem. 270, 10027-10036
    • (1995) J. Biol. Chem. , vol.270 , pp. 10027-10036
    • Des Rosiers, C.1    Di Donato, L.2    Comte, B.3    Laplante, A.4    Marcoux, C.5    David, F.6    Fernandez, C.A.7    Brunengraber, H.8
  • 9
    • 0015969635 scopus 로고
    • Effect of (-)-hydroxycitrate upon the accumulation of lipid in the rat: I. Lipogenesis
    • Sullivan, A. C., Triscari, J., and Halmilton, J. G. (1973) Effect of (-)-hydroxycitrate upon the accumulation of lipid in the rat: I. Lipogenesis Lipids 9, 121-128
    • (1973) Lipids , vol.9 , pp. 121-128
    • Sullivan, A.C.1    Triscari, J.2    Halmilton, J.G.3
  • 11
    • 0020474194 scopus 로고
    • 3-Fluoro-3-deoxycitrate: A probe for mechanistic study of citrate-utilizing enzymes
    • Rokita, S. E., Srere, P. A., and Walsh, C. T. (1982) 3-Fluoro-3- deoxycitrate: a probe for mechanistic study of citrate-utilizing enzymes Biochemistry 21, 3765-3774
    • (1982) Biochemistry , vol.21 , pp. 3765-3774
    • Rokita, S.E.1    Srere, P.A.2    Walsh, C.T.3
  • 12
    • 0016647269 scopus 로고
    • The enzymology of the formation and the breakdown of citrate
    • Srere, P. A. (1975) The enzymology of the formation and the breakdown of citrate Adv. Enzymol. Relat. Areas. Mol. Biol. 43, 57-101
    • (1975) Adv. Enzymol. Relat. Areas. Mol. Biol. , vol.43 , pp. 57-101
    • Srere, P.A.1
  • 13
    • 0014690773 scopus 로고
    • Citryl phosphate and the mode of action of the citrate cleavage enzyme
    • Walsh, C. T., Jr. and Spector, L. B. (1969) Citryl phosphate and the mode of action of the citrate cleavage enzyme J. Biol. Chem. 244, 4366-4374
    • (1969) J. Biol. Chem. , vol.244 , pp. 4366-4374
    • Walsh Jr., C.T.1    Spector, L.B.2
  • 14
    • 0021746740 scopus 로고
    • Purification and some kinetic properties of rat liver ATP citrate lyase
    • Houston, B. and Nimmo, H. G. (1984) Purification and some kinetic properties of rat liver ATP citrate lyase Biochem. J. 224, 437-443 (Pubitemid 15168435)
    • (1984) Biochemical Journal , vol.224 , Issue.2 , pp. 437-443
    • Houston, B.1    Nimmo, H.G.2
  • 15
    • 0017155354 scopus 로고
    • Lipogenesis from ketone bodies in rat brain. Evidence for conversion of acetoacetate into acetyl-coenzyme A in the cytosol
    • Patel, M. S. and Owen, O. E. (1976) Lipogenesis from ketone bodies in rat brain. Evidence for conversion of acetoacetate into acetyl-coenzyme A in the cytosol Biochem. J. 156, 603-607
    • (1976) Biochem. J. , vol.156 , pp. 603-607
    • Patel, M.S.1    Owen, O.E.2
  • 16
    • 0025810929 scopus 로고
    • ATP-citrate lyase from rat liver. Characterisation of the citryl-enzyme complexes
    • Wells, T. N. (1991) ATP-citrate lyase from rat liver. Characterisation of the citryl-enzyme complexes Eur. J. Biochem. 199, 163-168
    • (1991) Eur. J. Biochem. , vol.199 , pp. 163-168
    • Wells, T.N.1
  • 17
    • 0022399331 scopus 로고
    • Phosphorus-31 nuclear magnetic resonance study of the active site phosphohistidine and regulatory phosphoserine residues of rat liver ATP-citrate lyase
    • DOI 10.1021/bi00341a037
    • Williams, S. P., Sykes, B. D., and Bridger, W. A. (1985) Phosphorus-31 nuclear magnetic resonance study of the active site phosphohistidine and regulatory phosphoserine residues of rat liver ATP-citrate lyase Biochemistry 24, 5527-5531 (Pubitemid 16228834)
    • (1985) Biochemistry , vol.24 , Issue.20 , pp. 5527-5531
    • Williams, S.P.1    Sykes, B.D.2    Bridger, W.A.3
  • 18
    • 0025872905 scopus 로고
    • ATP-citrate lyase is another enzyme the histidine phosphorylation of which is inhibited by vanadate
    • Krivanek, J. and Novakova, L. (1991) ATP-citrate lyase is another enzyme the histidine phosphorylation of which is inhibited by vanadate FEBS Lett. 282, 32-34
    • (1991) FEBS Lett. , vol.282 , pp. 32-34
    • Krivanek, J.1    Novakova, L.2
  • 19
    • 0036375568 scopus 로고    scopus 로고
    • Kinetic and biochemical analyses on the reaction mechanism of a bacterial ATP-citrate lyase
    • DOI 10.1046/j.1432-1033.2002.03016.x
    • Kanao, T., Fukui, T., Atomi, H., and Imanaka, T. (2002) Kinetic and biochemical analyses on the reaction mechanism of a bacterial ATP-citrate lyase Eur. J. Biochem. 269, 3409-3416 (Pubitemid 34988983)
    • (2002) European Journal of Biochemistry , vol.269 , Issue.14 , pp. 3409-3416
    • Kanao, T.1    Fukui, T.2    Atomi, H.3    Imanaka, T.4
  • 20
    • 70449731054 scopus 로고    scopus 로고
    • Detection and analysis of protein histidine phosphorylation
    • Besant, P. G. and Attwood, P. V. (2009) Detection and analysis of protein histidine phosphorylation Mol. Cell. Biochem. 329, 93-106
    • (2009) Mol. Cell. Biochem. , vol.329 , pp. 93-106
    • Besant, P.G.1    Attwood, P.V.2
  • 21
  • 22
    • 0037072780 scopus 로고    scopus 로고
    • The identification of ATP-citrate lyase as a protein kinase B (Akt) substrate in primary adipocytes
    • Berwick, D. C., Hers, I., Heesom, K. J., Moule, S. K., and Tavare, J. M. (2002) The identification of ATP-citrate lyase as a protein kinase B (Akt) substrate in primary adipocytes J. Biol. Chem. 277, 33895-33900
    • (2002) J. Biol. Chem. , vol.277 , pp. 33895-33900
    • Berwick, D.C.1    Hers, I.2    Heesom, K.J.3    Moule, S.K.4    Tavare, J.M.5
  • 23
    • 0034620591 scopus 로고    scopus 로고
    • Phosphorylation of recombinant human ATP:citrate lyase by cAMP-dependent protein kinase abolishes homotropic allosteric regulation of the enzyme by citrate and increases the enzyme activity. Allosteric activation of atp:citrate lyase by phosphorylated sugars
    • DOI 10.1021/bi992159y
    • Potapova, I. A., El-Maghrabi, M. R., Doronin, S. V., and Benjamin, W. B. (2000) Phosphorylation of recombinant human ATP:citrate lyase by cAMP-dependent protein kinase abolishes homotropic allosteric regulation of the enzyme by citrate and increases the enzyme activity. Allosteric activation of ATP:citrate lyase by phosphorylated sugars Biochemistry 39, 1169-1179 (Pubitemid 30075348)
    • (2000) Biochemistry , vol.39 , Issue.5 , pp. 1169-1179
    • Potapova, I.A.1    El-Maghrabi, M.R.2    Doronin, S.V.3    Benjamin, W.B.4
  • 24
    • 0025102029 scopus 로고
    • Sequence of sites on ATP-citrate lyase and phosphatase inhibitor 2 phosphorylated by multifunctional protein kinase (a glycogen synthase kinase 3 like kinase)
    • DOI 10.1021/bi00485a011
    • Ramakrishna, S., D'Angelo, G., and Benjamin, W. B. (1990) Sequence of sites on ATP-citrate lyase and phosphatase inhibitor 2 phosphorylated by multifunctional protein kinase (a glycogen synthase kinase 3 like kinase) Biochemistry 29, 7617-7624 (Pubitemid 20279178)
    • (1990) Biochemistry , vol.29 , Issue.33 , pp. 7617-7624
    • Ramakirshna, S.1    D'Angelo, G.2    Benjamin, W.B.3
  • 25
    • 0029101744 scopus 로고
    • Phosphorylation of ATP-citrate lyase by nucleoside diphosphate kinase
    • Wagner, P. D. and Vu, N. D. (1995) Phosphorylation of ATP-citrate lyase by nucleoside diphosphate kinase J. Biol. Chem. 270, 21758-21764
    • (1995) J. Biol. Chem. , vol.270 , pp. 21758-21764
    • Wagner, P.D.1    Vu, N.D.2
  • 29
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227, 680-685
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 30
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal. Biochem. 72, 248-254
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 31
    • 0017089363 scopus 로고
    • A stereochemical method for detection of ATP terminal phosphate transfer in enzymatic reactions. Glutamine synthetase
    • Midelfort, C. F. and Rose, I. A. (1976) A stereochemical method for detection of ATP terminal phosphate transfer in enzymatic reactions. Glutamine synthetase J. Biol. Chem. 251, 5881-5887
    • (1976) J. Biol. Chem. , vol.251 , pp. 5881-5887
    • Midelfort, C.F.1    Rose, I.A.2
  • 33
    • 0017632673 scopus 로고
    • Modification of Histidyl Residues in Proteins by Diethylpyrocarbonate
    • in, Vol. 47, pp, Elsevier, Amsterdam.
    • Miles, E. W. (1977) Modification of Histidyl Residues in Proteins by Diethylpyrocarbonate, in Methods in Enzymology, Vol. 47, pp 431-442, Elsevier, Amsterdam.
    • (1977) Methods in Enzymology , pp. 431-442
    • Miles, E.W.1
  • 34
    • 0016734139 scopus 로고
    • Partition analysis and concept of net rate constants as tools in enzyme kinetics
    • Cleland, W. W. (1975) Partition analysis and concept of net rate constants as tools in enzyme kinetics Biochemistry 14, 3220-3224
    • (1975) Biochemistry , vol.14 , pp. 3220-3224
    • Cleland, W.W.1
  • 35
    • 0039765216 scopus 로고    scopus 로고
    • Acetyl-CoA synthetase from the amitochondriate eukaryote Giardia lamblia belongs to the newly recognized superfamily of acyl-CoA synthetases (nucleoside diphosphate-forming)
    • DOI 10.1074/jbc.275.8.5794
    • Sanchez, L. B., Galperin, M. Y., and Muller, M. (2000) Acetyl-CoA synthetase from the amitochondriate eukaryote Giardia lamblia belongs to the newly recognized superfamily of acyl-CoA synthetases (Nucleoside diphosphate-forming) J. Biol. Chem. 275, 5794-5803 (Pubitemid 30115224)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.8 , pp. 5794-5803
    • Sanchez, L.B.1    Galperin, M.Y.2    Muller, M.3
  • 36
    • 77956244445 scopus 로고    scopus 로고
    • Identification of the citrate-binding site of human ATP-citrate lyase using X-ray crystallography
    • Sun, T., Hayakawa, K., Bateman, K. S., and Fraser, M. E. Identification of the citrate-binding site of human ATP-citrate lyase using X-ray crystallography, J. Biol. Chem. 285, 27418-27428.
    • J. Biol. Chem. , vol.285 , pp. 27418-27428
    • Sun, T.1    Hayakawa, K.2    Bateman, K.S.3    Fraser, M.E.4
  • 37
    • 77049151695 scopus 로고
    • Succinyl coenzyme A and its role in phosphorylation
    • Kaufman, S. (1953) Succinyl coenzyme A and its role in phosphorylation Fed. Proc. 12, 704-708
    • (1953) Fed. Proc. , vol.12 , pp. 704-708
    • Kaufman, S.1
  • 38
    • 0006541063 scopus 로고
    • Alpha-ketoglutaric dehydrogenase. V. Guanosine diphosphate in coupled phosphorylation
    • Sanadi, D. R., Gibson, D. M., Ayengar, P., and Jacob, M. (1956) Alpha-ketoglutaric dehydrogenase. V. Guanosine diphosphate in coupled phosphorylation J. Biol. Chem. 218, 505-520
    • (1956) J. Biol. Chem. , vol.218 , pp. 505-520
    • Sanadi, D.R.1    Gibson, D.M.2    Ayengar, P.3    Jacob, M.4
  • 39
    • 0019753854 scopus 로고
    • Unity and diversity in some bacterial citric acid-cycle enzymes
    • Weitzman, P. D. (1981) Unity and diversity in some bacterial citric acid-cycle enzymes Adv. Microb. Physiol. 22, 185-244
    • (1981) Adv. Microb. Physiol. , vol.22 , pp. 185-244
    • Weitzman, P.D.1
  • 40
    • 0033614003 scopus 로고    scopus 로고
    • A detailed structural description of Escherichia coli succinyl-CoA synthetase
    • DOI 10.1006/jmbi.1998.2324
    • Fraser, M. E., James, M. N., Bridger, W. A., and Wolodko, W. T. (1999) A detailed structural description of Escherichia coli succinyl-CoA synthetase J. Mol. Biol. 285, 1633-1653 (Pubitemid 29060461)
    • (1999) Journal of Molecular Biology , vol.285 , Issue.4 , pp. 1633-1653
    • Fraser, M.E.1    James, M.N.G.2    Bridger, W.A.3    Wolodko, W.T.4
  • 41
    • 0019965179 scopus 로고
    • Escherichia coli glutamine synthetase. Determination of rate-limiting steps by rapid-quench and isotope partitioning experiments
    • DOI 10.1021/bi00538a027
    • Meek, T. D., Johnson, K. A., and Villafranca, J. J. (1982) Escherichia coli glutamine synthetase. Determination of rate-limiting steps by rapid-quench and isotope partitioning experiments Biochemistry 21, 2158-2167 (Pubitemid 12051441)
    • (1982) Biochemistry , vol.21 , Issue.9 , pp. 2158-2167
    • Meek, T.D.1    Johnson, K.A.2    Villafranca, J.J.3
  • 42
    • 0019130595 scopus 로고
    • Phosphorus-31 nuclear magnetic resonance application to positional isotope exchange reactions catalyzed by Escherichia coli carbamoyl-phosphate synthetase: Analysis of forward and reverse enzymatic reactions
    • Raushel, F. M. and Villafranca, J. J. (1980) Phosphorus-31 nuclear magnetic resonance application to positional isotope exchange reactions catalyzed by Escherichia coli carbamoyl-phosphate synthetase: analysis of forward and reverse enzymatic reactions Biochemistry 19, 3170-3174 (Pubitemid 11245548)
    • (1980) Biochemistry , vol.19 , Issue.14 , pp. 3170-3174
    • Raushel, F.M.1    Villafranca, J.J.2
  • 43
    • 42349098379 scopus 로고    scopus 로고
    • Positional isotope exchange analysis of the Mycobacterium smegmatis cysteine ligase (MshC)
    • DOI 10.1021/bi800327u
    • Williams, L., Fan, F., Blanchard, J. S., and Raushel, F. M. (2008) Positional isotope exchange analysis of the Mycobacterium smegmatis cysteine ligase (MshC) Biochemistry 47, 4843-4850 (Pubitemid 351555505)
    • (2008) Biochemistry , vol.47 , Issue.16 , pp. 4843-4850
    • Williams, L.1    Fan, F.2    Blanchard, J.S.3    Raushel, F.M.4
  • 44
    • 0028942664 scopus 로고
    • Positional isotope exchange as probe of enzyme action
    • in (Abelson, J. N. and Simmons, S. J. Eds.), pp, Academic Press, New York.
    • Mullins, L. S. and Raushell, F. M. (1995) Positional isotope exchange as probe of enzyme action, in Methol. Enzymol. (Abelson, J. N. and Simmons, S. J., Eds.), pp 398-425, Academic Press, New York.
    • (1995) Methol. Enzymol. , pp. 398-425
    • Mullins, L.S.1    Raushell, F.M.2
  • 45
    • 0023187609 scopus 로고
    • Carbamoyl-phosphate synthetase II of the mammalian CAD protein: Kinetic mechanism and elucidation of reaction intermediates by positional isotope exchange
    • DOI 10.1021/bi00383a026
    • Meek, T. D., Karsten, W. E., and DeBrosse, C. W. (1987) Carbamoyl-phosphate synthetase II of the mammalian CAD protein: kinetic mechanism and elucidation of reaction intermediates by positional isotope exchange Biochemistry 26, 2584-2593 (Pubitemid 17081489)
    • (1987) Biochemistry , vol.26 , Issue.9 , pp. 2584-2593
    • Meek, T.D.1    Karsten, W.E.2    DeBrosse, C.W.3
  • 46
    • 0019886922 scopus 로고
    • Stereochemical outcome of processing of fluorinated substrates by ATP citrate lyase and malate synthase
    • Marletta, M. A., Srere, P. A., and Walsh, C. (1981) Stereochemical outcome of processing of fluorinated substrates by ATP citrate lyase and malate synthase Biochemistry 20, 3719-3723
    • (1981) Biochemistry , vol.20 , pp. 3719-3723
    • Marletta, M.A.1    Srere, P.A.2    Walsh, C.3
  • 48
    • 33746189733 scopus 로고    scopus 로고
    • Distinct Kinetic Mechanisms of the Two Classes of Aminoacyl-tRNA Synthetases
    • DOI 10.1016/j.jmb.2006.06.015, PII S002228360600725X
    • Zhang, C. M., Perona, J. J., Ryu, K., Francklyn, C., and Hou, Y. M. (2006) Distinct kinetic mechanisms of the two classes of aminoacyl-tRNA synthetases J. Mol. Biol. 361, 300-311 (Pubitemid 44092779)
    • (2006) Journal of Molecular Biology , vol.361 , Issue.2 , pp. 300-311
    • Zhang, C.-M.1    Perona, J.J.2    Ryu, K.3    Francklyn, C.4    Hou, Y.-M.5
  • 49
    • 0019221559 scopus 로고
    • Serine activation is the rate limiting step of tRNA(Ser) aminoacylation by yeast seryl tRNA synthetase
    • Dibbelt, L., Pachmann, U., and Zachau, H. G. (1980) Serine activation is the rate limiting step of tRNASer aminoacylation by yeast seryl tRNA synthetase Nucleic Acids Res. 8, 4021-4039 (Pubitemid 11255421)
    • (1980) Nucleic Acids Research , vol.8 , Issue.17 , pp. 4021-4039
    • Dibbelt, L.1    Pachmann, U.2    Zachau, H.G.3
  • 50
    • 0019409103 scopus 로고
    • On the rate limiting step of yeast tRNA(Phe) aminoacylation
    • DOI 10.1016/0014-5793(81)80783-1
    • Dibbelt, L. and Zachau, H. G. (1981) On the rate limiting step of yeast tRNAPhe aminoacylation FEBS Lett. 129, 173-176 (Pubitemid 11037533)
    • (1981) FEBS Letters , vol.129 , Issue.1 , pp. 173-176
    • Dibbelt, L.1    Zachau, H.G.2
  • 51
    • 0033617165 scopus 로고    scopus 로고
    • Pre-steady-state reaction of 5-aminolevulinate synthase. Evidence for a rate-determining product release
    • Hunter, G. A. and Ferreira, G. C. (1999) Pre-steady-state reaction of 5-aminolevulinate synthase. Evidence for a rate-determining product release J. Biol. Chem. 274, 12222-12228
    • (1999) J. Biol. Chem. , vol.274 , pp. 12222-12228
    • Hunter, G.A.1    Ferreira, G.C.2


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