Electrochemical detection of natural DNA damage induced by in situ peroxidase-generated reactive nitrogen species in DNA layer-by-layer films

Bioelectrochemistry

Volumn 86, Issue , 2012, Pages 67-71

  Zhang, Yan ^a,b   Liu, Hongyun ^a   Hu, Naifei ^a  

^a BEIJING NORMAL UNIVERSITY   (China)

^b ACADEMY OF STATE ADMINISTRATION OF GRAIN   (China)

Author keywords

Catalase; DNA damage; Electrochemical detection; Horseradish peroxidase; NO 2 radical

Indexed keywords

CATALASE; CATALYZED OXIDATION; DNA DAMAGES; DOUBLE STRANDED DNA; ELECTROACTIVE; ELECTROCHEMICAL BIOSENSOR; ELECTROCHEMICAL DETECTION; HORSE-RADISH PEROXIDASE; IN-SITU; IN-VITRO; LAYER-BY-LAYER FILMS; LIVING PROCESS; LIVING SYSTEMS; POLY(DIALLYLDIMETHYLAMMONIUM CHLORIDE); REACTIVE NITROGEN SPECIES; RU(BPY);

BIOSENSORS; CHLORINE COMPOUNDS; CYCLIC VOLTAMMETRY; DAMAGE DETECTION; HYDROGEN PEROXIDE; NITROGEN OXIDES;

DNA;

CATALASE; DOUBLE STRANDED DNA; HORSERADISH PEROXIDASE; HYDROGEN PEROXIDE; NITROGEN DIOXIDE; POLY(DIALLYLDIMETHYLAMMONIUM CHLORIDE); REACTIVE NITROGEN SPECIES;

ARTICLE; BIOSENSOR; COW; CYCLIC POTENTIOMETRY; DNA DAMAGE; DNA STRUCTURE; ELECTROCHEMISTRY; IN VITRO STUDY; INCUBATION TEMPERATURE; LAYER BY LAYER FILM; LIVER; NONHUMAN; SALMON; TESTIS;

BIOSENSING TECHNIQUES; CATALASE; DNA; DNA DAMAGE; ELECTROCHEMICAL TECHNIQUES; ELECTRODES; HORSERADISH PEROXIDASE; HYDROGEN PEROXIDE; POLYETHYLENES; QUATERNARY AMMONIUM COMPOUNDS; REACTIVE NITROGEN SPECIES;

ARMORACIA RUSTICANA;

EID: 84862789974     PISSN: 15675394     EISSN: 1878562X     Source Type: Journal    
DOI: 10.1016/j.bioelechem.2012.02.003     Document Type: Article

References (39)

1. Ohshima H., Tatemichi M., Sawa T. Chemical basis of inflammation-induced carcinogenesis. Arch. Biochem. Biophys. 2003, 417:3-11.
2. Pacher P., Beckman J.S., Liaudet L. Nitric oxide and peroxynitrite in health and disease. Physiol. Rev. 2007, 87:315-424.
3. Sawa T., Ohshima H. Nitrative DNA damage in inflammation and its possible role in carcinogenesis. Nitric Oxide 2006, 14:91-100.
4. Sakihama Y., Tamaki R., Shimoji H., Ichibc T., Fukushi Y., Tahara S., Yamasaki H. Enzymatic nitration of phytophenolics: evidence for peroxynitrite-independent nitration of plant secondary metabolites. FEBS Lett. 2003, 553:377-380.
5. Reszka K.J., McCormick M.L., Britigan B.E. Peroxidase- and nitrite-dependent metabolism of the anthracycline anticancer agents daunorubicin and doxorubicin. Biochemistry 2001, 40:15349-15361.
6. 15N Chemically induced dynamic nuclear polarization during reaction of N-acetyl-L-tyrosine with the nitrating systems nitrite/hydrogen peroxide/horseradish peroxidase and nitrite/hypochloric acid. Arch. Biochem. Biophys. 2001, 393:245-254.
7. Sampson J.B., Ye Y.Z., Rosen H., Beckman J.S. Myeloperoxidase and horseradish peroxidase catalyze tyrosine nitration in proteins from nitrite and hydrogen peroxide. Arch. Biochem. Biophys. 1998, 356:207-213.
8. Van der Vliet A., Eiserich J.P., Halliwell B., Cross C.E. Formation of reactive nitrogen species during peroxidase-catalyzed oxidation of nitrite. A potential additional mechanism of nitric oxide-dependent toxicity. J. Biol. Chem. 1997, 272:7617-7625.
9. Byun J., Henderson J.P., Mueller D.M., Heinecke J.W. 8-Nitro-2'-deoxyguanosine, a specific marker of oxidation by reactive nitrogen species, is generated by the myeloperoxidase-hydrogen peroxide-nitrite system of activated human phagocytes. Biochemistry 1999, 38:2590-2600.
10. Tuo J., Liu L., Poulsen H.E., Weimann A., Svendsen O., Loft S. Importance of guanine nitration and hydroxylation in DNA in vitro and in vivo. Free Radic. Biol. Med. 2000, 29:147-155.
11. Fojta M. Detecting DNA damage with electrodes. Electrochemistry of Nucleic Acids and Proteins. Towards Electrochemical Sensors for Genomics and Proteomics 2005, 385-431. Elsevier, Amsterdam. E. Palecek, F. Scheller, J. Wang (Eds.).
12. Palecek E. Fifty years of nucleic acid electrochemistry. Electroanalysis 2009, 21:239-251.
13. Palecek E., Fojta M. Detecting DNA hybridization and damage. Anal. Chem. 2001, 73:74A-83A.
14. Rusling J.F. Sensors for toxicity of chemicals and oxidative stress based on electrochemical catalytic DNA oxidation. Biosens. Bioelectron. 2004, 20:1022-1028.
15. Rusling J.F. Sensors for genotoxicity and oxidized DNA. Electrochemistry of Nucleic Acids and Proteins. Towards Electrochemical Sensors for Genomics and Proteomics 2005, 433-450. Elsevier, Amsterdam. E. Palecek, F. Scheller, J. Wang (Eds.).
16. Diculescu V.C., Barbosa R.M., Brett A.M.O. In situ sensing of DNA damage by a nitric oxide-releasing compound. Anal. Lett. 2005, 38:2525-2540.
17. Piedade J.A.P., Oliveira P.S.C., Lopes M.C., Brett A.M.O. Voltammetric determination of γ radiation-induced DNA damage. Anal. Biochem. 2006, 355:39-49.
18. Karadeniz H., Armagan G., Erdem A., Turunc E., Caliskan A., Kanit L., Yalcin A. The comparison of electrochemical assay and agrose gel electrophoresis for the determination of DNA damage induced by kainic acid. Electroanalysis 2009, 21:2468-2476.
19. Johnston D.H., Glasgow K.C., Thorp H.H. Electrochemical measurement of the solvent accessibility of nucleobases using electron transfer between DNA and metal complexe. J. Am. Chem. Soc. 1995, 117:8933-8938.
20. Palecek E., Jelen F. Electrochemistry of nucleic acids. Electrochemistry of Nucleic Acids and Proteins Towards Electrochemical Sensors for Genomics and Proteomics 2005, 73-173. Elsevier, Amsterdam. E. Palecek, F. Scheller, J. Wang (Eds.).
21. Thorp H.H. Cutting out the middleman: DNA biosensors based on electrochemical oxidation. Trends Biotechnol. 1998, 16:117-121.
22. Thorp H.H. Electrocatalytic DNA oxidation. Long-range charge transfer in DNA II 2004, Springer, Berlin, Heidelberg.
23. He P., Bayachou M. Layer-by-layer fabrication and characterization of DNA-wrapped single-walled carbon nanotube particles. Langmuir 2005, 21:6086-6092.
24. Zhou L.P., Yang J., Estavillo C., Stuart J.D., Schenkman J.B., Rusling J.F. Toxicity screening by electrochemical detection of DNA damage by metabolites generated in situ in ultrathin DNA-enzyme films. J. Am. Chem. Soc. 2003, 125:1431-1436.
25. Decher G. Fuzzy nanoassemblies: toward layered polymeric multicomposites. Science 1997, 277:1232-1237.
26. Decher G., Schneloff J.B. Multilayer Thin Films: Sequential Assembly of Nanocomposite Materials 2003, Wiley-VCH, Weinheim.
27. Bouyahia N., Hamlaoui M.L., Hnaien M., Lagarde F., Jaffrezic-Renault N. Impedance spectroscopy and conductometric biosensing for probing catalase reaction with cyanide as ligand and inhibitor. Bioelectrochemistry 2011, 80:155-161.
28. Voet D., Voet J.G. Biochemistry 1995, Wiley, New York. 2nd ed.
29. Hill H.A.O. Bio-electrochemistry. Pure Appl. Chem. 1987, 59:743-758.
30. Shibata H., Kono Y., Yamashita S., Sawa Y., Ochiai H., Tanaka K. Degradation of chlorophyl by nitrogen dioxide generated from nitrite by the peroxidase reaction. Biochim. Biophys. Acta (BBA) Bioenerg. 1995, 1230:45-50.
31. Welinder K.G. Amino acid sequence studies of horseradish peroxidase. Eur. J. Biochem. 1979, 96:483-502.
32. Zu Y., Hu N. Electrochemical detection of DNA damage induced by in situ generated styrene oxide through enzyme reactions. Electrochem. Commun. 2009, 11:2068-2070.
33. Florence T.M. The degradation of cytochrome c by hydrogen peroxide. J. Inorg. Biochem. 1985, 23:131-141.
34. Gutteridge J.M.C. Iron promoters of the fenton reaction and lipid peroxidation can be released from haemoglobin by peroxides. FEBS Lett. 1986, 201:291-295.
35. Ferri T., Poscia A., Santucci R. Direct electrochemistry of membrane entrapped horseradish peroxidase. Part I. A voltammetric and spectroscopic study. Bioelectrochem. Bioenerg. 1998, 44:177-181.
36. Chen X., Ruan C., Kong J., Deng J. Characterization of the direct electron transfer and bioelectrocatalysis of horseradish peroxidase in DNA film at pyrolytic graphite electrode. Anal. Chim. Acta 2000, 412:89-98.
37. Lu H., Li Z., Hu N. Direct voltammetry and electrocatalytic properties of catalase incorporated in polyacrylamide hydrogel films. Biophys. Chem. 2003, 104:623-632.
38. Hecht H.J., Kalisz H.M., Hendle J., Schmid R.D., Schomburg D. Crystal structure of glucose oxidase from Aspergillus niger refined at 2·3Å resolution. J. Mol. Biol. 1993, 229:153-172.
39. Murshudov G.N., Melik-Adamyan W.R., Grebenko A.I., Barynin V.V., Vagin A.A., Vainshtein B.K., Daute P.Z., Wilson K.S. Three-dimensional structure of catalase from Micrococcus lysodeikticus at 1.5 Å resolution. FEBS Lett. 1992, (312):127-131.