메뉴 건너뛰기




Volumn 419, Issue 2, 2012, Pages 148-153

SVM-T-RFE: A novel gene selection algorithm for identifying metastasis-related genes in colorectal cancer using gene expression profiles

Author keywords

Colorectal cancer; Gene expression profiles; Gene selection; Metastasis; Support vector machines

Indexed keywords

ALGORITHM; ARTICLE; CANCER CLASSIFICATION; CANCER STAGING; COLORECTAL CANCER; CONTROLLED STUDY; GENE EXPRESSION; HUMAN; INTERMETHOD COMPARISON; METASTASIS; MICROARRAY ANALYSIS; PREDICTION; PRIORITY JOURNAL; SUPPORT VECTOR MACHINE; SUPPORT VECTOR MACHINE RECURSIVE FEATURE ELIMINATION;

EID: 84862823682     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2012.01.087     Document Type: Article
Times cited : (42)

References (31)
  • 2
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • Guyon I., Weston J., Barnhill S., Vapnik V. Gene selection for cancer classification using support vector machines. Machine Learning 2002, 46:389-422.
    • (2002) Machine Learning , vol.46 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 3
    • 26644466101 scopus 로고    scopus 로고
    • Multiple SVM-RFE for gene selection in cancer classification with expression data
    • Duan K.B., Rajapakse J.C., Wang H.Y., Azuaje F. Multiple SVM-RFE for gene selection in cancer classification with expression data. IEEE Trans. Nanobiosci. 2005, 4:228-234.
    • (2005) IEEE Trans. Nanobiosci. , vol.4 , pp. 228-234
    • Duan, K.B.1    Rajapakse, J.C.2    Wang, H.Y.3    Azuaje, F.4
  • 5
    • 85030413794 scopus 로고    scopus 로고
    • Development of two-stage SVM-RFE gene selection strategy for microarray expression data analysis
    • Tang Y.C., Zhang Y.Q., Huang Z. Development of two-stage SVM-RFE gene selection strategy for microarray expression data analysis. IEEE-ACM Trans. Computat. Biol Bioinf. 2007, 4:365-381.
    • (2007) IEEE-ACM Trans. Computat. Biol Bioinf. , vol.4 , pp. 365-381
    • Tang, Y.C.1    Zhang, Y.Q.2    Huang, Z.3
  • 6
    • 34249855141 scopus 로고    scopus 로고
    • MSVM-RFE: extensions of SVM-RFE for multiclass gene selection on DNA microarray data (vol. 23, pg 1106
    • 2029-2029
    • Zhou X., Tuck D.P. MSVM-RFE: extensions of SVM-RFE for multiclass gene selection on DNA microarray data (vol. 23, pg 1106. Bioinformatics 2007, 23(2007). 2029-2029.
    • (2007) Bioinformatics , vol.23 , Issue.2007
    • Zhou, X.1    Tuck, D.P.2
  • 8
    • 66549087117 scopus 로고    scopus 로고
    • A Decreased Ratio of Laminin-332 beta 3 to gamma 2 Subunit mRNA is Associated with Poor Prognosis in Colon Cancer
    • Guess C.M., LaFleur B.J., Weidow B.L., Quaranta V. A Decreased Ratio of Laminin-332 beta 3 to gamma 2 Subunit mRNA is Associated with Poor Prognosis in Colon Cancer. Cancer Epidemiol. Biomarkers Prev. 2009, 18:1584-1590.
    • (2009) Cancer Epidemiol. Biomarkers Prev. , vol.18 , pp. 1584-1590
    • Guess, C.M.1    LaFleur, B.J.2    Weidow, B.L.3    Quaranta, V.4
  • 9
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • Alon U., Barkai N., Notterman D.A., Gish K., Ybarra S., Mack D., Levine A.J. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl. Acad. Sci. USA 1999, 96:6745-6750.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5    Mack, D.6    Levine, A.J.7
  • 14
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher V.G., Tibshirani R., Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA 2001, 98:5116-5121.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 15
    • 0344872506 scopus 로고    scopus 로고
    • Molecular classification of cancer types from microarray data using the combination of genetic algorithms and support vector machines
    • Peng S.H., Xu Q.H., Ling X.B., Peng X.N., Du W., Chen L.B. Molecular classification of cancer types from microarray data using the combination of genetic algorithms and support vector machines. FEBS Lett. 2003, 555:358-362.
    • (2003) FEBS Lett. , vol.555 , pp. 358-362
    • Peng, S.H.1    Xu, Q.H.2    Ling, X.B.3    Peng, X.N.4    Du, W.5    Chen, L.B.6
  • 16
    • 0035999977 scopus 로고    scopus 로고
    • A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
    • Pan W. A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics 2002, 18:546-554.
    • (2002) Bioinformatics , vol.18 , pp. 546-554
    • Pan, W.1
  • 17
    • 2942519065 scopus 로고    scopus 로고
    • Misc Functions of the Department of Statistics (e1071)
    • TU Wien. Version 1.5-8
    • E. Dimitriadou, K. Hornik, F. Leisch, D. Meyer, and A. Weingessel, Misc Functions of the Department of Statistics (e1071), TU Wien. Version 1.5-8 (2005).
    • (2005)
    • Dimitriadou, E.1    Hornik, K.2    Leisch, F.3    Meyer, D.4    Weingessel, A.5
  • 18
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang D.W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 19
    • 84960463485 scopus 로고    scopus 로고
    • Minimum redundancy feature selection from microarray gene expression data
    • Proceedings of the 2003 IEEE Bioinformatics Conference
    • C. Ding, and H.C. Peng, Minimum redundancy feature selection from microarray gene expression data. Proceedings of the 2003 IEEE Bioinformatics Conference (2003) 523-528.
    • (2003) , pp. 523-528
    • Ding, C.1    Peng, H.C.2
  • 20
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad B.M., Irizarry R.A., Astrand M., Speed T.P. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19:185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 21
    • 37349110272 scopus 로고    scopus 로고
    • Apoptotic effect of hesperidin through caspase3 activation in human colon cancer cells, SNU-C4
    • Park H.J., Kim M.J., Ha E., Chung J.H. Apoptotic effect of hesperidin through caspase3 activation in human colon cancer cells, SNU-C4. Phytomedicine 2008, 15:147-151.
    • (2008) Phytomedicine , vol.15 , pp. 147-151
    • Park, H.J.1    Kim, M.J.2    Ha, E.3    Chung, J.H.4
  • 23
    • 47549093954 scopus 로고    scopus 로고
    • New insight into the key proteins and pathways involved in the metastasis of colorectal carcinoma
    • Yu G.Z., Chen Y., Long Y.Q., Dong D., Mu X.L., Wang J.J. New insight into the key proteins and pathways involved in the metastasis of colorectal carcinoma. Oncol. Rep. 2008, 19:1191-1204.
    • (2008) Oncol. Rep. , vol.19 , pp. 1191-1204
    • Yu, G.Z.1    Chen, Y.2    Long, Y.Q.3    Dong, D.4    Mu, X.L.5    Wang, J.J.6
  • 24
    • 77952756515 scopus 로고    scopus 로고
    • Somatic mutations and losses of expression of microRNA regulation-related genes AGO2 and TNRC6A in gastric and colorectal cancers
    • Kim M.S., Oh J.E., Kim Y.R., Park S.W., Kang M.R., Kim S.S., Ahn C.H., Yoo N.J., Lee S.H. Somatic mutations and losses of expression of microRNA regulation-related genes AGO2 and TNRC6A in gastric and colorectal cancers. J. Pathol. 2010, 221:139-146.
    • (2010) J. Pathol. , vol.221 , pp. 139-146
    • Kim, M.S.1    Oh, J.E.2    Kim, Y.R.3    Park, S.W.4    Kang, M.R.5    Kim, S.S.6    Ahn, C.H.7    Yoo, N.J.8    Lee, S.H.9
  • 25
    • 9244228001 scopus 로고    scopus 로고
    • RASSF4/AD037 is a potential ras effector/tumor suppressor of the RASSF family
    • Eckfeld K., Hesson L., Vos M.D., Bieche I., Latif F., Clark G.I. RASSF4/AD037 is a potential ras effector/tumor suppressor of the RASSF family. Cancer Res. 2004, 64:8688-8693.
    • (2004) Cancer Res. , vol.64 , pp. 8688-8693
    • Eckfeld, K.1    Hesson, L.2    Vos, M.D.3    Bieche, I.4    Latif, F.5    Clark, G.I.6
  • 27
    • 79551541985 scopus 로고    scopus 로고
    • 8p12-23 and +20q are predictors of subtypes and metastatic pathways in colorectal cancer: construction of tree models using comparative genomic hybridization data
    • Li X.B., Chen J., Lu B.J., Peng S.H., Desper R., Lai M.D. 8p12-23 and +20q are predictors of subtypes and metastatic pathways in colorectal cancer: construction of tree models using comparative genomic hybridization data. Omics-a J. Integr. Biol. 2011, 15:37-47.
    • (2011) Omics-a J. Integr. Biol. , vol.15 , pp. 37-47
    • Li, X.B.1    Chen, J.2    Lu, B.J.3    Peng, S.H.4    Desper, R.5    Lai, M.D.6
  • 31
    • 75949114756 scopus 로고    scopus 로고
    • Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance
    • Park P.J., Kong S.W., Tebaldi T., Lai W.R., Kasif S., Kohane I.S. Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance. Bioinformatics 2009, 25:3121-3127.
    • (2009) Bioinformatics , vol.25 , pp. 3121-3127
    • Park, P.J.1    Kong, S.W.2    Tebaldi, T.3    Lai, W.R.4    Kasif, S.5    Kohane, I.S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.