A multiplex RT-PCR assay for detection and differentiation of avian H3, H5, and H9 subtype influenza viruses and Newcastle disease viruses

Journal of Virological Methods

Volumn 181, Issue 2, 2012, Pages 164-169

  Tang, Qingdong ^a   Wang, Jinliang ^a   Bao, Jingnan ^a   Sun, Honglei ^a   Sun, Yipeng ^a   Liu, Jinhua ^a,b   Pu, Juan ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b Shandong Animal Disease Control Center   (China)

Author keywords

Avian influenza viruses; H3 subtype; H5 subtype; H9 subtype; Multiplex RT PCR; Newcastle disease viruses

Indexed keywords

INFLUENZA VIRUS HEMAGGLUTININ;

ANIMAL TISSUE; ARTICLE; ASSAY; AVIAN INFLUENZA; AVIAN INFLUENZA VIRUS; AVIAN INFLUENZA VIRUS SUBTYPE H3; AVIAN INFLUENZA VIRUS SUBTYPE H5; AVIAN INFLUENZA VIRUS SUBTYPE H9; CHICKEN; CHINA; CLADISTICS; CONTROLLED STUDY; DUCKS AND GEESE; ENDEMIC DISEASE; EPIDEMIC; FUSION GENE; GENOTYPE; MULTIPLEX REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; NEWCASTLE DISEASE; NEWCASTLE DISEASE PARAMYXOVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; POULTRY; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; SMEAR; SYMPTOM; VIRUS DETECTION; VIRUS GENE; VIRUS ISOLATION;

ANIMALS; CHICKENS; CHINA; DNA PRIMERS; INFLUENZA A VIRUS; INFLUENZA IN BIRDS; MULTIPLEX POLYMERASE CHAIN REACTION; NEWCASTLE DISEASE; NEWCASTLE DISEASE VIRUS; POULTRY DISEASES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; VIROLOGY;

ANATIDAE; AVES; AVIAN INFLUENZA VIRUS; GALLUS GALLUS; NEWCASTLE DISEASE VIRUS; ORTHOMYXOVIRIDAE;

EID: 84862816717     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2012.02.003     Document Type: Article

References (43)

1. Achenbach J.E., Bowen R.A. Transmission of avian influenza A viruses among species in an artificial barnyard. PLoS One 2011, 6:e17643.
2. Alexander D.J. A review of avian influenza in different bird species. Vet. Microbiol. 2000, 74:3-13.
3. Belak S., Kiss I., Viljoen G.J. New developments in the diagnosis of avian influenza. Rev. Sci. Tech. 2009, 28:233-243.
4. Campitelli L., Fabiani C., Puzelli S., Fioretti A., Foni E., De Marco A., Krauss S., Webster R.G., Donatelli I. H3N2 influenza viruses from domestic chickens in Italy: an increasing role for chickens in the ecology of influenza. J. Gen. Virol. 2002, 83:413-420.
5. Chen H.T., Zhang J., Ma L.N., Ma Y.P., Ding Y.Z., Wang M., Liu X.T., Zhang Y.G., Liu Y.S. Rapid subtyping of H9N2 influenza virus by a triple reverse transcription polymerase chain reaction. J. Virol. Methods 2009, 158:58-62.
6. Chen H.T., Zhang J., Sun D.H., Zhang J.L., Cai X.P., Liu X.T., Ding Y.Z., Ma L.N., Yang S.H., Jin L., Liu Y. Rapid discrimination of H5 and H9 subtypes of avian influenza viruses and Newcastle disease virus by multiplex RT-PCR. Vet. Res. Commun. 2008, 32:491-498.
7. Chen B.L., Zhang Z.J., Chen W.B. Isolation and preliminary serological identification of avian influenza virus-type A from chickens. China Poult. 1997, 11:4-6. (in Chinese with English abstract).
8. Cui S.J., Yu K.Z., Tang X.Y., Liu M., Tian G.B., Li J.W., Liu S.G. Biological characterization of H3N8 subtype isolated and variant avian influenza strains. Chin. J. Prev. Vet. Med. 2000, 22:85-89. (in Chinese with English abstract).
9. El Z.M., Chander Y., Redig P.T., Abd E.L.H., El S.M., Goyal S.M. Selective isolation of avian influenza virus (AIV) from cloacal samples containing AIV and Newcastle disease virus. J. Vet. Diagn. Invest. 2011, 23:330-332.
10. Fu G.H., Liu M.D., Zeng W.S., Pu J., Bi Y.H., Ma G.P., Liu J.H. Establishment of a multiplex RT-PCR assay to detect different lineages of swine H1 and H3 influenza A viruses. Virus Genes 2010, 41:236-240.
11. Guo Y., Wang M., Kawaoka Y., Gorman O., Ito T., Saito T., Webster R.G. Characterization of a new avian-like influenza A virus from horses in China. Virology 1992, 188:245-255.
12. Hoffmann E., Stech J., Guan Y., Webster R.G., Perez D.R. Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 2001, 146:2275-2289.
13. Jiang W.M., Liu S., Chen J., Hou G.Y., Li J.P., Cao Y.F., Zhuang Q.Y., Li Y., Huang B.X., Chen J.M. Molecular epidemiological surveys of H5 subtype highly pathogenic avian influenza viruses in poultry in China during 2007-2009. J. Gen. Virol. 2010, 91:2491-2496.
14. Jou W.M., Verhoeyen M., Devos R., Saman E., Fang R., Huylebroeck D., Fiers W., Threlfall G., Barber C., Carey N., Emtage S. Complete structure of the hemagglutinin gene from the human influenza A/Victoria/3/75 (H3N2) strain as determined from cloned DNA. Cell 1980, 19:683-696.
15. Kida H., Shortridge K.F., Webster R.G. Origin of the hemagglutinin gene of H3N2 influenza viruses from pigs in China. Virology 1988, 162:160-166.
16. Li Y., Shi J., Zhong G., Deng G., Tian G., Ge J., Zeng X., Song J., Zhao D., Liu L., Jiang Y., Guan Y., Bu Z., Chen H. Continued evolution of H5N1 influenza viruses in wild birds, domestic poultry, and humans in China from 2004 to 2009. J. Virol. 2010, 84:8389-8397.
17. Liu H., Zhao Y., Zheng D., Lv Y., Zhang W., Xu T., Li J., Wang Z. Multiplex RT-PCR for rapid detection and differentiation of class I and class II Newcastle disease viruses. J. Virol. Methods 2011, 171:149-155.
18. Liu Q., Ma J., Kou Z., Pu J., Lei F., Li T., Liu J. Characterization of a highly pathogenic avian influenza H5N1 clade 2.3.4 virus isolated from a tree sparrow. Virus Res. 2010, 147:25-29.
19. Liu X.L., Su J.L., Zhao J.X., Zhang G.Z. Complete genome sequence analysis of a predominant infectious bronchitis virus (IBV) strain in China. Virus Genes 2009, 38:56-65.
20. Malik Y.S., Patnayak D.P., Goyal S.M. Detection of three avian respiratory viruses by single-tube multiplex reverse transcription-polymerase chain reaction assay. J. Vet. Diagn. Invest. 2004, 16:244-248.
21. Peng Y., Zhang W., Xue F., Wang W.B., Li Y.F., Meng C.C., Zhang W.J., Liu X.F. Etiological examination on the low pathogenicity avian influenza viruses with different HA subtypes from poultry isolated in eastern China from 2006 to 2008. Chin. J. Zoonoses 2009, 25:119-121. (in Chinese with English abstract).
22. Pu J., Liu Q.F., Xia Y.J., Fan Y.L., Brown E.G., Tian F.L., Liu J.H. Genetic analysis of H3 subtype influenza viruses isolated from domestic ducks in northern China during 2004-2005. Virus Genes 2009, 38:136-142.
23. Pu J., Zhang G.Z., Ma J.H., Xia Y.J., Liu Q.F., Jiang Z.L., Wang Z., Brown E.G., Tian F.L., Liu J.H. Serologic evidence of prevalent avian H3 subtype influenza virus infection in chickens. Avian Dis. 2009, 53:198-204.
24. Qin Z.M., Tan L.T., Xu H.Y., Ma B.C., Wang Y.L., Yuan X.Y., Liu W.J. Pathotypical characterization and molecular epidemiology of Newcastle disease virus isolates from different hosts in China from 1996 to 2005. J. Clin. Microbiol. 2008, 46:601-611.
25. Qiu X., Sun Q., Wu S., Dong L., Hu S., Meng C., Wu Y., Liu X. Entire genome sequence analysis of genotype IX Newcastle disease viruses reveals their early-genotype phylogenetic position and recent-genotype genome size. Virol. J. 2011, 8:117.
26. Rashid S., Naeem K., Ahmed Z., Saddique N., Abbas M.A., Malik S.A. Multiplex polymerase chain reaction for the detection and differentiation of avian influenza viruses and other poultry respiratory pathogens. Poult. Sci. 2009, 88:2526-2531.
27. Razmyar J., Peighambari S.M. Isolation and characterization of a very virulent infectious bursal disease virus from turkey. Acta Virol. 2009, 53:271-276.
28. Reed L.J., Muench H. A simple method of estimating fifty percent endpoints. Am. J. Epidemiol. 1938, 27:493-497.
29. Rui Z., Juan P., Jingliang S., Jixun Z., Xiaoting W., Shouping Z., Xiaojiao L., Guozhong Z. Phylogenetic characterization of Newcastle disease virus isolated in the mainland of China during 2001-2009. Vet. Microbiol. 2010, 141:246-257.
30. Song M.S., Oh T.K., Moon H.J., Yoo D.W., Lee E.H., Lee J.S., Kim C.J., Yoo G.J., Kim H., Choi Y.K. Ecology of H3 avian influenza viruses in Korea and assessment of their pathogenic potentials. J. Gen. Virol. 2008, 89:949-957.
31. Stockton J., Ellis J.S., Saville M., Clewley J.P., Zambon M.C. Multiplex PCR for typing and subtyping influenza and respiratory syncytial viruses. J. Clin. Microbiol. 1998, 36:2990-2995.
32. Sun Y.P., Pu J., Jiang Z.L., Guan T., Xia Y.J., Xu Q., Liu L.Q., Ma B., Tian F.L., Brown E.G., Liu J.H. Genotypic evolution and antigenic drift of H9N2 influenza viruses in China from 1994 to 2008. Vet. Microbiol. 2010, 146:215-225.
33. Tao Q., Wang X., Bao H., Wu J., Shi L., Li Y., Qiao C., Yakovlevich S.A., Mikhaylovna P.N., Chen H. Detection and differentiation of four poultry diseases using asymmetric reverse transcription polymerase chain reaction in combination with oligonucleotide microarrays. J. Vet. Diagn. Invest. 2009, 21:623-632.
34. Wang L.C., Pan C.H., Severinghaus L.L., Liu L.Y., Chen C.T., Pu C.E., Huang D., Lir J.T., Chin S.C., Cheng M.C., Lee S.H., Wang C.H. Simultaneous detection and differentiation of Newcastle disease and avian influenza viruses using oligonucleotide microarrays. Vet. Microbiol. 2008, 127:217-226.
35. Wang R., Taubenberger J.K. Methods for molecular surveillance of influenza. Expert Rev. Anti Infect. Ther. 2010, 8:517-527.
36. Wang Z., Vreede F.T., Mitchell J.O., Viljoen G.J. Rapid detection and differentiation of Newcastle disease virus isolates by a triple one-step RT-PCR. Onderstepoort J. Vet. Res. 2001, 68:131-134.
37. Ward C.W., Dopheide T.A. Evolution of the Hong Kong influenza A sub-type. Structural relationships between the haemagglutinin from A/duck/Ukraine/1/63 (Hav 7) and the Hong Kong (H3) haemagglutinins. Biochem. J. 1981, 195:337-340.
38. Wei H.L., Bai G.R., Mweene A.S., Zhou Y.C., Cong Y.L., Pu J., Wang S., Kida H., Liu J.H. Rapid detection of avian influenza virus a and subtype H5N1 by single step multiplex reverse transcription-polymerase chain reaction. Virus Genes 2006, 32:261-267.
39. Wu S., Wang W., Yao C., Wang X., Hu S., Cao J., Wu Y., Liu W., Liu X. Genetic diversity of Newcastle disease viruses isolated from domestic poultry species in Eastern China during 2005-2008. Arch. Virol. 2010, 156:253-261.
40. Xie Z., Pang Y.S., Liu J., Deng X., Tang X., Sun J., Khan M.I. A multiplex RT-PCR for detection of type A influenza virus and differentiation of avian H5, H7, and H9 hemagglutinin subtypes. Mol. Cell. Probes 2006, 20:245-249.
41. Xu X., Subbarao Cox N.J., Guo Y. Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/96 (H5N1) virus: similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong Kong. Virology 1999, 261:15-19.
42. Zhang Y., Liu M., Shuidong O., Hu Q.L., Guo D.C., Chen H.Y., Han Z. Detection and identification of avian, duck, and goose reoviruses by RT-PCR: goose and duck reoviruses are part of the same genogroup in the genus Orthoreovirus. Arch. Virol. 2006, 151:1525-1538.
43. Zhou H., Zhang A., Chen H., Jin M. Emergence of novel reassortant H3N2 influenza viruses among ducks in China. Arch. Virol. 2011, 156:1045-1048.