Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress

BMC Genomics

Volumn 13, Issue 1, 2012, Pages

  An, Dong ^a,b   Yang, Jun ^b   Zhang, Peng ^a,b  

^a INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

3 OXOACYL ACYL CARRIER PROTEIN SYNTHASE; ACYL COENZYME A DESATURASE; ALPHA CRYSTALLIN; AMYLASE; CALCINEURIN; CATALASE; CATALASE 2; CHITINASE; GIBBERELLIC ACID; GLUTATHIONE TRANSFERASE; JASMONIC ACID METHYL ESTER; MALONALDEHYDE; MITOGEN ACTIVATED PROTEIN KINASE 4; MITOGEN ACTIVATED PROTEIN KINASE 9; PEROXIDASE; POLYUBIQUITIN; PROLINE; PROTEIN DNAJ; PROTEIN MYB; REACTIVE OXYGEN METABOLITE; SIGMA FACTOR; STARCH; SUCROSE; SUCROSE SYNTHASE; TRANSCRIPTION FACTOR; TRANSCRIPTOME; UBIQUITIN PROTEIN LIGASE; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; ZINC ION; HYDROGEN PEROXIDE;

ABIOTIC STRESS; ARTICLE; CARBOHYDRATE METABOLISM; CASSAVA; CHLOROPLAST; CLUSTER ANALYSIS; COLD STRESS; COLD TOLERANCE; CONTROLLED STUDY; DNA MICROARRAY; DOWN REGULATION; ENZYME ACTIVITY; GENE CLUSTER; GENE CONTROL; GENE EXPRESSION PROFILING; GENE LOCUS; GENETIC ENGINEERING; LIPID PEROXIDATION; LOW TEMPERATURE PROCEDURES; MICROARRAY ANALYSIS; NONHUMAN; PHENOTYPE; PLANT GENETICS; PLANT GROWTH; PLANT LEAF; PLANT RESPONSE; PLANT STEM; PLANT STRESS; PROTEIN EXPRESSION; REAL TIME POLYMERASE CHAIN REACTION; SHOOT; SIGNAL TRANSDUCTION; STIMULUS RESPONSE; UPREGULATION; COLD; GENE EXPRESSION REGULATION; GENETICS; MANIHOT; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGICAL STRESS; PLANT; REPRODUCIBILITY;

ARABIDOPSIS; MANIHOT ESCULENTA;

CHLOROPLASTS; CLUSTER ANALYSIS; COLD TEMPERATURE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; HYDROGEN PEROXIDE; MANIHOT; MOLECULAR SEQUENCE ANNOTATION; PHENOTYPE; PLANT SHOOTS; REACTIVE OXYGEN SPECIES; REPRODUCIBILITY OF RESULTS; SIGNAL TRANSDUCTION; STRESS, PHYSIOLOGICAL; TRANSCRIPTION FACTORS;

EID: 84862822427     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-64     Document Type: Article

References (92)

1. El-Sharkawy MA. International research on cassava photosynthesis, productivity, eco-physiology, and responses to environmental stresses in the tropics. Photosynthetica 2006, 44:481-512.
2. Cock JH. Cassava: a basic energy-source in the tropics. Science 1982, 218:755-762. 10.1126/science.7134971, 7134971.
3. Nguyen TLT, Gheewala SH, Garivait S. Full chain energy analysis of fuel ethanol from cassava in Thailand. Environ Sci Technol 2007, 41:4135-4142. 10.1021/es0620641, 17612202.
4. Huang L, Ye Z, Bell RW, Dell B. Boron nutrition and chilling tolerance of warm climate crop species. Ann Bot 2005, 96:755-767. 10.1093/aob/mci228, 16033777.
5. Chen QL, Li Z, Fan GZ, Zhu KY, Zhang W, Zhu HQ. Indications of stratospheric anomalies in the freezing rain and snow disaster in South China, 2008. Sci China Earth Sci 2011, 54:1248-1256.
6. Sanghera GS, Wani SH, Hussain W, Singh NB. Engineering cold stress tolerance in crop plants. Curr Genomics 2011, 12:30-43. 10.2174/138920211794520178, 3129041, 21886453.
7. Alves AAC. Cassava botany and physiology. Cassava: biology, production and utilization 67-89. CAB Publishing, Hillocks RJ, Thresh JM, Bellotti AC.
8. Chandler PM, Robertson M. Gene-expression regulated by abscisic-acid and its relation to stress tolerance. Annu Rev Plant Physiol Plant Mol Biol 1994, 45:113-141.
9. Lynch DV, Steponkus PL. Plasma-membrane lipid alterations associated with cold-acclimation of winter Rye seedlings (Secale-Cereale L-Cv Puma). Plant Physiol 1987, 83:761-767. 10.1104/pp.83.4.761, 1056446, 16665335.
10. Koster KL, Lynch DV. Solute accumulation and compartmentation during the cold-acclimation of Puma rye. Plant Physiol 1992, 98:108-113. 10.1104/pp.98.1.108, 1080156, 16668599.
11. Nomura M, Muramoto Y, Yasuda S, Takabe T, Kishitani S. The accumulation of glycinebetaine during cold-acclimation in early and late cultivars of barley. Euphytica 1995, 83:247-250.
12. Dorffling K, Dorffling H, Lesselich G, Luck E, Zimmermann C, Melz G, Jurgens HU. Heritable improvement of frost tolerance in winter wheat by in vitro-selection of hydroxyproline-resistant proline overproducing mutants. Euphytica 1997, 93:1-10.
13. Pennycooke JC, Cox S, Stushnoff C. Relationship of cold acclimation, total phenolic content and antioxidant capacity with chilling tolerance in petunia (Petunia x hybrida). Environ Exp Bot 2005, 53:225-232.
14. Guy CL. Cold-acclimation and freezing stress tolerance: role of protein-metabolism. Annu Rev Plant Physiol Plant Mol Biol 1990, 41:187-223.
15. Gilmour SJ, Zarka DG, Stockinger EJ, Salazar MP, Houghton JM, Thomashow MF. Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J 1998, 16:433-442. 10.1046/j.1365-313x.1998.00310.x, 9881163.
16. Fernandes J, Morrow DJ, Casati P, Walbot V. Distinctive transcriptome responses to adverse environmental conditions in Zea mays L. Plant Biotechnol J 2008, 6:782-798. 10.1111/j.1467-7652.2008.00360.x, 18643947.
17. Stanca AM, Crosatti C, Grossi M, Lacerenza NG, Rizza F, Cattivelli L. Molecular adaptation of barley to cold and drought conditions. Euphytica 1996, 92:215-219.
18. Tatusov RL, Koonin EV, Lipman DJ. A genomic perspective on protein families. Science 1997, 278:631-637. 10.1126/science.278.5338.631, 9381173.
19. Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y, Kamiya A, Nakajima M, Enju A, Sakurai T, Satou M, Akiyama K, Taji T, Yamaguchi-Shinozaki K, Carninci P, Kawai J, Hayashizaki Y, Shinozaki K. Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J 2002, 31:279-292. 10.1046/j.1365-313X.2002.01359.x, 12164808.
20. Rabbani MA, Maruyama K, Abe H, Khan MA, Katsura K, Ito Y, Yoshiwara K, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA get-blot analyses. Plant Physiol 2003, 133:1755-1767. 10.1104/pp.103.025742, 300730, 14645724.
21. Fernandez P, Di-Rienzo J, Fernandez L, Hopp HE, Paniego N, Heinz RA. Transcriptomic identification of candidate genes involved in sunflower responses to chilling and salt stresses based on cDNA microarray analysis. BMC Plant Biol 2008, 8:11. 10.1186/1471-2229-8-11, 2265713, 18221554.
22. Hughes TR, Mao M, Jones AR, Burchard J, Marton MJ, Shannon KW, Lefkowitz SM, Ziman M, Schelter JM, Meyer MR, Kobayashi S, Davis C, Dai H, He YD, Stephaniants SB, Cavet G, Walker WL, West A, Coffey E, Shoemaker DD, Stoughton R, Blanchard AP, Friend SH, Linsley PS. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat Biotechnol 2001, 19:342-347. 10.1038/86730, 11283592.
23. Leiske DL, Karimpour-Fard A, Hume PS, Fairbanks BD, Gill RT. A comparison of alternative 60-mer probe designs in an in-situ synthesized oligonucleotide microarray. BMC Genomics 2006, 7:72. 10.1186/1471-2164-7-72, 1468409, 16595014.
24. Lopez C, Jorge V, Piegu B, Mba C, Cortes D, Restrepo S, Soto M, Laudie M, Berger C, Cooke R, Delseny M, Tohme J, Verdier V. A unigene catalogue of 5700 expressed genes in cassava. Plant Mol Biol 2004, 56:541-554. 10.1007/s11103-004-0123-4, 15630618.
25. Anderson JV, Delseny M, Fregene MA, Jorge V, Mba C, Lopez C, Restrepo S, Soto M, Piegu B, Verdier V, Cooke R, Tohme J, Horvath DP. An EST resource for cassava and other species of Euphorbiaceae. Plant Mol Biol 2004, 56:527-539. 10.1007/s11103-004-5046-6, 15630617.
26. Lokko Y, Anderson JV, Rudd S, Raji A, Horvath D, Mikel MA, Kim R, Liu L, Hernandez A, Dixon AGO, Ingelbrecht IL. Characterization of an 18,166 EST dataset for cassava (Manihot esculenta Crantz) enriched for drought-responsive genes. Plant Cell Rep 2007, 26:1605-1618. 10.1007/s00299-007-0378-8, 17541599.
27. Sakurai T, Plata G, Rodriguez-Zapata F, Seki M, Salcedo A, Toyoda A, Ishiwata A, Tohme J, Sakaki Y, Shinozaki K, Ishitani M. Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response. BMC Plant Biol 2007, 7:66. 10.1186/1471-2229-7-66, 2245942, 18096061.
28. Li YZ, Pan YH, Sun CB, Dong HT, Luo XL, Wang ZQ, Tang JL, Chen BS. An ordered EST catalogue and gene expression profiles of cassava (Manihot esculenta) at key growth stages. Plant Mol Biol 2010, 74:573-590. 10.1007/s11103-010-9698-0, 20957510.
29. Reilly K, Bernal D, Cortes DF, Gomez-Vasquez R, Tohme J, Beeching JR. Towards identifying the full set of genes expressed during cassava post-harvest physiological deterioration. Plant Mol Biol 2007, 64:187-203. 10.1007/s11103-007-9144-0, 17318318.
30. Lopez C, Soto M, Restrepo S, Piegu B, Cooke R, Delseny M, Tohme J, Verdier V. Gene expression profile in response to Xanthomonas axonopodis pv. manihotis infection in cassava using a cDNA microarray. Plant Mol Biol 2005, 57:393-410. 10.1007/s11103-004-7819-3, 15830129.
31. Yang J, An D, Zhang P. Expression profiling of cassava storage roots reveals an active process of glycolysis/gluconeogenesis. J Integr Plant Biol 2011, 53:193-211. 10.1111/j.1744-7909.2010.01018.x, 21205184.
32. Hodges DM, DeLong JM, Forney CF, Prange RK. Improving the thiobarbituric acid-reactive-substances assay for estimating lipid peroxidation in plant tissues containing anthocyanin and other interfering compounds. Planta 1999, 207:604-611.
33. Hodgson RAJ, Raison JK. Lipid-peroxidation and superoxide-dismutase activity in relation to photoinhibition induced by chilling in moderate light. Planta 1991, 185:215-219.
34. Duncan DR, Widholm JM. Proline accumulation and its implication in cold tolerance of regenerable maize callus. Plant Physiol 1987, 83:703-708. 10.1104/pp.83.3.703, 1056429, 16665311.
35. Nanjo T, Kobayashi M, Yoshiba Y, Sanada Y, Wada K, Tsukaya H, Kakubari Y, Yamaguchi-Shinozaki K, Shinozaki K. Biological functions of proline in morphogenesis and osmotolerance revealed in antisense transgenic Arabidopsis thaliana. Plant J 1999, 18:185-193. 10.1046/j.1365-313X.1999.00438.x, 10363370.
36. Carvallo MA, Pino MT, Jeknic Z, Zou C, Doherty CJ, Shiu SH, Chen THH, Thomashow MF. A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana. J Exp Bot 2011, 62:3807-3819. 10.1093/jxb/err066, 3134341, 21511909.
37. Howarth CJ, Ougham HJ. Tansley review .51. Gene-expression under temperature stress. New Phytol 1993, 125:1-26.
38. Lee BH, Henderson DA, Zhu JK. The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell 2005, 17:3155-3175. 10.1105/tpc.105.035568, 1276035, 16214899.
39. Teige M, Scheikl E, Eulgem T, Doczi F, Ichimura K, Shinozaki K, Dangl JL, Hirt H. The MKK2 pathway mediates cold and salt stress signaling in Arabidopsis. Mol Cell 2004, 15:141-152. 10.1016/j.molcel.2004.06.023, 15225555.
40. Joubes J, Raffaele S, Bourdenx B, Garcia C, Laroche-Traineau J, Moreau P, Domergue F, Lessire R. The VLCFA elongase gene family in Arabidopsis thaliana: phylogenetic analysis, 3D modelling and expression profiling. Plant Mol Biol 2008, 67:547-566. 10.1007/s11103-008-9339-z, 18465198.
41. Goulas E, Schubert M, Kieselbach T, Kleczkowski LA, Gardestrom P, Schroder W, Hurry V. The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show differential sensitivity to short- and long-term exposure to low temperature. Plant J 2006, 47:720-734. 10.1111/j.1365-313X.2006.02821.x, 16923014.
42. Delk NA, Johnson KA, Chowdhury NI, Braam J. CML24, regulated in expression by diverse stimuli, encodes a potential Ca2+ sensor that functions in responses to abscisic acid, daylength, and ion stress. Plant Physiol 2005, 139:240-253. 10.1104/pp.105.062612, 1203374, 16113225.
43. Thomas SG, Phillips AL, Hedden P. Molecular cloning and functional expression of gibberellin 2-oxidases, multifunctional enzymes involved in gibberellin deactivation. Proc Natl Acad Sci USA 1999, 96:4698-4703. 10.1073/pnas.96.8.4698, 16395, 10200325.
44. Huibers RP, de Jong M, Dekter RW, Van den Ackerveken G. Disease-specific expression of host genes during downy mildew infection of Arabidopsis. Mol Plant Microbe In 2009, 22:1104-1115.
45. Perez-Rodriguez P, Riano-Pachon DM, Correa LGG, Rensing SA, Kersten B, Mueller-Roeber B. PInTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Res 2010, 38:822-827. 10.1093/nar/gkp1056, 2817470, 19934264.
46. Zou CS, Yu DQ. Analysis of the cold-responsive transcriptome in the mature pollen of Arabidopsis. J Plant Biol 2010, 53:400-416.
47. Ma SS, Bohnert HJ. Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression. Genome Biol 2007, 8.
48. Rae L, Lao NT, Kavanagh TA. Regulation of multiple aquaporin genes in Arabidopsis by a pair of recently duplicated DREB transcription factors. Planta 2011, 234:429-444. 10.1007/s00425-011-1414-z, 21509693.
49. Krishnaswamy S, Verma S, Rahman MH, Kav NNV. Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis. Plant Mol Biol 2011, 75:107-127. 10.1007/s11103-010-9711-7, 21069430.
50. Chinnusamy V, Ohta M, Kanrar S, Lee BH, Hong XH, Agarwal M, Zhu JK. ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Gene Dev 2003, 17:1043-1054. 10.1101/gad.1077503, 196034, 12672693.
51. Chen YH, Yang XY, He K, Liu MH, Li J, Gao ZF, Lin ZQ, Zhang YF, Wang XX, Qiu XM, Shen YP, Zhang L, Deng XH, Luo J, Deng XW, Chen ZL, Gu HY, Qu LJ. The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol Biol 2006, 60:107-124. 10.1007/s11103-005-2910-y, 16463103.
52. Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, Kay SA. LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc Natl Acad Sci USA 2005, 102:10387-10392. 10.1073/pnas.0503029102, 1177380, 16006522.
53. Chen YH, Yang XY, He K, Liu MH, Li JG, Gao ZF, Lin ZQ, Zhang YF, Wang XX, Qiu XM, Shen YP, Zhang L, Deng XH, Luo JC, Deng XW, Chen ZL, Gu HY, Qu LJ. The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol Biol 2006, 60:107-124. 10.1007/s11103-005-2910-y, 16463103.
54. Tian CG, Wan P, Sun SH, Li JY, Chen MS. Genome-wide analysis of the GRAS gene family in rice and Arabidopsis. Plant Mol Biol 2004, 54:519-532.
55. Bolle C. The role of GRAS proteins in plant signal transduction and development. Planta 2004, 218:683-692. 10.1007/s00425-004-1203-z, 14760535.
56. Achard P, Gong F, Cheminant S, Alioua M, Hedden P, Genschik P. The cold-inducible CBF1 factor-dependent signaling pathway modulates the accumulation of the growth-repressing DELLA proteins via its effect on gibberellin metabolism. Plant Cell 2008, 20:2117-2129. 10.1105/tpc.108.058941, 2553604, 18757556.
57. Busch W, Wunderlich M, Schoffl F. Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana. Plant J 2005, 41:1-14.
58. Dong JX, Chen CH, Chen ZX. Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response. Plant Mol Biol 2003, 51:21-37. 10.1023/A:1020780022549, 12602888.
59. Park CY, Lee JH, Yoo JH, Moon BC, Choi MS, Kang YH, Lee SM, Kim HS, Kang KY, Chung WS, Lim CO, Cho MJ. WRKY group IId transcription factors interact with calmodulin. FEBS Lett 2005, 579:1545-1550. 10.1016/j.febslet.2005.01.057, 15733871.
60. Choi HI, Hong JH, Ha JO, Kang JY, Kim SY. ABFs, a family of ABA-responsive element binding factors. J Biol Chem 2000, 275:1723-1730. 10.1074/jbc.275.3.1723, 10636868.
61. Davletova S, Schlauch K, Coutu J, Mittler R. The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol 2005, 139:847-856. 10.1104/pp.105.068254, 1256000, 16183833.
62. Taoka K, Yanagimoto Y, Daimon Y, Hibara K, Aida M, Tasaka M. The NAC domain mediates functional specificity of CUP-SHAPED COTYLEDON proteins. Plant J 2004, 40:462-473. 10.1111/j.1365-313X.2004.02238.x, 15500463.
63. Song SY, Chen Y, Chen J, Dai XY, Zhang WH. Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress. Planta 2011, 234:331-345. 10.1007/s00425-011-1403-2, 21448719.
64. Kingston-Smith AH, Harbinson J, Williams J, Foyer CH. Effect of chilling on carbon assimilation, enzyme activation, and photosynthetic electron transport in the absence of photoinhibition in maize leaves. Plant Physiol 1997, 114:1039-1046. 158392, 12223758.
65. Potuschak T, Lechner E, Parmentier Y, Yanagisawa S, Grava S, Koncz C, Genschik P. EIN3-dependent regulation of plant ethylene hormone signaling by two Arabidopsis F box proteins: EBF1 and EBF2. Cell 2003, 115:679-689. 10.1016/S0092-8674(03)00968-1, 14675533.
66. Willige BC, Ghosh S, Nill C, Zourelidou M, Dohmann EMN, Maier A, Schwechheimer C. The DELLA domain of GA INSENSITIVE mediates the interaction with the GA INSENSITIVE DWARF1A gibberellin receptor of Arabidopsis. Plant Cell 2007, 19:1209-1220. 10.1105/tpc.107.051441, 1913748, 17416730.
67. Jain M, Khurana JP. Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice. FEBS J 2009, 276:3148-3162. 10.1111/j.1742-4658.2009.07033.x, 19490115.
68. Xiong LM, Zhu JK. Regulation of abscisic acid biosynthesis. Plant Physiol 2003, 133:29-36. 10.1104/pp.103.025395, 523868, 12970472.
69. Libault M, Wan JR, Czechowski T, Udvardi M, Stacey G. Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol Plant Microbe In 2007, 20:900-911.
70. Norris SR, Barrette TR, DellaPenna D. Genetic dissection of carotenoid synthesis in Arabidopsis defines plastoquinone as an essential component of phytoene desaturation. Plant Cell 1995, 7:2139-2149. 161068, 8718624.
71. Yoshida S, Ito M, Nishida I, Watanabe A. Isolation and RNA gel blot analysis of genes that could serve as potential molecular markers for leaf senescence in Arabidopsis thaliana. Plant Cell Physiol 2001, 42:170-178. 10.1093/pcp/pce021, 11230571.
72. Sharma S, Villamor JG, Verslues PE. Essential role of tissue-specific proline synthesis and catabolism in growth and redox balance at low water potential. Plant Physiol 2011, 157:292-304. 10.1104/pp.111.183210, 3165878, 21791601.
73. Armengaud P, Breitling R, Amtmann A. The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling. Plant Physiol 2004, 136:2556-2576. 10.1104/pp.104.046482, 523322, 15347784.
74. Vijayan P, Browse J. Photoinhibition in mutants of Arabidopsis deficient in thylakoid unsaturation. Plant Physiol 2002, 129:876-885. 10.1104/pp.004341, 161708, 12068126.
75. Chandra-Shekara AC, Venugopal SC, Barman SR, Kachroo A, Kachroo P. Plastidial fatty acid levels regulate resistance gene-dependent defense signaling in Arabidopsis. Proc Natl Acad Sci USA 2007, 104:7277-7282. 10.1073/pnas.0609259104, 1855359, 17431038.
76. Doyle EA, Lane AM, Sides JM, Mudgett MB, Monroe JD. An alpha-amylase (At4g25000) in Arabidopsis leaves is secreted and induced by biotic and abiotic stress. Plant Cell Environ 2007, 30:388-398. 10.1111/j.1365-3040.2006.01624.x, 17324226.
77. Zhu AD, Li WY, Ye JL, Sun XH, Ding YD, Cheng YJ, Deng XW. Microarray expression profiling of postharvest ponkan mandarin (Citrus reticulata) fruit under cold storage reveals regulatory gene candidates and implications on soluble sugars metabolism. J Integr Plant Biol 2011, 53:358-374. 10.1111/j.1744-7909.2011.01035.x, 21348940.
78. Suzuki N, Mittler R. Reactive oxygen species and temperature stresses: A delicate balance between signaling and destruction. Physiol Plant 2006, 126:45-51.
79. Bianchi MW, Roux C, Vartanian N. Drought regulation of GST8, encoding the Arabidopsis homologue of ParC/Nt107 glutathione transferase/peroxidase. Physiol Plant 2002, 116:96-105. 10.1034/j.1399-3054.2002.1160112.x, 12207667.
80. Yun KY, Park MR, Mohanty B, Herath V, Xu FY, Mauleon R, Wijaya E, Bajic VB, Bruskiewich R, de los Reyes BG. Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress. BMC Plant Biol 2010, 10:16. 10.1186/1471-2229-10-16, 2826336, 20100339.
81. Foyer CH, Vanacker H, Gomez LD, Harbinson J. Regulation of photosynthesis and antioxidant metabolism in maize leaves at optimal and chilling temperatures: review. Plant Physiol Biochem 2002, 40:659-668.
82. Koukalova B, Kovarik A, Fajkus J, Siroky J. Chromatin fragmentation associated with apoptotic changes in tobacco cells exposed to cold stress. FEBS Lett 1997, 414:289-292. 10.1016/S0014-5793(97)01008-9, 9315704.
83. Sahi C, Singh A, Blumwald E, Grover A. Beyond osmolytes and transporters: novel plant salt-stress tolerance-related genes from transcriptional profiling data. Physiol Plant 2006, 127:1-9.
84. Dhindsa RS, Plumbdhindsa P, Thorpe TA. Leaf senescence: correlated with increased levels of membrane-permeability and lipid-peroxidation, and decreased levels of superoxide-dismutase and catalase. J Exp Bot 1981, 32:93-101.
85. Bates LS, Waldren RP, Teare ID. Rapid determination of free proline for water-stress studies. Plant Soil 1973, 39:205-207.
86. Velikova V, Yordanov I, Edreva A. Oxidative stress and some antioxidant systems in acid rain-treated bean plants: protective role of exogenous polyamines. Plant Sci 2000, 151:59-66.
87. Thordal-Christensen H, Zhang ZG, Wei YD, Collinge DB. Subcellular localization of H2O2 in plants. H2O2 accumulation in papillae and hypersensitive response during the barley-powdery mildew interaction. Plant J 1997, 11:1187-1194.
88. Cheng HY, Song SQ. Possible involvement of reactive oxygen species scavenging enzymes in desiccation sensitivity of antiaris toxicaria seeds and axes. J Integr Plant Biol 2008, 50:1549-1556. 10.1111/j.1744-7909.2008.00723.x, 19093973.
89. Beaucham C, Fridovic I. Superoxide dismutase: improved assays and an assay applicable to acrylamide gels. Anal Biochem 1971, 44:276-287. 10.1016/0003-2697(71)90370-8, 4943714.
90. Ebell LF. Variation in total soluble sugars of conifer tissues with method of analysis. Phytochemistry 1969, 8:227-233.
91. Johnson G, Johnson DK, Lambert C, Sunderwirth SG. Colorimetric determination of glucose fructose + sucrose in plant materials using combination of enzymatic + chemical methods. J Agr Food Chem 1964, 12:216-219.
92. Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19:185-193. 10.1093/bioinformatics/19.2.185, 12538238.